LOCUS       XM_036165343            5984 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus CAP-GLY domain containing linker protein 1
            (Clip1), transcript variant X31, mRNA.
ACCESSION   XM_036165343
VERSION     XM_036165343.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Mar 8, 2024 this sequence was replaced by
            NM_001428322.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5984
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..5984
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 51 ESTs, 1227 long SRA reads, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 15 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
     CDS             417..4502
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X25"
                     /protein_id="XP_036021236.1"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPVEKTIPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQAAPGRTASPLSTAAATMVSSSP
                     ATPSNIPHKPSQSTAKEPSATPQISNLTKTASESISNLSEAGSVKKGERELKVGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMAATPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEK
                     SRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQ
                     GEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKS
                     KLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDS
                     ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIK
                     ANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQ
                     DTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEI
                     MKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQ
                     QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQK
                     MLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLA
                     SLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAA
                     AQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKD
                     ADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKV
                     KLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVDLQRKNQD
                     LKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKKPRLFCDICDCFDLHDTEDCPTQA
                     QMSEDPPHSTHHGSRSEERPYCEICEMFGHWATNCNDDETF"
ORIGIN      
        1 acacttacat aaccatgact tgggggcagg acttgagtgg actgccctgg accagggaga
       61 tggtattaag cagagcctga cttttcctgt caagcgcgtc ttgagagtca tcactaggac
      121 tctctccagc caggctcact cgggcactcc cagagcctcg ggttgtgtcg tcatttagga
      181 cagtcttcag actgcagctg tctccaggta aggggccgag agccctgtag ctgctgctgt
      241 tgctcaggat gagattccag cctctacacc agcctgcttc ctgaatttta aattcccttt
      301 cctggcagat ttgaccgaga ggctgagttc tctataggaa cacccacatt tgtatggatg
      361 agtggggaaa gatagcggca gcagacaagg aaaaagcgtc ctgacctccc gagaacatga
      421 gtatgctaaa acccagcggc ctgaaggccc ctaccaagat ccttaagccg ggaagcacag
      481 ccttgaagac gcctgctgct gctgcagctc cagtggagaa gacaataccc agtgagaaag
      541 cctcgggccc tccatcctcc gagacccaag aggagtttgt ggatgacttt cgagttggag
      601 aacgtgtttg ggtgaacggg aataagcccg gatttatcca gtttcttggg gaaactcagt
      661 tcgcaccagg ccagtgggct gggattgttt tagatgaacc catagggaag aacgatggct
      721 ctgtggcggg agtgcggtat ttccagtgtg aacctttaaa gggcatattc acccgacctt
