LOCUS       XM_017320649            9777 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus clock circadian regulator (Clock),
            transcript variant X4, mRNA.
ACCESSION   XM_017320649
VERSION     XM_017320649.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Mar 13, 2024 this sequence was replaced by
            NM_001305222.2.
            
            On Sep 21, 2020 this sequence version replaced XM_017320649.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9777
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..9777
                     /gene="Clock"
                     /gene_synonym="5330400M04Rik; KAT13D"
                     /note="clock circadian regulator; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     mRNAs, 36 ESTs, 1189 long SRA reads, 15 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 40 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:12753"
                     /db_xref="MGI:MGI:99698"
     CDS             382..2946
                     /gene="Clock"
                     /gene_synonym="5330400M04Rik; KAT13D"
                     /codon_start=1
                     /product="circadian locomoter output cycles protein kaput
                     isoform X2"
                     /protein_id="XP_017176138.1"
                     /db_xref="GeneID:12753"
                     /db_xref="MGI:MGI:99698"
                     /translation="MVFTVSCSKMSSIVDRDDSSIFDGLVEEDDKDKAKRVSRNKSEK
                     KRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETTAQSDASEIRQDWKP
                     TFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPE
                     GEHSEVYKILSTHLLESDSLTPEYLKSKNQLEFCCHMLRGTIDPKEPSTYEYVRFIGN
                     FKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMCTVEEPNEEF
                     TSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKG
                     KSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIE
                     ESLPETAADKSQDSGSDNRINTVSLKEALERFDHSPTPSASSRSSRKSSHTAVSDPSS
                     TPTKIPTDTSTPPRQHLPAHEKMTQRRSSFSSQSINSQSVGPSLTQPAMSQAANLPIP
                     QGMSQFQFSAQLGAMQHLKDQLEQRTRMIEANIHRQQEELRKIQEQLQMVHGQGLQMF
                     LQQSNPGLNFGSVQLSSGNSNIQQLTPVNMQGQVVPANQVQSGHISTGQHMIQQQTLQ
                     STSTQSQQSVMSGHSQQTSLPSQTPSTLTAPLYNTMVISQPAAGSMVQIPSSMPQNST
                     QSATVTTFTQDRQIRFSQGQQLVTKLVTAPVACGAVMVPSTMLMGQVVTAYPTFATQQ
                     QQAQTLSVTQQQQQQQQQPPQQQQQQQQSSQEQQLPSVQQPAQAQLGQPPQQFLQTSR
                     LLHGNPSTQLILSAAFPLQQSTFPPSHHQQHQPQQQQQLPRHRTDSLTDPSKVQPQ"
ORIGIN      
        1 gcgaggggag gggcgagtgc agagcctggc cggccgcgga gccccgcgcc cacgacgcat
       61 gcgccgggag gcagcgcaat cacggactcg gctggcggct accggctgga gagaggaaac
      121 cccggacggc gagagcgcga aggaaatctg gccgccgccg cgcacgcgct cccgtgaaag
      181 aaaagcacaa gaagaaactt ttacaggcgt tgttgattgg actagggcaa cgattcccaa
      241 aatcaccagc aagagttctg atggtcagtc acacagaaga cggccttgcg tctgtgggtg
