LOCUS       XM_036165339            6012 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus CAP-GLY domain containing linker protein 1
            (Clip1), transcript variant X26, mRNA.
ACCESSION   XM_036165339
VERSION     XM_036165339.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Mar 8, 2024 this sequence was replaced by
            NM_001428318.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6012
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..6012
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 53 ESTs, 1366 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 28 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
     CDS             322..4530
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X22"
                     /protein_id="XP_036021232.1"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPVEKTIPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQAAPGRTASPLSTAAATMVSSSP
                     ATPSNIPHKPSQSTAKEPSATPQISNLTKTASESISNLSEAGSVKKGERELKVGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMAATPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEQKSPISEDPENVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDM
                     SLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKEN
                     ESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELK
                     TQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLD
                     SAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDL
                     DALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTG
                     LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLS
                     SELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDE
                     LRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKL
                     LELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANR
                     DLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELD
                     TLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKL
                     AEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSA
                     LLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENK
                     RQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNG
                     EDLNSYDSDDQEKQSKKKPRLFCDICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRSE
                     ERPYCEICEMFGHWATNCNDDETF"
ORIGIN      
        1 aggggcggca ggggagctcg cgggcggcag cggcccgggc acggggaggg gcggcgcggc
       61 gtcttctccc ggccccgcgg cggcggcggc agcgcgtcac gttctcttcc ccgccccgag
      121 ccgaagagcc ggggaggcgg gaggcggcgg ccgcggcggc tgctgctgct gctgctggga
      181 ggcaggtgac ggcgaccagc ggcgtcccag gcgatttgac cgagaggctg agttctctat
      241 aggaacaccc acatttgtat ggatgagtgg ggaaagatag cggcagcaga caaggaaaaa
      301 gcgtcctgac ctcccgagaa catgagtatg ctaaaaccca gcggcctgaa ggcccctacc
      361 aagatcctta agccgggaag cacagccttg aagacgcctg ctgctgctgc agctccagtg
      421 gagaagacaa tacccagtga gaaagcctcg ggccctccat cctccgagac ccaagaggag
      481 tttgtggatg actttcgagt tggagaacgt gtttgggtga acgggaataa gcccggattt
      541 atccagtttc ttggggaaac tcagttcgca ccaggccagt gggctgggat tgttttagat
      601 gaacccatag ggaagaacga tggctctgtg gcgggagtgc ggtatttcca gtgtgaacct
      661 ttaaagggca tattcacccg accttcaaag ctaacgagga aggtgcaggc agaagatgaa
