LOCUS       XM_030254713            8181 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus CAP-GLY domain containing linker protein 1
            (Clip1), transcript variant X12, mRNA.
ACCESSION   XM_030254713
VERSION     XM_030254713.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030254713.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8181
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..8181
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 49 ESTs, 1172 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
     CDS             322..6699
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X10"
                     /protein_id="XP_030110573.1"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPVEKTIPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQAAPGRTASPLSTAAATMVSSSP
                     ATPSNIPHKPSQSTAKEPSATPQISNLTKTASESISNLSEAGSVKKGERELKVGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMAATPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     HVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQT
                     KLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAE
                     LRRRLESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQK
                     EIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVS
                     FSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKI
                     IKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIG
                     NFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKA
                     NSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQD
                     TVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIM
                     KMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQ
                     AARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKM
                     LADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTSAKKEIEVMSEELRGLKS
                     EKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSEEK
                     QVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIEE
                     LRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKDQ
                     KALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLRQGQEK
                     LSASLEATLQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEIK
                     TCRAITDSECIQLLHEKESLAASERTLLAEKEELLSENRIITEKLSKQSEEVARLEMG
                     LNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDLR
                     RKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKENQELTSSKCDLSLLLKEAQDA
                     KKNLEKEHTSMIQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQTLI
                     LEKEARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQK
                     VEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNHE
                     VALTERAEVLQDNKNLLAEKREMMLRNEEALKEKEKLEESYFILQKEISQLAQTNSHI
                     SANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAMQIMEQMTKEKTETL
                     ASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQA
                     AAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTL
                     RESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVV
                     QTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSV
                     IVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKKPRLFCDICDCFDL
                     HDTEDCPTQAQMSEDPPHSTHHGSRSEERPYCEICEMFGHWATNCNDDETF"
ORIGIN      
        1 aggggcggca ggggagctcg cgggcggcag cggcccgggc acggggaggg gcggcgcggc
       61 gtcttctccc ggccccgcgg cggcggcggc agcgcgtcac gttctcttcc ccgccccgag
      121 ccgaagagcc ggggaggcgg gaggcggcgg ccgcggcggc tgctgctgct gctgctggga
