LOCUS       XM_036165349            5883 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus CAP-GLY domain containing linker protein 1
            (Clip1), transcript variant X37, mRNA.
ACCESSION   XM_036165349
VERSION     XM_036165349.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Mar 8, 2024 this sequence was replaced by
            NM_001428326.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5883
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..5883
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 51 ESTs, 1238 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 15 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
     CDS             421..4401
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X30"
                     /protein_id="XP_036021242.1"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPVEKTIPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQAAPGRTASPLSTAAATMVSSSP
                     ATPSNIPHKPSQSTAKEPSATPQISNLTKTASESISNLSEAGSVKKGERELKVGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMAATPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEQKSPISEDPENVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDM
                     SLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKEN
                     ESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELK
                     TQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLD
                     SAEDQHLVEMEDTLNKLQEAEIKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKE
                     LQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFK
                     EKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKA
                     NENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLK
                     AKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA
                     AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKE
                     LLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLE
                     EERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTV
                     LRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDE
                     RAQESQIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKK
                     PRLFCDICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRSEERPYCEICEMFGHWATNC
                     NDDETF"
ORIGIN      
        1 agctacactt acataaccat gacttggggg caggacttga gtggactgcc ctggaccagg
       61 gagatggtat taagcagagc ctgacttttc ctgtcaagcg cgtcttgaga gtcatcacta
      121 ggactctctc cagccaggct cactcgggca ctcccagagc ctcgggttgt gtcgtcattt
      181 aggacagtct tcagactgca gctgtctcca ggtaaggggc cgagagccct gtagctgctg
      241 ctgttgctca ggatgagatt ccagcctcta caccagcctg cttcctgaat tttaaattcc
      301 ctttcctggc agatttgacc gagaggctga gttctctata ggaacaccca catttgtatg
      361 gatgagtggg gaaagatagc ggcagcagac aaggaaaaag cgtcctgacc tcccgagaac
      421 atgagtatgc taaaacccag cggcctgaag gcccctacca agatccttaa gccgggaagc
      481 acagccttga agacgcctgc tgctgctgca gctccagtgg agaagacaat acccagtgag
      541 aaagcctcgg gccctccatc ctccgagacc caagaggagt ttgtggatga ctttcgagtt
      601 ggagaacgtg tttgggtgaa cgggaataag cccggattta tccagtttct tggggaaact
      661 cagttcgcac caggccagtg ggctgggatt gttttagatg aacccatagg gaagaacgat
