LOCUS       NM_026442               1188 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus C-X9-C motif containing 1 (Cmc1), mRNA; nuclear gene
            for mitochondrial product.
ACCESSION   NM_026442
VERSION     NM_026442.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1188)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ170455.1, AK020626.1 and AC157475.2.
            
            On Feb 16, 2011 this sequence version replaced NM_026442.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC056653.1, AK002667.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164141
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               CJ170455.1         2-117
            117-615             AK020626.1         1-499
            616-1188            AC157475.2         158208-158780       c
FEATURES             Location/Qualifiers
     source          1..1188
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 69.87 cM"
     gene            1..1188
                     /gene="Cmc1"
                     /gene_synonym="2010110K16Rik; 2010312P05Rik"
                     /note="C-X9-C motif containing 1"
                     /db_xref="GeneID:67899"
                     /db_xref="MGI:MGI:1915149"
     exon            1..180
                     /gene="Cmc1"
                     /gene_synonym="2010110K16Rik; 2010312P05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             162..482
                     /gene="Cmc1"
                     /gene_synonym="2010110K16Rik; 2010312P05Rik"
                     /note="cmc1p; COX assembly mitochondrial protein 1"
                     /codon_start=1
                     /product="COX assembly mitochondrial protein homolog"
                     /protein_id="NP_080718.1"
                     /db_xref="CCDS:CCDS40800.1"
                     /db_xref="GeneID:67899"
                     /db_xref="MGI:MGI:1915149"
                     /translation="MALDPAEQHLRHVEKDVLIPKIIREKARERCSEQVEDFTRCCKD
                     SGILMVLKCRKENSALKDCLTAYYNDPAFYEECKLEYLKEREEFRKTGVPTKKRLQKL
                     PTNM"
     exon            181..270
                     /gene="Cmc1"
                     /gene_synonym="2010110K16Rik; 2010312P05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            271..361
                     /gene="Cmc1"
                     /gene_synonym="2010110K16Rik; 2010312P05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            362..1188
                     /gene="Cmc1"
                     /gene_synonym="2010110K16Rik; 2010312P05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      598..603
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cmc1"
                     /gene_synonym="2010110K16Rik; 2010312P05Rik"
                     /note="hexamer: AATAAA"
     polyA_site      616
                     /gene="Cmc1"
                     /gene_synonym="2010110K16Rik; 2010312P05Rik"
                     /note="major polyA site"
     regulatory      1167..1172
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cmc1"
                     /gene_synonym="2010110K16Rik; 2010312P05Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1188
                     /gene="Cmc1"
                     /gene_synonym="2010110K16Rik; 2010312P05Rik"
ORIGIN      
        1 aagggacgtg ggcgtggcca gttctcactg cagaggtcgc gctccggctc tcccgcccga
       61 ggctgcgggc gagcaggcgg ctgcgcgcgc agcccagcgc aggctcctcc cctcccggcc
      121 ccttagcgcg tgagtggctt gctgcttctc cgccctccga gatggcgctg gaccccgcag
      181 agcagcatct gagacacgtc gagaaagatg ttctgatccc aaagataata agagaaaagg
      241 ccagagaaag gtgctccgaa caagttgaag attttaccag atgttgcaag gactctggga
      301 tccttatggt attaaaatgc cggaaagaga attctgcact gaaagactgt ctaactgctt
      361 actataatga tccagccttc tatgaagaat gcaaactgga gtatctcaag gaaagggaag
      421 aattcagaaa aactggagtt cctaccaaga agaggctgca gaagcttccc acaaacatgt
      481 aggcaaagcg ctcatcagga agtcccgtct tacggaagcc agttatcact taacccagaa
      541 atgatggact gaaacaatgt ttgctcaccc tgatcatgaa aatattgagt ttttaaaaat
      601 aaaatacaaa tatttatttc agagttctga tttattaaat atgaaatagg ggaaaaaaaa
      661 tatattgttc tcctggtctt accccaagta ctgtaactct gactgcaatc acagtgctaa
      721 ctgtcataga gtttcatgtg tacatttcct tctgatggtg caggctgatg gctagtgtgg
      781 gaagaaagga ctaaagcaaa ggaggaatgg agcgccttca acactgctaa cggcagcagt
      841 gaaccagagc cttcttcact ctacccctta gtgtgccagc cactgtggcc agcagtctct
      901 tacggcgata acttagccag cactgccatc agaggcttat gtgaaaacag atgagatttg
      961 gtgaattatt ttactgaaac ctttgacaga aaagtttctg cattgtttct tgatcttttg
     1021 aacttggcta ctgaaaatac tgtataatct tggattttaa gaagttggca ttgttagtgt
     1081 gaacttctgt tttgtgatat tgggggtttg ggaggaactg tggtaagttt ctcttttagt
     1141 gtgttaccct agtctgagct ttttatatta aaaactattt taaaaaaa
//
