LOCUS       NM_030179               4055 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus CAP-GLY domain containing linker protein family,
            member 4 (Clip4), transcript variant 1, mRNA.
ACCESSION   NM_030179 NM_029080 XM_917909 XM_925344 XM_925347 XM_925349
VERSION     NM_030179.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4055)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 4055)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154569.2 and AC154458.2.
            
            On Jun 6, 2008 this sequence version replaced NM_030179.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC035226.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849383, SAMN00849387
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-123               AC154569.2         10078-10200         c
            124-271             AC154569.2         2132-2279           c
            272-411             AC154458.2         23153-23292
            412-505             AC154458.2         24995-25088
            506-667             AC154458.2         25971-26132
            668-786             AC154458.2         27752-27870
            787-1023            AC154458.2         30701-30937
            1024-1159           AC154458.2         35043-35178
            1160-1300           AC154458.2         48886-49026
            1301-1390           AC154458.2         51888-51977
            1391-1534           AC154458.2         52703-52846
            1535-1669           AC154458.2         55401-55535
            1670-1793           AC154458.2         58380-58503
            1794-1858           AC154458.2         61890-61954
            1859-1931           AC154458.2         74088-74160
            1932-4055           AC154458.2         80424-82547
FEATURES             Location/Qualifiers
     source          1..4055
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 42.9 cM"
     gene            1..4055
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /note="CAP-GLY domain containing linker protein family,
                     member 4"
                     /db_xref="GeneID:78785"
                     /db_xref="MGI:MGI:1919100"
     exon            1..123
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            124..271
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            272..411
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            412..505
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            506..667
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            668..786
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            787..1023
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1159
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1160..1300
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1390
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1391..1534
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1535..1669
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1670..1793
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1794..1858
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1859..1931
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1932..4055
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4034..4039
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /note="hexamer: AATAAA"
     polyA_site      4055
                     /gene="Clip4"
                     /gene_synonym="1700024K14Rik; 1700074B05Rik;
                     4833417L20Rik; 5830409B12Rik; Rsnl2"
                     /note="major polyA site"
ORIGIN      
        1 attaaagacc aacacctttc tgcagcatgg ggaagaacta gaaatgccag cgcccacatc
       61 tgctagggtt tcaatgtcac ttctttctgg ttatgagaag atggaagaga tgagaagtat
      121 gaggtggttt tctagaagat gaccatagag gacctcccgg atattccatt ggaaggaagc
      181 tctctgattg gaagataccc atttttattc acaggctcag atacatctgt tatcttctcc
      241 atttctgcag caccgatgcc ttcggactgc gagttttctt tctttgaccc taacgatgca
      301 tcatgccagg aaattctctt cgaccccaaa acttcagtct cagaattatt tgctatttta
      361 agacagtggg ttcctcaggt ccagcagaac atagacatta ttggaaatga gattcttaag
      421 agaggctgca atgtgaacga tagagacgga ctgacggaca tgactctgct acattacact
      481 tgcaagtctg gggctcatgg catcggtgat attgagacag ctgtaaaatt tgctgctcaa
      541 cttatagacc tgggagcaga cgcgagtttg cggagtcgct ggacgaacat gaacgctttg