      721 ggctctgtgg cgggagtgcg gtatttccag tgtgaacctt taaagggcat attcacccga
      781 ccttcaaagc taacgaggaa ggtgcaggca gaagatgaag ccaacggcct gcaggcagct
      841 cctgggagaa ctgcttcacc tctgtccact gctgcagcta ccatggtgtc ttcttctcca
      901 gccactccct caaatattcc ccacaaaccg tcccagtcaa cggcaaaaga accttcggct
      961 acacctcaaa ttagcaacct cacaaaaact gccagtgagt cgatctccaa cctttcagag
     1021 gctggctctg tcaagaaggg ggagcgggag ctcaaggtcg gagacagggt gctggttggt
     1081 ggcactaagg ctggcgtagt ccgctttctt ggcgagaccg actttgccaa gggggagtgg
     1141 tgtggtgtgg agttagacga gcctttgggg aagaacgatg gtgctgtggc cggaacaagg
     1201 tattttcagt gtcaacccaa atatggattg ttcgctcctg tccacaaagt gacaaagatt
     1261 ggcttcccgt ctactacccc agccaaagcc aaagccgccg ctgtgaggcg agtgatggcc
     1321 gccacgcccg ccagcctgaa gcgaagccct tctgcctcct ccctcagctc catgagctcc
     1381 gtggcctcct ctgtgagcag caaacccagc cggacaggac tattgactga aacctcctcc
     1441 cgctacgccc gcaagatctc gggcaccact gccctccagg aggcgctgaa ggagaagcag
     1501 cagcacattg agcagctgct ggctgagcgg gacctggagc gggccgaggt ggccaaggct
     1561 accagccacg tgggggaaat agagcaggag ctagccctgg cccgagatgg gcatgaccag
     1621 catgtcctgg aactagaggc caagatggac cagctacgga ccatggtgga agctgctgac
     1681 agggagaaag tggagctgct caaccagctg gaagaggaga agaggaaggt tgaggacctt
     1741 cagttccgag ttgaagaaga atcaattacc aaaggcgatc ttgagcaaaa gagcccgatt
     1801 tctgaagatc ccgagaatgt ggctaccgtc tcagaaaagt cccgaataat ggaactagaa
     1861 aaggacctag cattgagagc acaggaagta gctgagctcc gaagaaggct agagtccagt
     1921 aaacctcctg gggatgtgga tatgtctctc tcccttttgc aagaaataag tgctttgcaa
     1981 gaaaagctag aagccatcca tactgaccac cagggcgaga tgacttcttt gaaggaacac
     2041 ttcggagctc gagaggaggc gtttcagaag gagatcaagg ctctgcacac ggccactgag
     2101 aagctttcca aagagaacga gtccctgaga agcaagctcg accacgctaa taaggagaac
     2161 tccgatgtga tagctctatg gaagtccaaa ctggagaccg ccatagcatc ccaccagcag
     2221 gcaatggagg agctgaaggt gtcctttagc aaaggcattg gaacggactc cgctgaattt
     2281 gctgagttaa agacacagat agagagactg agactagatt accagcacga aatagaaagt
     2341 ttacagagta aacaggactc tgagcggtct gctcatgcta aagagatgga gaccatgcag
     2401 gccaagctga tgaagatcat taaagagaag gaggacagcc tggaggccgt caaagcgaga
     2461 ctggacagtg cagaagacca gcacctagtg gaaatggagg acacgctaaa caaactgcag
     2521 gaggcggaga ttaaggctaa tagcattacc aaagagctcc aggagaaaga gctagtgctc
     2581 actggtctgc aggacagttt gaatcaagtc aatcaagtga aggagacttt ggagaaagaa
     2641 cttcagactt tgaaagaaaa gtttgccagt acttcagagg aggcggtctc tgctcagaca
     2701 aggatgcaag ataccgtaaa taaactgcac caaaaggagg aacagtttaa cgtgttgtcg
     2761 tctgaactgg agaagttgag agaaaattta acagacatgg aggcaaaatt taaagagaag
     2821 gatgatcgag aagatcagct ggtaaaggca aaggaaaaat tagaaaacga cattgcagaa
     2881 ataatgaaga tgtcaggaga taactcttct cagctgacaa agatgaatga tgaattacgt
     2941 ctgaaggaaa gatccgtgga agaactccag ctcaagctta caaaggccaa tgaaaacgcc
     3001 agttttctgc agaagagtat tggcgaagtg actcttaaag ctgagcagag tcagcagcaa
     3061 gcagccagaa aacatgaaga agaaaagaaa gagttggagg aaaaactgtt ggaactggaa
     3121 aagaagatgg aaacaagcta caaccagtgt caggacctga aagctaagta tgaaaaagcc
     3181 agttctgaga ctaaaacaaa gcatgaagaa atcctgcaga acctccagaa gatgctggcg
     3241 gacacagagg ataagctgaa ggctgctcag gaggcgaaca gagatctgat gcaggacatg
