LOCUS       NM_030131               3283 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus cornichon family AMPA receptor auxiliary protein 4
            (Cnih4), mRNA.
ACCESSION   NM_030131 XM_484947
VERSION     NM_030131.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3283)
  AUTHORS   Dil,S., Ye,J., Ma,H., Unar,A., Khan,I., Ali,A., Khan,K.,
            Menglei,Y., Ma,A., Shah,B., Khan,R., Liu,Z. and Shi,Q.
  TITLE     Cornichon protein CNIH4 is not essential for mice gametogenesis and
            fertility
  JOURNAL   Dev Biol 496, 15-23 (2023)
   PUBMED   36657507
  REMARK    GeneRIF: Cornichon protein CNIH4 is not essential for mice
            gametogenesis and fertility.
REFERENCE   2  (bases 1 to 3283)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC113084.12, AK021301.1 and AW050376.1.
            
            On Dec 14, 2007 this sequence version replaced NM_030131.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            transcript and genomic sequence to make the sequence consistent
            with the reference genome assembly. The genomic coordinates used
            for the transcript record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660817.117098.1,
                                           SRR1660813.157879.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                AC113084.12        21758-21803
            47-597              AK021301.1         1-551
            598-2974            AC113084.12        37151-39527
            2975-3283           AW050376.1         1-309               c
FEATURES             Location/Qualifiers
     source          1..3283
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 84.53 cM"
     gene            1..3283
                     /gene="Cnih4"
                     /gene_synonym="CNIH-4; D530030D03Rik; E430023H19Rik;
                     HSPC163"
                     /note="cornichon family AMPA receptor auxiliary protein 4"
                     /db_xref="GeneID:98417"
                     /db_xref="MGI:MGI:1925828"
     exon            1..131
                     /gene="Cnih4"
                     /gene_synonym="CNIH-4; D530030D03Rik; E430023H19Rik;
                     HSPC163"
                     /inference="alignment:Splign:2.1.0"
     CDS             63..482
                     /gene="Cnih4"
                     /gene_synonym="CNIH-4; D530030D03Rik; E430023H19Rik;
                     HSPC163"
                     /note="cornichon homolog 4"
                     /codon_start=1
                     /product="protein cornichon homolog 4"
                     /protein_id="NP_084407.1"
                     /db_xref="CCDS:CCDS15582.1"
                     /db_xref="GeneID:98417"
                     /db_xref="MGI:MGI:1925828"
                     /translation="MEAVVFLFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKL
                     NKWVIPELVGHTIVTVLMLVSLHWFIFLLNLPVATWNIYRFIMVPSGNMGVFDPTEIH
                     NRGQLKSHMKEAMIKLGFYLLCFFMYLYSMILALIND"
     exon            132..200
                     /gene="Cnih4"
                     /gene_synonym="CNIH-4; D530030D03Rik; E430023H19Rik;
                     HSPC163"
                     /inference="alignment:Splign:2.1.0"
     exon            201..313
                     /gene="Cnih4"
                     /gene_synonym="CNIH-4; D530030D03Rik; E430023H19Rik;
                     HSPC163"
                     /inference="alignment:Splign:2.1.0"
     exon            314..454
                     /gene="Cnih4"
                     /gene_synonym="CNIH-4; D530030D03Rik; E430023H19Rik;
                     HSPC163"
                     /inference="alignment:Splign:2.1.0"
     exon            455..3268
                     /gene="Cnih4"
                     /gene_synonym="CNIH-4; D530030D03Rik; E430023H19Rik;
                     HSPC163"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3241..3246
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cnih4"
                     /gene_synonym="CNIH-4; D530030D03Rik; E430023H19Rik;
                     HSPC163"
                     /note="hexamer: AATAAA"
     polyA_site      3268
                     /gene="Cnih4"
                     /gene_synonym="CNIH-4; D530030D03Rik; E430023H19Rik;
