LOCUS       NM_026844               1440 bp    mRNA    linear   ROD 23-APR-2024
DEFINITION  Mus musculus C-X9-C motif containing 2 (Cmc2), mRNA; nuclear gene
            for mitochondrial product.
ACCESSION   NM_026844
VERSION     NM_026844.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1440)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1440)
  AUTHORS   Orozco,L.D., Bennett,B.J., Farber,C.R., Ghazalpour,A., Pan,C.,
            Che,N., Wen,P., Qi,H.X., Mutukulu,A., Siemers,N., Neuhaus,I.,
            Yordanova,R., Gargalovic,P., Pellegrini,M., Kirchgessner,T. and
            Lusis,A.J.
  TITLE     Unraveling inflammatory responses using systems genetics and
            gene-environment interactions in macrophages
  JOURNAL   Cell 151 (3), 658-670 (2012)
   PUBMED   23101632
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK002429.1 and AC121101.8.
            
            On Sep 6, 2006 this sequence version replaced NM_026844.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK002429.1, SRR1660811.224335.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164140
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-607               AK002429.1         1-607
            608-1440            AC121101.8         106202-107034       c
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 63.28 cM"
     gene            1..1440
                     /gene="Cmc2"
                     /gene_synonym="1110046L09Rik; 2310061C15Rik; DC13"
                     /note="C-X9-C motif containing 2"
                     /db_xref="GeneID:66531"
                     /db_xref="MGI:MGI:1913781"
     exon            1..86
                     /gene="Cmc2"
                     /gene_synonym="1110046L09Rik; 2310061C15Rik; DC13"
                     /inference="alignment:Splign:2.1.0"
     exon            87..193
                     /gene="Cmc2"
                     /gene_synonym="1110046L09Rik; 2310061C15Rik; DC13"
                     /inference="alignment:Splign:2.1.0"
     CDS             113..352
                     /gene="Cmc2"
                     /gene_synonym="1110046L09Rik; 2310061C15Rik; DC13"
                     /codon_start=1
                     /product="COX assembly mitochondrial protein 2 homolog"
                     /protein_id="NP_081120.2"
                     /db_xref="CCDS:CCDS40489.1"
                     /db_xref="GeneID:66531"
                     /db_xref="MGI:MGI:1913781"
                     /translation="MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGHCNDLDREM
                     RKCLKNEYSERRTRSREHGAAMRRRLSDPPEEAGR"
     exon            194..265
                     /gene="Cmc2"
                     /gene_synonym="1110046L09Rik; 2310061C15Rik; DC13"
                     /inference="alignment:Splign:2.1.0"
     exon            266..1440
                     /gene="Cmc2"
                     /gene_synonym="1110046L09Rik; 2310061C15Rik; DC13"
                     /inference="alignment:Splign:2.1.0"
     regulatory      588..593
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cmc2"
                     /gene_synonym="1110046L09Rik; 2310061C15Rik; DC13"
                     /note="hexamer: AATAAA"
     polyA_site      607
                     /gene="Cmc2"
                     /gene_synonym="1110046L09Rik; 2310061C15Rik; DC13"
                     /note="major polyA site"
     regulatory      1404..1409
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cmc2"
                     /gene_synonym="1110046L09Rik; 2310061C15Rik; DC13"
                     /note="hexamer: AATAAA"
     polyA_site      1436
                     /gene="Cmc2"
                     /gene_synonym="1110046L09Rik; 2310061C15Rik; DC13"
ORIGIN      
        1 gcgtcggtgc ttgcaagtcc taagggagct gcgggctccg tgtcggtgac ttctctttct
       61 gtgcttcttg taggggctga gtgacggtct gctcctactc gccctcctaa cgatgcatcc
      121 ggacttgtct ccacacttgc acaccgaaga atgcaacgtc ctgattaacc tgctaaagga
      181 atgtcacaaa aatcacaaca ttctgaagtt tttcggccat tgcaacgacc tcgaccggga
      241 aatgaggaag tgtttgaaga atgagtactc agagaggagg accaggagca gggagcacgg
      301 cgccgccatg cgacggaggc tttctgaccc tccagaggaa gctgggagat aggctcactg
      361 gcgcctcggc tgggagacct gaaggtggct ggtggccgaa gaatatcctt tcttatttgc
      421 ctctaggact ctttgtatga aaagtgctct gaagaacgga accataggga atcaggagaa
      481 tggcttctca gtacctgctg aacttgagtg ccacgcgctg tgccagggag agtttcctct
      541 gctgctgccc tgaatctgca tccacccagt cctgactcgc ctcctgcaat aaagtcactg
      601 gacagcgtgg gcctcccttt ctttaacctc ttcggggctg gagcggaagt ggcgcctgtg
      661 ggttcctctg tctgagaaca tggcggttga aggttgtgca gtgaagacac aaaccaacgt
      721 gggaattcca gggcccttcc agcagagcca accataccaa agttccctgt tttattgttt
      781 taaagagcca ttttctgaaa ggtcagatag tgctagttag ctttcaaatt atggatggaa
      841 attatttgaa aaaaaaaaaa aaaagaagaa cctgtaagtg accacgtacg tgttccctac
      901 cattctttaa ataacacagc acagctatca ctttacagtc catctgttag gcattatcta
      961 agctagagct agtgtggcca tgggtggaag tgtgtaggtt ttatgcaaat attttgcttt
     1021 taagatttga ggatagaggg ttctagaagc agcactgcct gaccctctgg agtgatgact
     1081 aatgacgtgg gtaagatcgc atccagctag ggtcccatcg tttggttaaa taccacgggt
     1141 accagttaac tcctgggctc taacctagag gtccagtgtt cttcttgtgt tcacacacgt
     1201 acacacacac acaccccatc cccacctcac aaatactact ccccatggtt tctgagacct
     1261 gtgacagtta gaaacccagc agcttcagcc ggagccacat cagggtgtct cgggccttct
     1321 caggagccac aagacagacg aagctataag cttctcgtag tgtttggtgt atataatgta
     1381 tgtatgagac cccattggtg tttaataaat gattttccta ttgcaggaga agctaatcaa
//
