LOCUS       NM_025599               1171 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus cms small ribosomal subunit 1 (Cmss1), mRNA.
ACCESSION   NM_025599
VERSION     NM_025599.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1171)
  AUTHORS   Thuret,S., Bhatt,L., O'Leary,D.D. and Simon,H.H.
  TITLE     Identification and developmental analysis of genes expressed by
            dopaminergic neurons of the substantia nigra pars compacta
  JOURNAL   Mol Cell Neurosci 25 (3), 394-405 (2004)
   PUBMED   15033168
REFERENCE   4  (bases 1 to 1171)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 1171)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK136657.1, AK012168.1 and AK019979.1.
            
            On Jan 18, 2008 this sequence version replaced NM_025599.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK019979.1, AK012168.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-93                AK136657.1         2-94
            94-1152             AK012168.1         75-1133
            1153-1171           AK019979.1         1129-1147
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 34.22 cM"
     gene            1..1171
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /note="cms small ribosomal subunit 1"
                     /db_xref="GeneID:66497"
                     /db_xref="MGI:MGI:1913747"
     exon            1..202
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             142..972
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /note="cms1 ribosomal small subunit homolog"
                     /codon_start=1
                     /product="protein CMSS1"
                     /protein_id="NP_079875.2"
                     /db_xref="CCDS:CCDS37365.1"
                     /db_xref="GeneID:66497"
                     /db_xref="MGI:MGI:1913747"
                     /translation="MADDLGDEWWENQPAAASSPEQSGGEEGGDTEMTQQDTAPVPEK
                     TQQPTECFLTQTKEPKAEDSRKTRKWKKKKISDILAKSEPKPGTPEDLQKLIRDHYSS
                     SRSVIELEELHLPDSCFLKANDLTHSLSSYLKEICPKWVKLRKTHNEKKSVLMLILCS
                     SAVRALELIRSLTAFKGDAKVMKLFAKHIKVQEQVKLLEKRVIHLGVGTPGRIKELVK
                     QDGLHLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLDMGVFSLCKSDSLKLGLF
                     "
     exon            203..282
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            283..357
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            358..487
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            488..547
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            548..650
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            651..711
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            712..799
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            800..888
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            889..1171
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1135..1140
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1155
                     /gene="Cmss1"
                     /gene_synonym="1110001A06Rik; 2610528E23Rik;
                     4930572F24Rik"
                     /note="major polyA site"
ORIGIN      
        1 atctccagtg gcgcgggcga cggagttcct tggtttttcc gcgtgtagcg ttgctaacgc
       61 cgccagtgaa gctgagccca ggagcgcgag cggccgcctt gctttcatct ggttgtcagt
      121 tcgcgtccgg gtctcacggg gatggcagac gatctgggag acgagtggtg ggagaaccag
      181 ccggcagccg ccagcagccc agagcaatca ggtggtgagg aaggagggga cacggaaatg
      241 acacagcagg acacagctcc ggttcctgag aaaacccaac agcccactga gtgtttcctg
      301 acacaaacaa aggaacccaa agcagaggac tctcggaaga ccaggaagtg gaagaagaag
      361 aaaatttctg atattcttgc aaaatcagag cccaaaccag ggacccctga ggaccttcag
      421 aagctgatca gagaccatta cagcagcagc cgttccgtga tagaattaga agaactgcac
      481 ctaccagact cctgcttcct caaggccaat gatttgactc acagtctctc ttcataccta
      541 aaagaaatct gtcctaagtg ggtaaaactt cggaaaaccc acaacgagaa gaagtcggtc
      601 ctgatgctga tcctctgcag ctccgctgtg cgagccctgg agctcatcag gtctctgaca
      661 gcattcaaag gagatgccaa agttatgaaa ttatttgcaa aacatataaa ggtccaggaa
      721 caggtaaagt tgctggagaa gcgtgtgata cacctgggtg tggggactcc ggggagaatc
      781 aaagaacttg tcaaacaaga tggcctccat ttgaacccct taaagtttct ggtgttcgac
      841 tggaactgga gagatcagaa gctgaggaga atgatggaca ttcccgagat aagaaaggag
      901 gttttcgagc ttctagatat gggagtgttc agcctgtgca agtcggactc cttgaagctg
      961 ggtcttttct aagcctgggt cctgatgaag agtccagttg ccaacatatt gcaagcactc
     1021 agtaacttac tccaccgtaa tcatgttaag tccatcaccc agtggatccc tgaggctgcc
     1081 tcgaggggat tctttgacaa ctgtgaccct gtctttgggc tcataccctc agataataaa
     1141 agctctgcct gcgtgtgttg tcttgttgag c
//