      301 ttggagactc cattctaaag atataaaaag tgaaagagga gaagtacaaa tgtctaccac
      361 aagacgaaaa cataatgtgt tatggtgttt accgtaagct gtagtaaaat gagctcaatt
      421 gttgacagag atgacagtag tatttttgat ggattggtgg aagaagatga caaggacaaa
      481 gcaaaaagag tatctagaaa caaatcagaa aagaaacgta gagatcagtt caatgtcctc
      541 attaaggagc tggggtctat gcttcctggt aacgcgagaa agatggacaa gtctactgtt
      601 ctacagaaga gcattgattt tttgcgcaaa cataaagaga ccactgcaca gtcagatgct
      661 agtgagattc gacaggactg gaaacccaca ttccttagta atgaagagtt tacacagtta
      721 atgttagagg ctcttgatgg ttttttttta gcgatcatga cagatggaag tataatatat
      781 gtatctgaga gtgtaacttc gttacttgaa catttaccat ctgatcttgt ggatcaaagt
      841 atatttaatt ttatcccaga gggagaacat tcagaggttt ataagatact ctctactcat
      901 ctgctggaaa gtgactcatt aacccctgag tacttaaaat caaaaaatca gttagaattc
      961 tgttgtcaca tgcttcgagg aacaatagac ccaaaggagc catccaccta tgaatatgtg
     1021 agatttatag gaaattttaa atctttaacc agtgtatcaa cttcaacaca caatggtttt
     1081 gaaggaacta tacaacgcac acataggcct tcttatgaag atagagtttg ttttgtagct
     1141 actgtcagat tagctacacc tcagttcatc aaggaaatgt gtactgttga agaaccaaat
     1201 gaagagttta catctagaca cagtttagaa tggaagtttc tatttttaga tcacagggca
     1261 ccaccaataa taggctattt gccatttgaa gtcttgggaa catcaggcta tgattactat
     1321 catgtggatg acctagaaaa tctggcaaaa tgtcacgagc acttaatgca atatggaaaa
     1381 ggcaaatcgt gttactatag attcctgacc aaaggccagc agtggatatg gcttcagact
     1441 cattattata ttacttacca tcagtggaat tcaaggccag agttcattgt ttgtactcac
     1501 actgtagtaa gttatgcaga agttagggct gaaagacggc gagaacttgg cattgaagag
     1561 tctcttcctg agacagctgc tgacaaaagc caagattctg ggtctgacaa tcgtatcaac
     1621 acagtgagtc tcaaggaagc actggaaagg tttgatcaca gcccaactcc ttctgcctcc
     1681 tctagaagct cacgaaagtc atctcacacc gcagtctcag acccttcctc cacaccgaca
     1741 aagatcccta ctgatactag cactcctccc agacagcatt tgccagctca tgaaaagatg
     1801 acacagcgga ggtcgtcctt cagcagtcag tccataaact cccagtcagt tggtccatca
     1861 ttaacacagc cagcgatgtc tcaagctgca aatttaccaa ttccacaagg catgtcacag
     1921 tttcagtttt cagctcagtt aggagccatg cagcatctaa aagaccagct agagcagcgg
     1981 acacggatga tagaggcaaa tattcatcgg cagcaagaag aactaaggaa aattcaagag
     2041 caacttcaga tggtccatgg tcaagggcta cagatgtttt tgcagcaatc aaaccctgga
     2101 ttgaattttg gttctgttca actttcctct ggaaattcta atatccagca actcacacct
     2161 gtaaatatgc aaggccaggt tgtccctgct aaccaggttc agagtggaca tatcagcaca
     2221 ggccagcaca tgatacagca acagacttta caaagtacat caactcagag tcaacagagt
     2281 gtaatgagtg gacacagtca gcagacgtct cttccaagtc agacaccgag cactctcaca
     2341 gccccactgt acaatacgat ggtgatttcc cagcctgcag ctgggagcat ggtccagatt
     2401 ccatccagta tgccacagaa cagtacccag agtgctacag tcactacgtt cactcaggac
     2461 agacagataa gattttctca aggtcagcaa cttgtgacca aattagtgac tgctcctgta
     2521 gcttgtgggg ccgtcatggt accaagtacc atgcttatgg gtcaggtggt gactgcctat
     2581 cctaccttcg ccacacaaca gcagcaggca cagacattat cggtaacaca acagcagcag
     2641 cagcagcagc agcagccacc acagcaacag caacaacaac agcagagttc ccaggaacag
