LOCUS       NM_009919               1484 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus cornichon family AMPA receptor auxiliary protein 1
            (Cnih1), transcript variant 1, mRNA.
ACCESSION   NM_009919
VERSION     NM_009919.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1484)
  AUTHORS   Tan,L., Yu,M., Li,Y., Xue,S., Chen,J., Zhai,Y., Fang,X., Liu,J.,
            Liu,J., Wu,X., Xu,H. and Shen,Q.
  TITLE     Overexpression of Long Non-coding RNA 4933425B07Rik Causes Urinary
            Malformations in Mice
  JOURNAL   Front Cell Dev Biol 9, 594640 (2021)
   PUBMED   33681192
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1484)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
REFERENCE   3  (bases 1 to 1484)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
REFERENCE   4  (bases 1 to 1484)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   5  (bases 1 to 1484)
  AUTHORS   Davidson,B. and Swalla,B.J.
  TITLE     Isolation of genes involved in ascidian metamorphosis: epidermal
            growth factor signaling and metamorphic competence
  JOURNAL   Dev Genes Evol 211 (4), 190-194 (2001)
   PUBMED   11455434
REFERENCE   6  (bases 1 to 1484)
  AUTHORS   Hwang,S.Y., Oh,B., Zhang,Z., Miller,W., Solter,D. and Knowles,B.B.
  TITLE     The mouse cornichon gene family
  JOURNAL   Dev Genes Evol 209 (2), 120-125 (1999)
   PUBMED   10022955
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DV653213.1, AK152432.1, AK011200.1 and BY507194.1.
            
            On Dec 11, 2007 this sequence version replaced NM_009919.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK011200.1, AK154479.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-601               DV653213.1         55-655
            602-1374            AK152432.1         553-1325
            1375-1469           AK011200.1         1328-1422
            1470-1484           BY507194.1         335-349
FEATURES             Location/Qualifiers
     source          1..1484
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 24.29 cM"
     gene            1..1484
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
                     /note="cornichon family AMPA receptor auxiliary protein 1"
                     /db_xref="GeneID:12793"
                     /db_xref="MGI:MGI:1277202"
     exon            1..175
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..529
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein cornichon homolog 1"
                     /codon_start=1
                     /product="protein cornichon homolog 1 isoform 1"
                     /protein_id="NP_034049.2"
                     /db_xref="CCDS:CCDS26980.1"
                     /db_xref="GeneID:12793"
                     /db_xref="MGI:MGI:1277202"
                     /translation="MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQ
                     CNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYD
                     PTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYVLVSS"
     exon            176..244
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
                     /inference="alignment:Splign:2.1.0"
     exon            245..357
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
                     /inference="alignment:Splign:2.1.0"
     exon            358..501
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
                     /inference="alignment:Splign:2.1.0"
     exon            502..1484
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1363..1368
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
                     /note="hexamer: AATAAA"
     polyA_site      1381
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
                     /note="major polyA site"
     regulatory      1449..1454
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
                     /note="hexamer: AATAAA"
     regulatory      1454..1459
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
                     /note="hexamer: AATACA"
     polyA_site      1476
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
     polyA_site      1484
                     /gene="Cnih1"
                     /gene_synonym="0610007J15; Cnih; CNIH-1"
ORIGIN      
        1 ggctgaggcc gggggaagtg aatggtttta cccagagggc cgtgcgccgc ctttctccgc
       61 tggccccggc gcgcccggca gctcctcccc ggccatggcg ttcactttcg cggccttctg
      121 ctatatgctg gcgctgctgc tcaccgccgc gctcatcttc ttcgccatct ggcacatcat
      181 agcatttgat gagctgaaga ccgactacaa gaaccctata gaccagtgca ataccctgaa
      241 ccctcttgtc cttccagagt acctcatcca cgcgttcttc tgtgtcatgt ttctctgtgc
      301 ggcagagtgg ctgaccctgg gcctcaatat gccccttttg gcataccata tttggaggta
      361 tatgagtaga ccagtgatga gcggccctgg cctctatgac ccgacgacca tcatgaatgc
      421 agacattcta gcctactgtc agaaggaagg atggtgcaaa ctcgcttttt accttctagc
      481 gtttttttac tacctatacg gcatgatcta tgttctggtg agctcttaga acaacacaga
      541 agaatcggtc cagttaagtg catgcaaaac gccaccaatg aagggattct atccagcaag
      601 gtcctgtttc caagagtagc ctatggaatc tgatcagtta ctttaaaaaa tgacttctta
      661 ttttttaaat gtttccacat tttttgcttg tggaaagact gttttcatat gttctacttg
      721 gataaagaat ttaaatggaa ttacgtataa attaatataa aatgattacc tctggtgttg
      781 acaggttgaa cttgcactct taaggaacag ccataaccct ccgaatgatt gcattaattt
      841 ctgaccgccc tcagcccgtt ggaagcttgg tttagaggac ttgttgggct cattttggtt
      901 ttattgaaat gccatctaaa tatgttagct gtagatagga ggtgcttctg gtgaactgaa
      961 agtgtctgac tcgtgaggaa catggtaggt tcctcactta tcactgtaga tgattctata
     1021 tggacacaac agtaagaaga atggggcctc gtccctgtcg acttgaatat tatccctatg
     1081 tattgcatga gaggggtctc cctcattcca tcagagtaat acacttgctt taattcttaa
     1141 gcctaagtga tacaaacatg ccgaattacc tgtaaagaat gcatttaaag ctattctaaa
     1201 tgggttttta tttgtaagac attatttact aggaagctgg tgatattaat gcttactgtt
     1261 ctaatccagt ggccaaggta ttaagaattt gcaagtattt tagattttcg aaaatgaatg
     1321 agagaactgt gtaaacaccc cgctgttcct tcagtgcaac acaataaaac tctgaaatga
     1381 agatgctttg ctgtgcattg tttgaaagat tacaaacagc tgtttctcaa accctctcaa
     1441 tccatcataa taaaatacat aatattgtca tctttagaag taaa
//