      721 gccaacggcc tgcaggcagc tcctgggaga actgcttcac ctctgtccac tgctgcagct
      781 accatggtgt cttcttctcc agccactccc tcaaatattc cccacaaacc gtcccagtca
      841 acggcaaaag aaccttcggc tacacctcaa attagcaacc tcacaaaaac tgccagtgag
      901 tcgatctcca acctttcaga ggctggctct gtcaagaagg gggagcggga gctcaaggtc
      961 ggagacaggg tgctggttgg tggcactaag gctggcgtag tccgctttct tggcgagacc
     1021 gactttgcca agggggagtg gtgtggtgtg gagttagacg agcctttggg gaagaacgat
     1081 ggtgctgtgg ccggaacaag gtattttcag tgtcaaccca aatatggatt gttcgctcct
     1141 gtccacaaag tgacaaagat tggcttcccg tctactaccc cagccaaagc caaagccgcc
     1201 gctgtgaggc gagtgatggc cgccacgccc gccagcctga agcgaagccc ttctgcctcc
     1261 tccctcagct ccatgagctc cgtggcctcc tctgtgagca gcaaacccag ccggacagga
     1321 ctattgactg aaacctcctc ccgctacgcc cgcaagatct cgggcaccac tgccctccag
     1381 gaggcgctga aggagaagca gcagcacatt gagcagctgc tggctgagcg ggacctggag
     1441 cgggccgagg tggccaaggc taccagccac gtgggggaaa tagagcagga gctagccctg
     1501 gcccgagatg ggcatgacca gcatgtcctg gaactagagg ccaagatgga ccagctacgg
     1561 accatggtgg aagctgctga cagggagaaa gtggagctgc tcaaccagct ggaagaggag
     1621 aagaggaagg ttgaggacct tcagttccga gttgaagaag aatcaattac caaaggcgat
     1681 cttgagcaaa agagcccgat ttctgaagat cccgagaatg tggctaccgt ctcagaaaag
     1741 tcccgaataa tggaactaga aaaggaccta gcattgagag cacaggaagt agctgagctc
     1801 cgaagaaggc tagagtccag taaacctcct ggggatgtgg atatgtctct ctcccttttg
     1861 caagaaataa gtgctttgca agaaaagcta gaagccatcc atactgacca ccagggcgag
     1921 atgacttctt tgaaggaaca cttcggagct cgagaggagg cgtttcagaa ggagatcaag
     1981 gctctgcaca cggccactga gaagctttcc aaagagaacg agtccctgag aagcaagctc
     2041 gaccacgcta ataaggagaa ctccgatgtg atagctctat ggaagtccaa actggagacc
     2101 gccatagcat cccaccagca ggcaatggag gagctgaagg tgtcctttag caaaggcatt
     2161 ggaacggact ccgctgaatt tgctgagtta aagacacaga tagagagact gagactagat
     2221 taccagcacg aaatagaaag tttacagagt aaacaggact ctgagcggtc tgctcatgct
     2281 aaagagatgg agaccatgca ggccaagctg atgaagatca ttaaagagaa ggaggacagc
     2341 ctggaggccg tcaaagcgag actggacagt gcagaagacc agcacctagt ggaaatggag
     2401 gacacgctaa acaaactgca ggaggcggag attaaggtaa aggagctaga ggttctgcag
     2461 gccaagtaca ctgaacaaag cgaggtcatt ggtaatttta catcgcagct cagtgctgtc
     2521 aaagaaaagc tcttggatct tgatgcgctt cggaaagcca attccgaagg taaactggag
     2581 ctcgagacac ttagacagca gcttgaggga gctgaaaagc agattaaaaa cttagagact
     2641 gaaaggaacg ctgaaagtag caaggctaat agcattacca aagagctcca ggagaaagag
     2701 ctagtgctca ctggtctgca ggacagtttg aatcaagtca atcaagtgaa ggagactttg
     2761 gagaaagaac ttcagacttt gaaagaaaag tttgccagta cttcagagga ggcggtctct
     2821 gctcagacaa ggatgcaaga taccgtaaat aaactgcacc aaaaggagga acagtttaac
     2881 gtgttgtcgt ctgaactgga gaagttgaga gaaaatttaa cagacatgga ggcaaaattt
     2941 aaagagaagg atgatcgaga agatcagctg gtaaaggcaa aggaaaaatt agaaaacgac
     3001 attgcagaaa taatgaagat gtcaggagat aactcttctc agctgacaaa gatgaatgat
     3061 gaattacgtc tgaaggaaag atccgtggaa gaactccagc tcaagcttac aaaggccaat
     3121 gaaaacgcca gttttctgca gaagagtatt ggcgaagtga ctcttaaagc tgagcagagt
     3181 cagcagcaag cagccagaaa acatgaagaa gaaaagaaag agttggagga aaaactgttg
     3241 gaactggaaa agaagatgga aacaagctac aaccagtgtc aggacctgaa agctaagtat
     3301 gaaaaagcca gttctgagac taaaacaaag catgaagaaa tcctgcagaa cctccagaag