     3301 gaggagctga aaacacaggc cgacaaagcc aaagctgctc agactgcaga agacgccatg
     3361 cagatcatgg aacagatgac caaagagaaa acagaaacgc tggcctcctt ggaggacacc
     3421 aagcaaacaa atgcaagact acagaatgaa ttggacacac ttaaggaaaa caacttgaaa
     3481 actgtggaag agctgaacaa gtcaaaagaa ctgctgagtg tagagaacca aaaaatggaa
     3541 gaattcaaga aagaaataga aaccctaaag caggcagcag ctcagaagtc ccagcagctt
     3601 tcagcactgc aggaagagaa cgtcaaactt gccgaggagc tggggagaac ccgggacgaa
     3661 gtcacaagtc accagaagct ggaagaagaa cgatctgtac tcaataatca gttgttagaa
     3721 atgaaaaaga gagaatctga gttcagaaaa gacgccgatg aagagaaagc ctccttgcag
     3781 aagtcgatca gcctcaccag tgccttgctc acagagaagg acgcggagct ggagaagctg
     3841 aggaatgagg tcacagtgct caggggagag aatgccaccg ccaagtccct gcactcagtt
     3901 gtgcagacac tggagtctga taaggtgaag cttgagctca aggtcaaaaa cttggaactt
     3961 caactcaagg agaacaagag gcagctcagc agctcctcag gtaacactga tgctcaggcg
     4021 gaagaggatg agagagccca ggagagtcag attgatttcc tcaactcggt aatagtggat
     4081 cttcaaagaa agaaccaaga cctcaagatg aaggtggaga tgatgtctga agctgcactc
     4141 aatggcaacg gggaagacct gaacagttat gacagtgatg accaggaaaa gcagtccaag
     4201 aagaaacccc gcctcttctg tgacatctgt gactgctttg acctccacga tacagaggac
     4261 tgtcccaccc aggcacagat gtcggaagat cctccccatt ccactcacca tggcagccgg
     4321 agcgaggagc ggccatactg tgagatctgt gagatgtttg ggcactgggc aaccaactgc
     4381 aatgacgacg agaccttctg aggaagccgg gagggcagga agggcttccc cgacaaacgc
     4441 cggctcctca gcagctcccg ccagcattgg tgtgcaactt cagaagagct ccttattttt
     4501 tgacccctgt caacaaatct gagaaaatat tttgatcttc aacaagtttc cctttcattt
     4561 cccctcgtaa gttaaaataa taataaatat ttggtaggtg ggcttgcact tccgtccttg
     4621 ttttctggat ttttaaggtt taagacattg taccaggcac agttcctgtt tgttcctaga
     4681 gaaaccctct gggacaagtg ggaccctggc agtatcttat ttaggaaact tcaaatgatg
     4741 ccgttgactc tcatgtttgc actaaaatgt ttcctggcta catctgtata tttaggttgt
     4801 tgttgttgtt gttatgcttt gacactggaa tgagttgcaa aaaaaccctg tgccactttg
     4861 tgatttcctg cctcatttaa atactctcat ctctaaaccc caagctcttc tcttcgcact
     4921 ccctgctctc aggagggcct ttttccaggc ttgacaatac ttaggtgtga ctataaatca
     4981 tgaaaacagg taaaagggag gggaaagccc gaactgctgt ggggacattt tctaatctat
     5041 atgctgcacc catggaccga cagtggtgtt ttctttactg gttttacata atttcaacgt
     5101 ctatatatta tatgtgtata tatttttaaa agaatctata ttttgggaaa aagtctatac
     5161 aatgtgtctt cttttcagat ttttttacct ttatgaaaaa gaaaacatct aaaggctcac
     5221 cagcatgtga ctgactgggc ccaagatggg ctctgcggtg gtctctgctg tgaggttcca
     5281 gctatcgtct ttgtctccat gatgtttctt agccagatcg gagtagctgg aagaacagtc
     5341 tccggctcct tgcttgtgtt tcccttcctt agcagataac cccagcagca aactaagcca
     5401 ctcttcagag agctaagcta actgatctac aaccctcctt tatacatttg tggggtgtgt
     5461 ttgtttgttt gttttttact gtatttttaa atgaatgtat gatgagaaat tcaacatgaa
     5521 taattttgga ttttcttatc acaaaaaaga taaaacaaag gacctcaacc aactgaagag
     5581 ttgaccccgc cagtctgcgt ctctctgtct tcacttgaat gtctttgaga atatgtaaaa
     5641 aggagccaca tgcacctcca cgcagtgtgc aggacgagaa cttccgtcat tgtatatagg
     5701 cctctgcccc gtctcccctt aaggttatcc actgtgcttg atgagtgagc agtcaataca
     5761 tctgctgccc gtcggcattc tgggttaata aaactatagg aattatttca caaacaaact
     5821 atggaaagca gtattaaaat ctgagttctg tatctacttt aataaatgtt ttgggtctct
     5881 ttg
//
