LOCUS       XM_006503709            2567 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus cyclic nucleotide gated channel alpha 1
            (Cnga1), transcript variant X1, mRNA.
ACCESSION   XM_006503709
VERSION     XM_006503709.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..2567
                     /gene="Cnga1"
                     /gene_synonym="Cncg"
                     /note="cyclic nucleotide gated channel alpha 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 6 ESTs, 2 long SRA reads, 19 Proteins, and
                     93% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:12788"
                     /db_xref="MGI:MGI:88436"
     CDS             49..2148
                     /gene="Cnga1"
                     /gene_synonym="Cncg"
                     /codon_start=1
                     /product="cGMP-gated cation channel alpha-1 isoform X1"
                     /protein_id="XP_006503772.1"
                     /db_xref="GeneID:12788"
                     /db_xref="MGI:MGI:88436"
                     /translation="MEARSGVWDEDIKLTMKTNIINTWHSFVNIPNVIVPAIEKEIRR
                     MENGACSSFSDDDNGSLSEESENEDSFFRSNSYKRRGPSQREQHLPGTMALFNVNNSS
                     NKDQEPKEKKKKKKEKKSKADDKNENKKDPEKKKKKEKEKEKKKKEEKTKEKKEEEKK
                     EVVVIDPSGNTYYNWLFCITLPVMYNWTMIIARACFDELQSDYLEYWLIFDYVSDVVY
                     LADMFVRTRTGYLEQGLLVKDRMKLIEKYKANLQFKLDVLSVIPTDLLYIKFGWNYPE
                     IRLNRLLRISRMFEFFQRTETRTNYPNIFRISNLVMYIVIIIHWNACVYYSISKAIGF
                     GNDTWVYPDVNDPEFGRLARKYVYSLYWSTLTLTTIGETPPPVLDSEYIFVVVDFLIG
                     VLIFATIVGNIGSMISNMNAARAEFQSRVDAIKQYMNFRNVSKDMEKRVIKWFDYLWT
                     NKKTVDEREVLRYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYS
                     PGDYICKKGDIGREMYIIKEGKLAVVADDGITQFVVLSDGSYFGEISILNIKGSKAGN
                     RRTANIKSIGYSDLFCLSKDDLMEALTEYPDAKTMLEEKGRQILMKDGLLDINIANMG
                     SDPKDLEEKVTRMEGSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIETEFS
                     ALEEPGGESELTESLQD"
ORIGIN      
        1 tcatcggtga aggaaccagt gtggctcaag ttgaatgatc tcttgggaat ggaagctaga
       61 agtggagtct gggatgaaga tattaaacta accatgaaga caaatattat caatacgtgg
      121 cattccttcg taaatattcc caatgtgatc gtaccagcca ttgaaaagga aatccggcgg
      181 atggaaaatg gagcgtgcag ctccttttct gacgatgaca atggctctct gtctgaagaa
      241 tcagagaatg aggactcttt ctttagaagc aactcgtaca aaaggcgagg accatcacag
      301 agggagcagc acttgccagg tactatggct cttttcaatg tcaacaacag cagcaacaaa
      361 gaccaagagc caaaggagaa aaagaaaaaa aagaaggaaa agaagagcaa ggccgatgat
      421 aaaaatgaaa ataaaaagga cccagagaag aaaaagaaga aggaaaagga aaaagagaag
      481 aaaaagaagg aggagaaaac caaagagaag aaagaagagg agaagaaaga agtcgtggtt
      541 attgatcctt caggaaacac atactacaac tggctgtttt gtatcacttt gcctgtgatg
      601 tacaactgga cgatgattat tgcaagagca tgttttgatg aactccagtc tgattaccta
      661 gaatactggc tcatttttga ttacgtatca gatgtagtct atcttgccga tatgtttgta
      721 cgaacaagga caggttacct ggaacaaggg ctgctagtga aagacagaat gaaactcata
      781 gagaaataca aagcaaacct gcagtttaaa cttgatgttc tgtcagtgat accgaccgat
      841 ctgctgtaca tcaagtttgg gtggaactat ccagaaatca ggttaaaccg gctgttaagg
      901 atctctcgaa tgtttgagtt cttccagagg acggaaacaa ggaccaacta cccaaacatc
      961 tttaggattt cgaaccttgt gatgtacatc gtcatcatca tccactggaa cgcttgtgtg
     1021 tattattcca tctcaaaagc tattggattt gggaatgaca catgggtcta ccctgatgtt
     1081 aatgatcctg aattcggccg tttagctaga aaatatgtct acagccttta ttggtctact
     1141 ttgactttga caaccattgg tgaaactcca cctcccgtgc tggattctga gtacatcttt
     1201 gtggtggtag acttcttaat tggagtttta attttcgcca ccattgtcgg taacataggt
     1261 tccatgattt ccaatatgaa tgcagcccgg gcagaatttc aatcaagagt tgatgctatc
     1321 aaacagtaca tgaattttcg aaatgtaagc aaagatatgg aaaagagggt tattaaatgg
     1381 tttgactacc tgtggaccaa caaaaaaaca gtggatgaga gagaagtcct gagatacctc
     1441 cctgacaaac taagggcaga aattgccatc aacgttcatc tagacacgtt aaaaaaggtt
     1501 cgcatctttg ctgactgtga agctggtctg ttggtggagt tggtgttgaa actacaaccc
     1561 caggtgtata gtcccggaga ttacatatgc aagaaagggg acatcgggcg ggagatgtac
     1621 atcatcaagg aaggcaaact tgctgtggtg gcagatgacg gaattacaca gtttgtggtg
     1681 ttgagtgacg gcagttactt tggtgagatc agcattctta atatcaaagg cagcaaggct
     1741 ggcaaccgaa gaacagccaa cattaagagc atcggctact cggacctgtt ctgcctctcc
     1801 aaagatgacc tcatggaagc tcttacagag tacccagatg ccaaaactat gctggaagag
     1861 aaagggaggc agatcttaat gaaagatggt ctgctggata taaacattgc aaatatgggc
     1921 agtgacccta aagacctgga agagaaggtc actcgaatgg aggggtcagt ggacctcctg
     1981 caaacgcgat ttgcccgtat cttggctgaa tatgagtcga tgcagcagaa actcaagcaa
     2041 agattaacca aggtcgagaa atttctgaaa ccgcttattg aaacagaatt ttcagctctg
     2101 gaggaacccg gaggggaaag tgagctcacg gagtctctac aggactgaaa agctggtcaa
     2161 cagccaaacc catgcacggt gtgtgatcct tttgagtgtt tgaccagaga cagctgagaa
     2221 ttgggagaaa gagtcgtctg ggaaatttct ctacagtgaa aatgtgtgtg ggtagatgac
     2281 acaaatcgtt tgtgtaatac tgcaacaaaa gtatcatctt ctcctgggat ttttcacaat
     2341 ggacaccgtg cgaggacctg aactgattaa cgtgtctgtg tcaggatctg tttttcttcc
     2401 ccaccgatgt tcctttgatg taatatcctg taaaagtgag caagtacttc tccttttcag
     2461 gccacttgct ctgttgagga atcaaatgta cccagggtca ctgtgtacct tgtctttgag
     2521 atacagttat cagaagtaga atgcaataaa gtgaaattga ttacaaa
//