     2701 cagcttcctt cagttcagca gccagctcag gcccagctgg gccagccacc acagcagttc
     2761 ttacagacat ctaggttgct ccacgggaat ccttcgacac agctcatcct ctctgctgcc
     2821 tttccactac aacagagcac tttccctcct tcgcaccacc agcaacacca gcctcagcag
     2881 caacagcagc ttcctcggca caggactgac agcctgactg acccttccaa ggtccagcca
     2941 cagtagcaca cacacttcct ctctgacatg cgagaggaag gggatggcca gaaagaatcg
     3001 ctcagttggc atgcggtcag aagttgaaca gtttcacgag ggtggtcttg agtgttcagt
     3061 cccttgatga gacggtaggg aagtgctgcc cagtgcttca gatgtccatt aaataccagc
     3121 cagtgggaaa tggtcatagg gacacagcca attctgacag tttctttgcc caggtatttt
     3181 ttgatagaaa gagtatattg ccaaatgcta acaagctcag ctatcaacca gatctttact
     3241 gaatccgaag agcactaaca gtgttggtag ctttagtggg tctgtgcctg catcaaatat
     3301 tacagagggc acaccactgc caggggtttg cttagaatgc catgaagata gtccagtagt
     3361 taatagtccc caccccaaac tcctctccct gttcagacaa tgatggaacc gtgatgactt
     3421 tgagaatgtt gtgcaggttt gaattcactg tgtacagatg ctgtagtgtc tctgtgtctg
     3481 gatggaggag agaaagccac tttgatacag aaagcattat ctgtccctca caggtatgag
     3541 tgcatttcat taggtttgac accatgtaca aactgataac aacctctctt ttttcatttt
     3601 gtttacaaca cagtagtgtt ctcgttactt ttccagggca caagtctttt tgtccgtgct
     3661 ttggctgtga tgtcacagtt tgttcagtga ggtaacaatg tgctgctggg aatggatttt
     3721 ttttaaggtt aaattattgc tacatttcca cttactcaga aatatccctt atttcattat
     3781 ttttcaatta tgtttgagag aattgcactg ctttattatt ttagatggtt ggttgagagt
     3841 ttaatcacat attttgatat atttcatagt tggaatattt atgtaaatgg ttttcaacaa
     3901 gcctgaaagt aatttcaaga atgtttcagt tgtaagagta aagtttgcac acaaaacatt
     3961 ttaggcactt ttttaacatt ctcagaggtg ggaattttaa cttttaggat ttgttggaat
     4021 ctttttatta tctttaaaaa tttcaatgct tcttttagtc agaaatgatt cagggttatt
     4081 tgaggggaaa aaacccatag tgccttgatt ttaattcagg tgataactca ccatcttgaa
     4141 ttcattgtct ggtttcagta gcagttttga aaccttagta catttttagc agcagtgtca
     4201 ttctcaagtc cccatgagga ctgctgcgtc tcttgggctg cctgacagcg tcacagctgg
     4261 gaatgggatc ccaaaatcgt ttcctgtttg catcttcctc taaagctaag taactctttt
     4321 aggaattacc agtaaatact tgctcagaga caagggacaa gttgtcttta attttcattg
     4381 cagcactaga ataatgtaac tcacatgctt tttaaacatt aagatttcat ttggcaatat
     4441 cattctctac aggtaataaa ctccaacaaa gctacataca ttttaaaagg cattttttta
     4501 gattttatgg tactaataat gagtttttca attaaagaac aaaagatcag taggatatag
     4561 aatatcaagt attactgaga aaagggagga taagtgtggc acattagaat tgaccttaaa
     4621 aggaaagtat gtgatggtga ggtgctaaac tggtttcagc agtgcagata acctaaggca
     4681 gagttgctag atcagggctt ggggaactcg gagtcagcta tctgtctcta gctttgctct
     4741 catcatcagt aagtgtgtct ttgttttcct gtttacctga ctgcaattaa gttagcaagt
     4801 tagtgataaa aagaaaacaa ccaaagaaaa ttggtaccta ctcttctgca taagaagtgt
     4861 gtctagatac cagtcagtaa ctcacatatc acagagttct tctagctgac attcatacga
     4921 ataccagaaa tagttgtgag aatacacatt tatgcaagtt tgtgcacacg tgacgaaatc
     4981 aatgtaagtc gagcacccac attgcttttc tcccttccac attgccttct tctctttggc
