LOCUS       NM_001294277             687 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus C-X9-C motif containing 4 (Cmc4), transcript variant
            2, mRNA.
ACCESSION   NM_001294277
VERSION     NM_001294277.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Narducci,M.G., Virgilio,L., Engiles,J.B., Buchberg,A.M.,
            Billips,L., Facchiano,A., Croce,C.M., Russo,G. and Rothstein,J.L.
  TITLE     The murine Tcl1 oncogene: embryonic and lymphoid cell expression
  JOURNAL   Oncogene 15 (8), 919-926 (1997)
   PUBMED   9285687
REFERENCE   3  (bases 1 to 687)
  AUTHORS   Madani,A., Choukroun,V., Soulier,J., Cacheux,V., Claisse,J.F.,
            Valensi,F., Daliphard,S., Cazin,B., Levy,V., Leblond,V.,
            Daniel,M.T., Sigaux,F. and Stern,M.H.
  TITLE     Expression of p13MTCP1 is restricted to mature T-cell
            proliferations with t(X;14) translocations
  JOURNAL   Blood 87 (5), 1923-1927 (1996)
   PUBMED   8634440
REFERENCE   4  (bases 1 to 687)
  AUTHORS   Madani,A., Soulier,J., Schmid,M., Plichtova,R., Lerme,F.,
            Gateau-Roesch,O., Garnier,J.P., Pla,M., Sigaux,F. and Stern,M.H.
  TITLE     The 8 kD product of the putative oncogene MTCP-1 is a mitochondrial
            protein
  JOURNAL   Oncogene 10 (11), 2259-2262 (1995)
   PUBMED   7784073
REFERENCE   5  (bases 1 to 687)
  AUTHORS   Soulier,J., Madani,A., Cacheux,V., Rosenzwajg,M., Sigaux,F. and
            Stern,M.H.
  TITLE     The MTCP-1/c6.1B gene encodes for a cytoplasmic 8 kD protein
            overexpressed in T cell leukemia bearing a t(X;14) translocation
  JOURNAL   Oncogene 9 (12), 3565-3570 (1994)
   PUBMED   7970717
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL671860.6 and AL731844.18.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.3929983.1, CJ080887.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: PMID: 7784073
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-47                AL671860.6         11134-11180         c
            48-246              AL671860.6         10611-10809         c
            247-314             AL671860.6         4142-4209           c
            315-687             AL731844.18        181085-181457       c
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X"
     gene            1..687
                     /gene="Cmc4"
                     /gene_synonym="Mtcp1nb; p8MTCP1"
                     /note="C-X9-C motif containing 4"
                     /db_xref="GeneID:105886298"
                     /db_xref="MGI:MGI:5637812"
     exon            1..47
                     /gene="Cmc4"
                     /gene_synonym="Mtcp1nb; p8MTCP1"
                     /inference="alignment:Splign:2.1.0"
     exon            48..246
                     /gene="Cmc4"
                     /gene_synonym="Mtcp1nb; p8MTCP1"
                     /inference="alignment:Splign:2.1.0"
     exon            247..314
                     /gene="Cmc4"
                     /gene_synonym="Mtcp1nb; p8MTCP1"
                     /inference="alignment:Splign:2.1.0"
     CDS             257..463
                     /gene="Cmc4"
                     /gene_synonym="Mtcp1nb; p8MTCP1"
                     /note="protein p8 MTCP-1; MTCP-1 type A; mature T-cell
                     proliferation-1 type A; mature T-cell proliferation 1
                     neighbor protein; C-x(9)-C motif containing 4"
                     /codon_start=1
                     /product="cx9C motif-containing protein 4"
                     /protein_id="NP_001281206.1"
                     /db_xref="CCDS:CCDS41030.1"
                     /db_xref="GeneID:105886298"
                     /db_xref="MGI:MGI:5637812"
                     /translation="MPQKDPCQKQACEIQKCLQANNYLESKCQAVIQELRKCCARYPK
                     GRSLVCSGFEKEEEEKLAMKSGSK"
     exon            315..687
                     /gene="Cmc4"
                     /gene_synonym="Mtcp1nb; p8MTCP1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      666..671
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cmc4"
                     /gene_synonym="Mtcp1nb; p8MTCP1"
                     /note="hexamer: AATAAA"
     polyA_site      687
                     /gene="Cmc4"
                     /gene_synonym="Mtcp1nb; p8MTCP1"
                     /note="major polyA site"
ORIGIN      
        1 ggggctcaga ggcggtgccc gcctagcagc acctgggaga agagcggtca cagcccttgg
       61 accacttccg gctgctggcc tgcacctcct accttcagtt ctagtgacct cggctcggga
      121 tgccccttgg ttcgtcctag gctcacaacg cgaaccctgc ttgagtgtcc cggggtgggg
      181 gacctggaag ttttagccta gctgtgctgg aggcggaata attagtccaa gaaacatttt
      241 attcattttt ctggatatgc cacaaaagga tccatgccag aaacaagcct gtgaaataca
      301 aaaatgttta caagccaaca actatttgga atcgaagtgt caggctgtca tccaagaact
      361 tcgtaagtgt tgtgctcgat atcccaaagg aagatctctt gtctgctcag gatttgagaa
      421 agaagaggaa gagaagttgg caatgaagtc tggatccaag taaagttgta ctgagatgtt
      481 aaattctgct tcatgtttcc ctcaagcatg ttttatttac tgtccctcct tcaatctagg
      541 tagcagcaaa cagcaaatta aaaagtcaat tgtaagagtt agcaaatata ttatctatgc
      601 aaaataaacc aaaatatcac cctatataga gaataaatat gtctaatgta aaagggagct
      661 gctaaaataa acatgtatta cattaaa
//
