LOCUS       XM_036165355            5634 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus CAP-GLY domain containing linker protein 1
            (Clip1), transcript variant X45, mRNA.
ACCESSION   XM_036165355
VERSION     XM_036165355.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Mar 8, 2024 this sequence was replaced by
            NM_001428329.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5634
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..5634
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 49 ESTs, 1340 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 26 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
     CDS             322..4152
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X38"
                     /protein_id="XP_036021248.1"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPVEKTIPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQAAPGRTASPLSTAAATMVSSSP
                     ATPSNIPHKPSQSTAKEPSATPQISNLTKTASESISNLSEAGSVKKGERELKVGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMAATPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISAL
                     QEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHAN
                     KENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQ
                     HEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEME
                     DTLNKLQEAEIKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENL
                     TDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEE
                     LQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETS
                     YNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELK
                     TQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTV
                     EELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDE
                     VTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELE
                     KLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNT
                     DAQAEEDERAQESQIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDD
                     QEKQSKKKPRLFCDICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRSEERPYCEICEM
                     FGHWATNCNDDETF"
ORIGIN      
        1 aggggcggca ggggagctcg cgggcggcag cggcccgggc acggggaggg gcggcgcggc
       61 gtcttctccc ggccccgcgg cggcggcggc agcgcgtcac gttctcttcc ccgccccgag
      121 ccgaagagcc ggggaggcgg gaggcggcgg ccgcggcggc tgctgctgct gctgctggga
      181 ggcaggtgac ggcgaccagc ggcgtcccag gcgatttgac cgagaggctg agttctctat
      241 aggaacaccc acatttgtat ggatgagtgg ggaaagatag cggcagcaga caaggaaaaa
      301 gcgtcctgac ctcccgagaa catgagtatg ctaaaaccca gcggcctgaa ggcccctacc
      361 aagatcctta agccgggaag cacagccttg aagacgcctg ctgctgctgc agctccagtg
      421 gagaagacaa tacccagtga gaaagcctcg ggccctccat cctccgagac ccaagaggag
      481 tttgtggatg actttcgagt tggagaacgt gtttgggtga acgggaataa gcccggattt
      541 atccagtttc ttggggaaac tcagttcgca ccaggccagt gggctgggat tgttttagat
      601 gaacccatag ggaagaacga tggctctgtg gcgggagtgc ggtatttcca gtgtgaacct
      661 ttaaagggca tattcacccg accttcaaag ctaacgagga aggtgcaggc agaagatgaa