     5041 cattccatgt cctcggagtc ggagctgtgc ctcgtttatc tttttgcatc acatagcgat
     5101 aagaatttag ctacaggaga tacaacatgc tagttatgta atgcctgctg ttcttcacag
     5161 ttcatctccc tgcttaaaag tagcagttga taagaaactc tagctgctaa ggctgctgtc
     5221 cacacggaga tgcatgctgg gcaacagttg tcagcactag ctgcctctta gctccttaat
     5281 tcttggttcc tttggatggc aaactgtctt tgtctgctcc ccacacgact ccagtattct
     5341 gaagaaagtt catcttttgc ctgttcattt ctgtagccaa agctgactga aaccccaaat
     5401 ctaaatcatg aaaagatacc aaaaagaaac acttctcagc ttcttagaaa ccttaacttc
     5461 tcttgctgta tttcatggat ttgattttct ttgaaatttt tgattctggg cagcgccttt
     5521 taattaagaa attgttagga tgaaggtcaa acaggttctc attgccctgc aggtaccttg
     5581 ctctggactg cttctgtatg gggtgacttg gggttgctga acacacagga ttagaacagt
     5641 aaacacaaag ctgcccttga ggctggcgtt aaaccagagc ctcaatattg aaaatatcaa
     5701 gtcctctttc cttccttaga gacgagactg tgagaggaaa gcaactgtgg taggtgggct
     5761 tgcttgcaca tgagcaccaa gaccattccc caagctctat cctcagggta gcatttagag
     5821 tgctgtgttc tgctgtcaca tagacatggc ttagggatgt agcactaata aaagaatgcc
     5881 cgtgcttttg aatagttgtg atagcaaact ctaggctaac tagcaagtgt ttgaattctg
     5941 tgtgctgtat agtagttggt cattgcctta aagcagtctc ttggaagttg ggagcactga
     6001 agcagtccaa ccatatatgg gcatcacgtt gagggagatg agccttgttc aagccttaga
     6061 aaggaccctt agtctacaca ggtagattct tttcacttgg atattactgt gtttaaaatg
     6121 tttccactat gttgaggcag ttttttaaag tggaacacag ataggatttt tagtatttct
     6181 ttttttgttt ctttggtgat taaaggtttg ttggtagaca tttgtgtaaa agttgttcaa
     6241 gcctatcatc tttccagtac ttgtggtcct gttcttagta ccagagtcca caatggaaag
     6301 tgtaaacact ggatattaat attgctgagg gtgcatagcc aggtgtgagc tgactggaac
     6361 ttctcagtgg tgaagaaaca gcacaacggc acttgccatt ttcatagtga ttgcataaag
     6421 agaccttcta agtttgtctg gattgagtga acactcttct aagaggagct tctcaagtaa
     6481 atgcaaagga aaagagttga ctatttttat agcatattta atatatttgt atataactat
     6541 gagtgtagta ggaaccctcc acatgcctcc cacttttcta attccctccc cttctgccgt
     6601 agccctagtc cagcctcatc cgcatgggta atgtgcctac tgtcagccta cctaccaaaa
     6661 gatagtgctg ctgctttctg agacaggtga gatcagactc tcatgcctgg ggatccttat
     6721 gggaggaata gcacacactt agaacaacat accacagttt aagagcatca ttttgaaagg
     6781 taataagcac tttattgcaa ttattcattt agataaagtt tgtatcttag gcattaaccg
     6841 tttttaaagg atccctaatc atcacttagg tgaaatgata aacgacacat ttctgagaaa
     6901 tgttcaggtc cagtgaaccg tagcaggttt atgggaatga tttcaaggta gccaaataaa
     6961 ctctgacttt tgttttgaat gtggtggagt caggagattg tagatgtgta gtttgattta
     7021 aacactattg taaacctatc ttgcctattg tgtggacacc aaaagagacc aatgagcctg
     7081 tttattttca gaggtctagg aatatgcatc tgtctgagta gatatacaga actaatctat
     7141 aaacggttgg tagtaatatt ttaggataca gtaacttcaa gaattattga gtgttttaaa
     7201 tgtgccctga aatgttggca tgtcatttca gcgttcccat ttgagttgct cttgtaatat
     7261 ttttgcacaa aaaggactga gaaaagactg ctttggttga agaaaactat aatttggtct
     7321 tattttaatg tctcctgtgg aaacactgga ggtaaatttg ttggcatagt tactaattca
     7381 ggatatttaa aacagtgttg aacagctcat cagaaattaa gcaaacttat atatttaaaa