     3361 atgctggcgg acacagagga taagctgaag gctgctcagg aggcgaacag agatctgatg
     3421 caggacatgg aggagctgaa aacacaggcc gacaaagcca aagctgctca gactgcagaa
     3481 gacgccatgc agatcatgga acagatgacc aaagagaaaa cagaaacgct ggcctccttg
     3541 gaggacacca agcaaacaaa tgcaagacta cagaatgaat tggacacact taaggaaaac
     3601 aacttgaaaa ctgtggaaga gctgaacaag tcaaaagaac tgctgagtgt agagaaccaa
     3661 aaaatggaag aattcaagaa agaaatagaa accctaaagc aggcagcagc tcagaagtcc
     3721 cagcagcttt cagcactgca ggaagagaac gtcaaacttg ccgaggagct ggggagaacc
     3781 cgggacgaag tcacaagtca ccagaagctg gaagaagaac gatctgtact caataatcag
     3841 ttgttagaaa tgaaaaagag agaatctgag ttcagaaaag acgccgatga agagaaagcc
     3901 tccttgcaga agtcgatcag cctcaccagt gccttgctca cagagaagga cgcggagctg
     3961 gagaagctga ggaatgaggt cacagtgctc aggggagaga atgccaccgc caagtccctg
     4021 cactcagttg tgcagacact ggagtctgat aaggtgaagc ttgagctcaa ggtcaaaaac
     4081 ttggaacttc aactcaagga gaacaagagg cagctcagca gctcctcagg taacactgat
     4141 gctcaggcgg aagaggatga gagagcccag gagagtcaga ttgatttcct caactcggta
     4201 atagtggatc ttcaaagaaa gaaccaagac ctcaagatga aggtggagat gatgtctgaa
     4261 gctgcactca atggcaacgg ggaagacctg aacagttatg acagtgatga ccaggaaaag
     4321 cagtccaaga agaaaccccg cctcttctgt gacatctgtg actgctttga cctccacgat
     4381 acagaggact gtcccaccca ggcacagatg tcggaagatc ctccccattc cactcaccat
     4441 ggcagccgga gcgaggagcg gccatactgt gagatctgtg agatgtttgg gcactgggca
     4501 accaactgca atgacgacga gaccttctga ggaagccggg agggcaggaa gggcttcccc
     4561 gacaaacgcc ggctcctcag cagctcccgc cagcattggt gtgcaacttc agaagagctc
     4621 cttatttttt gacccctgtc aacaaatctg agaaaatatt ttgatcttca acaagtttcc
     4681 ctttcatttc ccctcgtaag ttaaaataat aataaatatt tggtaggtgg gcttgcactt
     4741 ccgtccttgt tttctggatt tttaaggttt aagacattgt accaggcaca gttcctgttt
     4801 gttcctagag aaaccctctg ggacaagtgg gaccctggca gtatcttatt taggaaactt
     4861 caaatgatgc cgttgactct catgtttgca ctaaaatgtt tcctggctac atctgtatat
     4921 ttaggttgtt gttgttgttg ttatgctttg acactggaat gagttgcaaa aaaaccctgt
     4981 gccactttgt gatttcctgc ctcatttaaa tactctcatc tctaaacccc aagctcttct
     5041 cttcgcactc cctgctctca ggagggcctt tttccaggct tgacaatact taggtgtgac
     5101 tataaatcat gaaaacaggt aaaagggagg ggaaagcccg aactgctgtg gggacatttt
     5161 ctaatctata tgctgcaccc atggaccgac agtggtgttt tctttactgg ttttacataa
     5221 tttcaacgtc tatatattat atgtgtatat atttttaaaa gaatctatat tttgggaaaa
     5281 agtctataca atgtgtcttc ttttcagatt tttttacctt tatgaaaaag aaaacatcta
     5341 aaggctcacc agcatgtgac tgactgggcc caagatgggc tctgcggtgg tctctgctgt
     5401 gaggttccag ctatcgtctt tgtctccatg atgtttctta gccagatcgg agtagctgga
     5461 agaacagtct ccggctcctt gcttgtgttt cccttcctta gcagataacc ccagcagcaa
     5521 actaagccac tcttcagaga gctaagctaa ctgatctaca accctccttt atacatttgt
     5581 ggggtgtgtt tgtttgtttg ttttttactg tatttttaaa tgaatgtatg atgagaaatt
     5641 caacatgaat aattttggat tttcttatca caaaaaagat aaaacaaagg acctcaacca
     5701 actgaagagt tgaccccgcc agtctgcgtc tctctgtctt cacttgaatg tctttgagaa
     5761 tatgtaaaaa ggagccacat gcacctccac gcagtgtgca ggacgagaac ttccgtcatt
     5821 gtatataggc ctctgccccg tctcccctta aggttatcca ctgtgcttga tgagtgagca
     5881 gtcaatacat ctgctgcccg tcggcattct gggttaataa aactatagga attatttcac
     5941 aaacaaacta tggaaagcag tattaaaatc tgagttctgt atctacttta ataaatgttt
     6001 tgggtctctt tg
//