      601 cattacgctt cgtactttga tgtcccagag cttatcaggg tgattttgaa gacatcgaaa
      661 ccaaaagatg tggatgccac ttgcagcgac tttaattttg ggacagccct gcacattgca
      721 gcacataact tgtgtgcagg agccgtgaaa accttgctgg agctgggagc gaaccctgcc
      781 tttaggaatg acaaagggca gatccctgca gaagttgttc cagacccagt ggacatgcct
      841 ctggagatgg ccgatgctgc agcgatcgcg aaggaaatca aacagatgct cttggatgcg
      901 gtgcctctgc cctgtaccag cgctaaggcc gtgcttccaa actccgatca caccaccagc
      961 agggccatgc tgacatctct cggcctgaag ttgggggacc gtgttgtcat cgcagggcag
     1021 aaggttggaa cattaagatt ttgtggaaca acggagtttg caagcgggca gtgggctggc
     1081 attgagctgg acgagccaga agggaagaac aacggcagtg ttgggagagt ccagtacttc
     1141 aagtgtgccc ccaaatacgg tatttttgct cccctttcaa agataagtaa attaaaagac
     1201 gggaggaaga ccaccacaca cactccttcc acgagagcca ccccacacgc ccgatcccag
     1261 aaggtcgatg tagcccactt cacatccaga gtcaattccg ggttgacgac atctaaaaag
     1321 gagactgctt ctgaatccac actgacattg cctcccagtg aagaaccgaa aactgtagcg
     1381 gaaaatgacg ctgcccagcc tgggtccatg agcagttcct cctcctcctc ctccctggac
     1441 cacaagcaga gctacccgaa gaagctgacc acaagcagcg gtggcaagaa gactctgagc
     1501 aaaagcccct ctctcccgtc cagagccagt gctggtttga aatcttcagc cacatctgca
     1561 gcaaataaca gtcaccatga aggagcgctc caccttggag aaagggtgct ggtcgtaggc
     1621 cagcgagtag gcaccattaa gttctttgga acaacaaact ttgctccagg gtattggtac
     1681 ggcatagagc tggagaagcc ccacgggaag aatgatggtt cggttggagg tgtacagtat
     1741 tttagttgct ctccgagata tggaatattt gcgcccccgt ccagggtaca gaggctatca
     1801 gattccctgg atacgctttc agaaatatct tcaaataaac agaatcactc ttatcctggt
     1861 tttaggagaa gtttcagcac cacctctgct tcttctcaaa aagagattaa caggagaaat
     1921 gcttttgcca agaccaagac caccttgcgc cgcagctgga gcagttccac cacggcaggt
     1981 ggtctggagg ggaccgtgaa gctccacgag gggtctcagg tcctgctcac aagctctaac
     2041 gaaatggcca cggttaggta cgtgggtccc acggactttg cctcgggcat ctggcttgga
     2101 ctagagctcc gaagtgccaa ggggaaaaat gacggtgctg tgggtgacaa gcgctatttc
     2161 acctgtaagc cgaactacgg agtgctggtt agaccaagcc gagtgaccta ccgcgggatt
     2221 agtgggtcaa agctcattga tgagaattgt tgagttaacc gcctgaagcg ctgagcttct
     2281 ctgaatatat atatatatat gtgctagatg aaaaataagg cctatgacaa agggtttact
     2341 ttacttagct attatgtgac agctgaaaat agagcgacct tcataaaaat atccaaagga
     2401 acacaggtat gaactttgag ggtcatggtt cttttgaaaa taatcagaat gagcacttta
     2461 aaaaaaaaaa acaaaaaaaa agttaggtcc caagaaaatt ttgggactta aaaaaaaaaa
     2521 aaaaaaaaag aacacgctac ttagcaatat gttgtggttc ctttgccatc gggcttcagt
     2581 tttgcacacg gtatacgttc ttcacagagt gaaagttttc accaccagct tccggatgtt
     2641 cacacgaccc attccctgtt aggttgttct ggaatgttcc tttccatcct ctgtggtctg
     2701 ttactaaaaa gtacctagag agcaggcaca agacagcagg tgtatctttt atattttttg
     2761 ataggctcat tggcccttcc gggataggct cccatgagca gttagaacct gggaggacgg
     2821 tgagtaccgg gtgatgtctg gctctgcctt gctcccattg acaaccacag agatctcctt
     2881 cacctgaacc actggctggt taacaccgct gagcgtgaac aagggcctcc tgactcagtg
     2941 cgtgcctcag cacacagtgt ggcctcaggt ttcccttctg cagccccacc tgaacgcact
     3001 acaggagact tgcagtcagg cttgtgagct cgaggcagaa ccttttttgc acacttaatt
     3061 taacttaagt tcccaacacg cacagcactt ttgacacatg atgcactttt tactttctga
     3121 gactttgcct tcatttcctc ctgggatata aagaaaaaaa aaactttaaa gaagtatttc
     3181 acagaatata ttgaaaatat gttgggccgg gtgtgttatc cgtgtggatg ttcatggtgt
     3241 ctgggcttgg ggtggggttg ggagtaagct gtagctgctg agttgtgccc gttacacagc
     3301 tgcagagcca cggctggttg ttcattgtcg tgggcacatg ttaaactaag cttcatgata
     3361 gtgatataat aatgttacac atgggtcttg tgttacgtat tgaagtttct gtcctgttac
     3421 gtgtaaagac ttatccacta ttgtaaatat ttagacttga aagtaccaca ctaatattgg
     3481 aacagtttgc tttatgaaat taaaagtatc cttccaaatg gaacttgctt tttgctcaga
     3541 catatactat gctgatattt tgcaatatac tatcttaaat ctaaatctgg tcactttatt
     3601 gccttttttt tttttaaaaa aaagtgtggt atttcaaaat agagttattt tcctgaaata
     3661 tatttgcaaa ttcaagctgc tttataatcc aggaatattt ttattgactg aagaaaatga
     3721 ctgctgcaat tcaaaagtga acttatttta ttatatagat gatttcttaa gagctattta
     3781 taccataata taaaatccac gactgtagtg agtctgtagt tcttcctgtt aataaatagt
     3841 atttaataat gtatgttaga gacagcaatg ccaacactga tgttattttt gaggttaaaa
     3901 aaaaaaacag ttgttctttt cccatttaga tggggatata atgtatgtgc ttatgtatgc
     3961 tacatgtaca agctaggtgt tttcttttgt gttttgctta ttaaatgtca ttcagattca
     4021 cttcttgaat attaataaag agggaagcta ttgga
//