     7441 attaaaaatc tttttttcca tgtgactgtt ttgcatattt tttccgttgt cataccacac
     7501 tacattcctt ggtttttttt ctgaaataat aatttgtgaa agatttgagt attcaacaat
     7561 attttttaag acgcctgggt tttcccagga aaatgtccta gtgaagtaag ttatagctat
     7621 atatagtttg tggagactat tgagattcca tcaacaccac cagcaaacac tgaggtgctg
     7681 aaccaagaga caatcataat agtaagtatt tacaggactt aggagaggct gcaaggaaca
     7741 cttgttccca aagcagttct ctgggtctcc taaataaaat ggctgtgtat ttagatttct
     7801 acattgtgta gttggtgatt tatttaattt attgcatcat tttcttgtcg ttggagaact
     7861 tgctcttgtt tggggcagtc actaccctac cctctagtga ctccccactg acagatcatt
     7921 gggatccatt gtgcatcacg atggtgatgg agggtgaacc tgaatgtccc tgcacttccc
     7981 tcctgctctg aattcattta agaaaagaac attaaaagct aactcctttt agctctggtc
     8041 acatagtgtc acttgttgcc ttctctgatt catgggcact ttttatacat tcgtttcccc
     8101 aacacagtca aaaaggccag taagacagaa ccaagggcac atgttgcctc tgttgcccat
     8161 ttggggaaat gctagcaaag taatatctat taatgactgt cgtcactaca tccatatata
     8221 gaagtccttc tatatagttg aacagtgtat gcacactgaa aactttgaaa agttggctgt
     8281 cttttagatc ctccatagtc cagtaaagtg gtgcttgaac atagggagtc tagttgtgtg
     8341 aggatccttc ctgctcacgt gaccaaagtg ggctatggtc ctcctttagc acggttgcgg
     8401 ctctggagtc ccacagtcag ggtctaacac acatagggat cccctggaga gcagttatta
     8461 aaatactgtc agacacaaac tgggtttatt acttaagagg catctaactc tgaggggcat
     8521 aaattcaaaa tataccattt ttagatgttt gcttttaaat cagtgaaaac aaactgtgac
     8581 atcgctttaa gaaatgactt ttcaaatgtt ttgagttggc ctgtactggt tcacatttat
     8641 tgctgacaat ggtttgaaga gtactacaaa gcttatttaa aaaaaaaaaa aaaaaagaaa
     8701 gaaggaaaga aagaaagaaa gaaaaagtta agttgatttc aagcaaagac attgccttca
     8761 aaaagtccct tactaataag caaggggtat gtcagccaga actggaattt acaccattct
     8821 aaaattattt tgaaatctat tttactgtgg tttaagttgg gaaaagctcc agtatagcac
     8881 tttcatattc accctgtgta aagattaaag cccaaagaca aattaatgct gtattaaaac
     8941 cagttagtgc aaaaactata aatataagtt ttatctttgt aaactctgtt aaatcagttg
     9001 gtagttgtac aaacatgcac cagatttctc ttaagttccg tgtggtcttg ctgtgctgtt
     9061 cctgacattg ctgtccttac tgcttggttc tgggtttaaa ctaaaacaag aataagcaga
     9121 gcgcatccct tgcagctcca aaagaggggc acgatatggc tgtgtatctc cagatgagaa
     9181 ttcctcccct cctaaagcaa acattgaatt gagacttaca ctctttcagg tgtttacccc
     9241 tttgccaaaa ctagaaatat gaaggattat gagtgatttc aatggtgcta tattaggttc
     9301 cctggttttc ataagctatg tttggaaata cagcactgaa taaaatgcag actcttgcta
     9361 ccagctgcat attgccgttg taattgggtc cagtacaatt ggatatactt gtttatcaaa
     9421 gttacccttt gaagaagtaa aactggtaca ccagcatgcc ttcactcagg cctcctgctg
     9481 tatgacatgc acagctttaa cgtaaaatca caacaaacca tcataatgct cttttctcta
     9541 gacccttgta atgtattcag aacctaaaac tacagcaaaa gagccaagca gtagcaatgt
     9601 ttgttttttt ttttttttgt aaatgtaaaa ataattagct ctagacctgt ttcctttgat
     9661 ttaaaaataa agaatgcctc agtgctgctc tcagtgtcac ctgcttatgt ggcacatatg
     9721 tgtaagagtc ccattttgga tttatagaac aactattaaa tgtttttaaa tctgtca
//