      721 gccaacggcc tgcaggcagc tcctgggaga actgcttcac ctctgtccac tgctgcagct
      781 accatggtgt cttcttctcc agccactccc tcaaatattc cccacaaacc gtcccagtca
      841 acggcaaaag aaccttcggc tacacctcaa attagcaacc tcacaaaaac tgccagtgag
      901 tcgatctcca acctttcaga ggctggctct gtcaagaagg gggagcggga gctcaaggtc
      961 ggagacaggg tgctggttgg tggcactaag gctggcgtag tccgctttct tggcgagacc
     1021 gactttgcca agggggagtg gtgtggtgtg gagttagacg agcctttggg gaagaacgat
     1081 ggtgctgtgg ccggaacaag gtattttcag tgtcaaccca aatatggatt gttcgctcct
     1141 gtccacaaag tgacaaagat tggcttcccg tctactaccc cagccaaagc caaagccgcc
     1201 gctgtgaggc gagtgatggc cgccacgccc gccagcctga agcgaagccc ttctgcctcc
     1261 tccctcagct ccatgagctc cgtggcctcc tctgtgagca gcaaacccag ccggacagga
     1321 ctattgactg aaacctcctc ccgctacgcc cgcaagatct cgggcaccac tgccctccag
     1381 gaggcgctga aggagaagca gcagcacatt gagcagctgc tggctgagcg ggacctggag
     1441 cgggccgagg tggccaaggc taccagccac gtgggggaaa tagagcagga gctagccctg
     1501 gcccgagatg ggcatgacca gcatgtcctg gaactagagg ccaagatgga ccagctacgg
     1561 accatggtgg aagctgctga cagggagaaa gtggagctgc tcaaccagct ggaagaggag
     1621 aagaggaagg ttgaggacct tcagttccga gttgaagaag aatcaattac caaaggcgat
     1681 cttgaggtgg ctaccgtctc agaaaagtcc cgaataatgg aactagaaaa ggacctagca
     1741 ttgagagcac aggaagtagc tgagctccga agaaggctag agtccagtaa acctcctggg
     1801 gatgtggata tgtctctctc ccttttgcaa gaaataagtg ctttgcaaga aaagctagaa
     1861 gccatccata ctgaccacca gggcgagatg acttctttga aggaacactt cggagctcga
     1921 gaggaggcgt ttcagaagga gatcaaggct ctgcacacgg ccactgagaa gctttccaaa
     1981 gagaacgagt ccctgagaag caagctcgac cacgctaata aggagaactc cgatgtgata
     2041 gctctatgga agtccaaact ggagaccgcc atagcatccc accagcaggc aatggaggag
     2101 ctgaaggtgt cctttagcaa aggcattgga acggactccg ctgaatttgc tgagttaaag
     2161 acacagatag agagactgag actagattac cagcacgaaa tagaaagttt acagagtaaa
     2221 caggactctg agcggtctgc tcatgctaaa gagatggaga ccatgcaggc caagctgatg
     2281 aagatcatta aagagaagga ggacagcctg gaggccgtca aagcgagact ggacagtgca
     2341 gaagaccagc acctagtgga aatggaggac acgctaaaca aactgcagga ggcggagatt
     2401 aagaaagaaa agtttgccag tacttcagag gaggcggtct ctgctcagac aaggatgcaa
     2461 gataccgtaa ataaactgca ccaaaaggag gaacagttta acgtgttgtc gtctgaactg
     2521 gagaagttga gagaaaattt aacagacatg gaggcaaaat ttaaagagaa ggatgatcga
     2581 gaagatcagc tggtaaaggc aaaggaaaaa ttagaaaacg acattgcaga aataatgaag
     2641 atgtcaggag ataactcttc tcagctgaca aagatgaatg atgaattacg tctgaaggaa
     2701 agatccgtgg aagaactcca gctcaagctt acaaaggcca atgaaaacgc cagttttctg
     2761 cagaagagta ttggcgaagt gactcttaaa gctgagcaga gtcagcagca agcagccaga
     2821 aaacatgaag aagaaaagaa agagttggag gaaaaactgt tggaactgga aaagaagatg
     2881 gaaacaagct acaaccagtg tcaggacctg aaagctaagt atgaaaaagc cagttctgag
     2941 actaaaacaa agcatgaaga aatcctgcag aacctccaga agatgctggc ggacacagag
     3001 gataagctga aggctgctca ggaggcgaac agagatctga tgcaggacat ggaggagctg
     3061 aaaacacagg ccgacaaagc caaagctgct cagactgcag aagacgccat gcagatcatg
     3121 gaacagatga ccaaagagaa aacagaaacg ctggcctcct tggaggacac caagcaaaca