                     HSPC163"
                     /note="major polyA site"
ORIGIN      
        1 catgccgcct atcccagcgg cgcggcccga agctggtttg acgggcggag cggcggcgga
       61 ggatggaggc ggtggtgttc ctcttctcgc tcctcgactg ttgcgcgctc atcttcctct
      121 ccgtctactt catcattaca ttgtctgatt tagaatgtga ttacattaac gccagatcat
      181 gttgctcaaa attaaacaag tgggtgatcc cggagttggt cggccacacc attgtcactg
      241 tgctgatgct tgtctccctg cactggttca tcttccttct caacttacct gtcgccacgt
      301 ggaatatata taggttcatt atggtgccaa gtggcaacat gggagtattt gatccaacag
      361 aaatacacaa ccggggacag ttaaagtcac acatgaaaga agccatgatc aagcttggtt
      421 tctacctgct ctgtttcttc atgtatctct atagtatgat tctagctttg ataaatgact
      481 gaagctggag aagccgggtt gaagccaagc tatactacac actgcacaat tgaggagcca
      541 gagactacta aaccaccctt agaaccatga ccagagcagt atatattttg gtctttgaac
      601 aaaaaaaaaa aacctatttt tgctgtattt ttaccacata aagtatttaa aaaaaataaa
      661 ttgagttttt gtagatttct gatttctgaa ctccagcaaa tgaaggtgtt ttgtctcctc
      721 tgtggctgtt tggtagaagt aggaatgtgt gccagctttg catgccaaag agagaaggga
      781 cagacctaaa agagccatta atacagtggt tcccagcctg tgggtcacca ccttttagga
      841 gtcaaatgac tctttcacag gggtcaccta agaccattga aaacatagat atttacattg
      901 tgattcataa ctgtagcaaa attacaatta cgaagtaaca gcgaaaatgg ttttatggtt
      961 gggggggttc acaacatgag gaactgtatt aaagtgtcac agcattagga aagttgagaa
     1021 ccaccacctt agtagatgag ctgcactgtc tgaaaagcca gagccgaaag caacacagcg
     1081 aatctggata tatgaagaaa gtcatgttaa tgtggcttaa ggattggggg cttttcagct
     1141 atgactttca gtagtaatga cattttaaaa tatatttatt tgcagtattt gaaaccttat
     1201 gagccatgtg cccaaataca atgtaattcc tgcttccaga aaggaaaaat acattttaaa
     1261 atcaagattt tattaagagc tttcatttta aagcttgtac ctctgtaatg atcctcccca
     1321 cctccctcta atcacctcag ctcttgccag accttatttt tgcatcataa ctgttccatt
     1381 tgtatttgat ttctttaata atatatttta atggatttgg agaggtgact aggtagaagt
     1441 cactgagaat caggaaacca gtcagtcact gttagaaaaa caacgcaaga gcagcccgcg
     1501 agtgctcact tggtgcagaa ttcgctgcag cactgaccac tctggacggg gagggagccc
     1561 agcacaagcc gttgcatgca gtacccagcg actctggaag ctcctgctct gtatgagagg
     1621 gcgccattaa cctagtctgt gctcatcata tcttgcaggg tggtgtgaat ctggcaatcc
     1681 aacctctttc ctagttacac tttagggttg gtatcctaag cactgacaca taaggaaaca
     1741 ggactgtaca ctgtggcata atggaccttg gcagcaaaac aaagtgtgtg cttccccaga
     1801 agattaaatt tttaaatgtt gcatgtctct gtttttttaa ttttttttca tttgtttatt
     1861 ttatgtatat gagtacactg tccttgtctt cagacgcacc agaagagggc atcagatccc
     1921 tcttttgagc caccatgtgg ttgctgggaa ttgaactcag gatctccgga agagcagtcg
     1981 gtgctcttaa ccactgagcc atctctccag ccatctaaat gtcgcctgtc tgattgagtg
     2041 aggagttggt agcagtaagt gccaggacac tgagtcccct gttagagtgg gagctgtgct
     2101 ctgaccaaac aggaaaagag ggttgggagg gcatgcaaag gaaacctggt tccctgggcc
     2161 tctgtaaaag ccgggaaatg ctacctataa taatcttatg tttctgccta gaaaagggct
     2221 aagcagctgc accatgggag ttactttata cttcctccta ctgtttccct gtagggcacc
     2281 ttctgcttca ctctaccttc cagtgccctc accgttattc aagcttttca aacagacctg
     2341 ctgttggctt catagaactg ggagacacaa tggagggctt ttgtctagaa tgtttgagct
     2401 taaactgaaa gccatggaac taagcacctt tgggctgtct tgttgggcct aagctgcaga
     2461 ggaggactga ctgagaaagc tgccttgtct ataaagaccc agcttaactc tgaaacacta
     2521 gttatgaatg gacacctatt cctcatactg cttgtgtgta tcaaagccag gaaaggagag
     2581 agtcattttt ctggggtttt tggaggtagg agggatgctt ttataaatgc tgaagaagag
     2641 gatgtgtggc ctaagtggct acggctctga agcttgaggt gctgctgtat ggtgatgagg
     2701 gtgtttgcag aggagctgtg agatctgaga ggggggggga ggggggaatg actagaggtt
     2761 gtcagagttc tcaaagatct gaacattggg agctcagctc ggtgtcctct tgtgctctct
     2821 tcctgcctgc cctctgtaaa ggctctaagg ttgaaggcct ggccagtgca gcctgctgtg
     2881 gaatgcagcc acattgtgtc atgtttcctt aggcttttaa ctgtagcaga tgccttgtgt
     2941 ctagagctga ggaagcaaag cccaagatgc ggcacccccc cacccccacc cccacacaca
     3001 catctaacat gtctcttcac aagaagacaa tgtagcaaga gcccagaggc ttccttctga
     3061 cctgctctga ctttaaacct ctgtactgtt tcctgtggga agtactcgcc actttccatg
     3121 tggcatctct tgtatgcaaa ctagattgtg cgctcctaga gggcagagtc cactctgatc
     3181 acgtttgtgt tgtcttcctt acccttctgg cgcctaatac agtgccttgc acacagacac
     3241 aataaatggc agttgaataa caaattaaaa aaaaaaaaaa aaa
//