      781 caaagctaac gaggaaggtg caggcagaag atgaagccaa cggcctgcag gcagctcctg
      841 ggagaactgc ttcacctctg tccactgctg cagctaccat ggtgtcttct tctccagcca
      901 ctccctcaaa tattccccac aaaccgtccc agtcaacggc aaaagaacct tcggctacac
      961 ctcaaattag caacctcaca aaaactgcca gtgagtcgat ctccaacctt tcagaggctg
     1021 gctctgtcaa gaagggggag cgggagctca aggtcggaga cagggtgctg gttggtggca
     1081 ctaaggctgg cgtagtccgc tttcttggcg agaccgactt tgccaagggg gagtggtgtg
     1141 gtgtggagtt agacgagcct ttggggaaga acgatggtgc tgtggccgga acaaggtatt
     1201 ttcagtgtca acccaaatat ggattgttcg ctcctgtcca caaagtgaca aagattggct
     1261 tcccgtctac taccccagcc aaagccaaag ccgccgctgt gaggcgagtg atggccgcca
     1321 cgcccgccag cctgaagcga agcccttctg cctcctccct cagctccatg agctccgtgg
     1381 cctcctctgt gagcagcaaa cccagccgga caggactatt gactgaaacc tcctcccgct
     1441 acgcccgcaa gatctcgggc accactgccc tccaggaggc gctgaaggag aagcagcagc
     1501 acattgagca gctgctggct gagcgggacc tggagcgggc cgaggtggcc aaggctacca
     1561 gccacgtggg ggaaatagag caggagctag ccctggcccg agatgggcat gaccagcatg
     1621 tcctggaact agaggccaag atggaccagc tacggaccat ggtggaagct gctgacaggg
     1681 agaaagtgga gctgctcaac cagctggaag aggagaagag gaaggttgag gaccttcagt
     1741 tccgagttga agaagaatca attaccaaag gcgatcttga gcaaaagagc ccgatttctg
     1801 aagatcccga gaatacgcag accaaactgg agcatgcccg cactaaggag cttgaacaga
     1861 gcctgctctt tgaaaagacc aaagctgaca aactccagag ggagttagaa gacactaggg
     1921 tggctaccgt ctcagaaaag tcccgaataa tggaactaga aaaggaccta gcattgagag
     1981 cacaggaagt agctgagctc cgaagaaggc tagagtccag taaacctcct ggggatgtgg
     2041 atatgtctct ctcccttttg caagaaataa gtgctttgca agaaaagcta gaagccatcc
     2101 atactgacca ccagggcgag atgacttctt tgaaggaaca cttcggagct cgagaggagg
     2161 cgtttcagaa ggagatcaag gctctgcaca cggccactga gaagctttcc aaagagaacg
     2221 agtccctgag aagcaagctc gaccacgcta ataaggagaa ctccgatgtg atagctctat
     2281 ggaagtccaa actggagacc gccatagcat cccaccagca ggcaatggag gagctgaagg
     2341 tgtcctttag caaaggcatt ggaacggact ccgctgaatt tgctgagtta aagacacaga
     2401 tagagagact gagactagat taccagcacg aaatagaaag tttacagagt aaacaggact
     2461 ctgagcggtc tgctcatgct aaagagatgg agaccatgca ggccaagctg atgaagatca
     2521 ttaaagagaa ggaggacagc ctggaggccg tcaaagcgag actggacagt gcagaagacc
     2581 agcacctagt ggaaatggag gacacgctaa acaaactgca ggaggcggag attaaggcta
     2641 atagcattac caaagagctc caggagaaag agctagtgct cactggtctg caggacagtt
     2701 tgaatcaagt caatcaagtg aaggagactt tggagaaaga acttcagact ttgaaagaaa
     2761 agtttgccag tacttcagag gaggcggtct ctgctcagac aaggatgcaa gataccgtaa
     2821 ataaactgca ccaaaaggag gaacagttta acgtgttgtc gtctgaactg gagaagttga
     2881 gagaaaattt aacagacatg gaggcaaaat ttaaagagaa ggatgatcga gaagatcagc
     2941 tggtaaaggc aaaggaaaaa ttagaaaacg acattgcaga aataatgaag atgtcaggag
     3001 ataactcttc tcagctgaca aagatgaatg atgaattacg tctgaaggaa agatccgtgg
     3061 aagaactcca gctcaagctt acaaaggcca atgaaaacgc cagttttctg cagaagagta
     3121 ttggcgaagt gactcttaaa gctgagcaga gtcagcagca agcagccaga aaacatgaag
     3181 aagaaaagaa agagttggag gaaaaactgt tggaactgga aaagaagatg gaaacaagct
     3241 acaaccagtg tcaggacctg aaagctaagt atgaaaaagc cagttctgag actaaaacaa
     3301 agcatgaaga aatcctgcag aacctccaga agatgctggc ggacacagag gataagctga