     3181 aatgcaagac tacagaatga attggacaca cttaaggaaa acaacttgaa aactgtggaa
     3241 gagctgaaca agtcaaaaga actgctgagt gtagagaacc aaaaaatgga agaattcaag
     3301 aaagaaatag aaaccctaaa gcaggcagca gctcagaagt cccagcagct ttcagcactg
     3361 caggaagaga acgtcaaact tgccgaggag ctggggagaa cccgggacga agtcacaagt
     3421 caccagaagc tggaagaaga acgatctgta ctcaataatc agttgttaga aatgaaaaag
     3481 agagaatctg agttcagaaa agacgccgat gaagagaaag cctccttgca gaagtcgatc
     3541 agcctcacca gtgccttgct cacagagaag gacgcggagc tggagaagct gaggaatgag
     3601 gtcacagtgc tcaggggaga gaatgccacc gccaagtccc tgcactcagt tgtgcagaca
     3661 ctggagtctg ataaggtgaa gcttgagctc aaggtcaaaa acttggaact tcaactcaag
     3721 gagaacaaga ggcagctcag cagctcctca ggtaacactg atgctcaggc ggaagaggat
     3781 gagagagccc aggagagtca gattgatttc ctcaactcgg taatagtgga tcttcaaaga
     3841 aagaaccaag acctcaagat gaaggtggag atgatgtctg aagctgcact caatggcaac
     3901 ggggaagacc tgaacagtta tgacagtgat gaccaggaaa agcagtccaa gaagaaaccc
     3961 cgcctcttct gtgacatctg tgactgcttt gacctccacg atacagagga ctgtcccacc
     4021 caggcacaga tgtcggaaga tcctccccat tccactcacc atggcagccg gagcgaggag
     4081 cggccatact gtgagatctg tgagatgttt gggcactggg caaccaactg caatgacgac
     4141 gagaccttct gaggaagccg ggagggcagg aagggcttcc ccgacaaacg ccggctcctc
     4201 agcagctccc gccagcattg gtgtgcaact tcagaagagc tccttatttt ttgacccctg
     4261 tcaacaaatc tgagaaaata ttttgatctt caacaagttt ccctttcatt tcccctcgta
     4321 agttaaaata ataataaata tttggtaggt gggcttgcac ttccgtcctt gttttctgga
     4381 tttttaaggt ttaagacatt gtaccaggca cagttcctgt ttgttcctag agaaaccctc
     4441 tgggacaagt gggaccctgg cagtatctta tttaggaaac ttcaaatgat gccgttgact
     4501 ctcatgtttg cactaaaatg tttcctggct acatctgtat atttaggttg ttgttgttgt
     4561 tgttatgctt tgacactgga atgagttgca aaaaaaccct gtgccacttt gtgatttcct
     4621 gcctcattta aatactctca tctctaaacc ccaagctctt ctcttcgcac tccctgctct
     4681 caggagggcc tttttccagg cttgacaata cttaggtgtg actataaatc atgaaaacag
     4741 gtaaaaggga ggggaaagcc cgaactgctg tggggacatt ttctaatcta tatgctgcac
     4801 ccatggaccg acagtggtgt tttctttact ggttttacat aatttcaacg tctatatatt
     4861 atatgtgtat atatttttaa aagaatctat attttgggaa aaagtctata caatgtgtct
     4921 tcttttcaga tttttttacc tttatgaaaa agaaaacatc taaaggctca ccagcatgtg
     4981 actgactggg cccaagatgg gctctgcggt ggtctctgct gtgaggttcc agctatcgtc
     5041 tttgtctcca tgatgtttct tagccagatc ggagtagctg gaagaacagt ctccggctcc
     5101 ttgcttgtgt ttcccttcct tagcagataa ccccagcagc aaactaagcc actcttcaga
     5161 gagctaagct aactgatcta caaccctcct ttatacattt gtggggtgtg tttgtttgtt
     5221 tgttttttac tgtattttta aatgaatgta tgatgagaaa ttcaacatga ataattttgg
     5281 attttcttat cacaaaaaag ataaaacaaa ggacctcaac caactgaaga gttgaccccg
     5341 ccagtctgcg tctctctgtc ttcacttgaa tgtctttgag aatatgtaaa aaggagccac
     5401 atgcacctcc acgcagtgtg caggacgaga acttccgtca ttgtatatag gcctctgccc
     5461 cgtctcccct taaggttatc cactgtgctt gatgagtgag cagtcaatac atctgctgcc
     5521 cgtcggcatt ctgggttaat aaaactatag gaattatttc acaaacaaac tatggaaagc
     5581 agtattaaaa tctgagttct gtatctactt taataaatgt tttgggtctc tttg
//