     3361 aggctgctca ggaggcgaac agagatctga tgcaggacat ggaggagctg aaaacacagg
     3421 ccgacaaagc caaagctgct cagactgcag aagacgccat gcagatcatg gaacagatga
     3481 ccaaagagaa aacagaaacg ctggcctcct tggaggacac caagcaaaca aatgcaagac
     3541 tacagaatga attggacaca cttaaggaaa acaacttgaa aactgtggaa gagctgaaca
     3601 agtcaaaaga actgctgagt gtagagaacc aaaaaatgga agaattcaag aaagaaatag
     3661 aaaccctaaa gcaggcagca gctcagaagt cccagcagct ttcagcactg caggaagaga
     3721 acgtcaaact tgccgaggag ctggggagaa cccgggacga agtcacaagt caccagaagc
     3781 tggaagaaga acgatctgta ctcaataatc agttgttaga aatgaaaaag agagaatctg
     3841 agttcagaaa agacgccgat gaagagaaag cctccttgca gaagtcgatc agcctcacca
     3901 gtgccttgct cacagagaag gacgcggagc tggagaagct gaggaatgag gtcacagtgc
     3961 tcaggggaga gaatgccacc gccaagtccc tgcactcagt tgtgcagaca ctggagtctg
     4021 ataaggtgaa gcttgagctc aaggtcaaaa acttggaact tcaactcaag gagaacaaga
     4081 ggcagctcag cagctcctca ggtaacactg atgctcaggc ggaagaggat gagagagccc
     4141 aggagagtca gattgatttc ctcaactcgg taatagtgga tcttcaaaga aagaaccaag
     4201 acctcaagat gaaggtggag atgatgtctg aagctgcact caatggcaac ggggaagacc
     4261 tgaacagtta tgacagtgat gaccaggaaa agcagtccaa gaagaaaccc cgcctcttct
     4321 gtgacatctg tgactgcttt gacctccacg atacagagga ctgtcccacc caggcacaga
     4381 tgtcggaaga tcctccccat tccactcacc atggcagccg gagcgaggag cggccatact
     4441 gtgagatctg tgagatgttt gggcactggg caaccaactg caatgacgac gagaccttct
     4501 gaggaagccg ggagggcagg aagggcttcc ccgacaaacg ccggctcctc agcagctccc
     4561 gccagcattg gtgtgcaact tcagaagagc tccttatttt ttgacccctg tcaacaaatc
     4621 tgagaaaata ttttgatctt caacaagttt ccctttcatt tcccctcgta agttaaaata
     4681 ataataaata tttggtaggt gggcttgcac ttccgtcctt gttttctgga tttttaaggt
     4741 ttaagacatt gtaccaggca cagttcctgt ttgttcctag agaaaccctc tgggacaagt
     4801 gggaccctgg cagtatctta tttaggaaac ttcaaatgat gccgttgact ctcatgtttg
     4861 cactaaaatg tttcctggct acatctgtat atttaggttg ttgttgttgt tgttatgctt
     4921 tgacactgga atgagttgca aaaaaaccct gtgccacttt gtgatttcct gcctcattta
     4981 aatactctca tctctaaacc ccaagctctt ctcttcgcac tccctgctct caggagggcc
     5041 tttttccagg cttgacaata cttaggtgtg actataaatc atgaaaacag gtaaaaggga
     5101 ggggaaagcc cgaactgctg tggggacatt ttctaatcta tatgctgcac ccatggaccg
     5161 acagtggtgt tttctttact ggttttacat aatttcaacg tctatatatt atatgtgtat
     5221 atatttttaa aagaatctat attttgggaa aaagtctata caatgtgtct tcttttcaga
     5281 tttttttacc tttatgaaaa agaaaacatc taaaggctca ccagcatgtg actgactggg
     5341 cccaagatgg gctctgcggt ggtctctgct gtgaggttcc agctatcgtc tttgtctcca
     5401 tgatgtttct tagccagatc ggagtagctg gaagaacagt ctccggctcc ttgcttgtgt
     5461 ttcccttcct tagcagataa ccccagcagc aaactaagcc actcttcaga gagctaagct
     5521 aactgatcta caaccctcct ttatacattt gtggggtgtg tttgtttgtt tgttttttac
     5581 tgtattttta aatgaatgta tgatgagaaa ttcaacatga ataattttgg attttcttat
     5641 cacaaaaaag ataaaacaaa ggacctcaac caactgaaga gttgaccccg ccagtctgcg
     5701 tctctctgtc ttcacttgaa tgtctttgag aatatgtaaa aaggagccac atgcacctcc
     5761 acgcagtgtg caggacgaga acttccgtca ttgtatatag gcctctgccc cgtctcccct
     5821 taaggttatc cactgtgctt gatgagtgag cagtcaatac atctgctgcc cgtcggcatt
     5881 ctgggttaat aaaactatag gaattatttc acaaacaaac tatggaaagc agtattaaaa
     5941 tctgagttct gtatctactt taataaatgt tttgggtctc tttg
//