      181 ggcaggtgac ggcgaccagc ggcgtcccag gcgatttgac cgagaggctg agttctctat
      241 aggaacaccc acatttgtat ggatgagtgg ggaaagatag cggcagcaga caaggaaaaa
      301 gcgtcctgac ctcccgagaa catgagtatg ctaaaaccca gcggcctgaa ggcccctacc
      361 aagatcctta agccgggaag cacagccttg aagacgcctg ctgctgctgc agctccagtg
      421 gagaagacaa tacccagtga gaaagcctcg ggccctccat cctccgagac ccaagaggag
      481 tttgtggatg actttcgagt tggagaacgt gtttgggtga acgggaataa gcccggattt
      541 atccagtttc ttggggaaac tcagttcgca ccaggccagt gggctgggat tgttttagat
      601 gaacccatag ggaagaacga tggctctgtg gcgggagtgc ggtatttcca gtgtgaacct
      661 ttaaagggca tattcacccg accttcaaag ctaacgagga aggtgcaggc agaagatgaa
      721 gccaacggcc tgcaggcagc tcctgggaga actgcttcac ctctgtccac tgctgcagct
      781 accatggtgt cttcttctcc agccactccc tcaaatattc cccacaaacc gtcccagtca
      841 acggcaaaag aaccttcggc tacacctcaa attagcaacc tcacaaaaac tgccagtgag
      901 tcgatctcca acctttcaga ggctggctct gtcaagaagg gggagcggga gctcaaggtc
      961 ggagacaggg tgctggttgg tggcactaag gctggcgtag tccgctttct tggcgagacc
     1021 gactttgcca agggggagtg gtgtggtgtg gagttagacg agcctttggg gaagaacgat
     1081 ggtgctgtgg ccggaacaag gtattttcag tgtcaaccca aatatggatt gttcgctcct
     1141 gtccacaaag tgacaaagat tggcttcccg tctactaccc cagccaaagc caaagccgcc
     1201 gctgtgaggc gagtgatggc cgccacgccc gccagcctga agcgaagccc ttctgcctcc
     1261 tccctcagct ccatgagctc cgtggcctcc tctgtgagca gcaaacccag ccggacagga
     1321 ctacatgtcc tggaactaga ggccaagatg gaccagctac ggaccatggt ggaagctgct
     1381 gacagggaga aagtggagct gctcaaccag ctggaagagg agaagaggaa ggttgaggac
     1441 cttcagttcc gagttgaaga agaatcaatt accaaaggcg atcttgagac gcagaccaaa
     1501 ctggagcatg cccgcactaa ggagcttgaa cagagcctgc tctttgaaaa gaccaaagct
     1561 gacaaactcc agagggagtt agaagacact agggtggcta ccgtctcaga aaagtcccga
     1621 ataatggaac tagaaaagga cctagcattg agagcacagg aagtagctga gctccgaaga
     1681 aggctagagt ccagtaaacc tcctggggat gtggatatgt ctctctccct tttgcaagaa
     1741 ataagtgctt tgcaagaaaa gctagaagcc atccatactg accaccaggg cgagatgact
     1801 tctttgaagg aacacttcgg agctcgagag gaggcgtttc agaaggagat caaggctctg
     1861 cacacggcca ctgagaagct ttccaaagag aacgagtccc tgagaagcaa gctcgaccac
     1921 gctaataagg agaactccga tgtgatagct ctatggaagt ccaaactgga gaccgccata
     1981 gcatcccacc agcaggcaat ggaggagctg aaggtgtcct ttagcaaagg cattggaacg
     2041 gactccgctg aatttgctga gttaaagaca cagatagaga gactgagact agattaccag
     2101 cacgaaatag aaagtttaca gagtaaacag gactctgagc ggtctgctca tgctaaagag
     2161 atggagacca tgcaggccaa gctgatgaag atcattaaag agaaggagga cagcctggag
     2221 gccgtcaaag cgagactgga cagtgcagaa gaccagcacc tagtggaaat ggaggacacg
     2281 ctaaacaaac tgcaggaggc ggagattaag gtaaaggagc tagaggttct gcaggccaag
     2341 tacactgaac aaagcgaggt cattggtaat tttacatcgc agctcagtgc tgtcaaagaa
     2401 aagctcttgg atcttgatgc gcttcggaaa gccaattccg aaggtaaact ggagctcgag
     2461 acacttagac agcagcttga gggagctgaa aagcagatta aaaacttaga gactgaaagg
     2521 aacgctgaaa gtagcaaggc taatagcatt accaaagagc tccaggagaa agagctagtg
     2581 ctcactggtc tgcaggacag tttgaatcaa gtcaatcaag tgaaggagac tttggagaaa
     2641 gaacttcaga ctttgaaaga aaagtttgcc agtacttcag aggaggcggt ctctgctcag
     2701 acaaggatgc aagataccgt aaataaactg caccaaaagg aggaacagtt taacgtgttg
     2761 tcgtctgaac tggagaagtt gagagaaaat ttaacagaca tggaggcaaa atttaaagag
     2821 aaggatgatc gagaagatca gctggtaaag gcaaaggaaa aattagaaaa cgacattgca
     2881 gaaataatga agatgtcagg agataactct tctcagctga caaagatgaa tgatgaatta
     2941 cgtctgaagg aaagatccgt ggaagaactc cagctcaagc ttacaaaggc caatgaaaac
     3001 gccagttttc tgcagaagag tattggcgaa gtgactctta aagctgagca gagtcagcag
     3061 caagcagcca gaaaacatga agaagaaaag aaagagttgg aggaaaaact gttggaactg
     3121 gaaaagaaga tggaaacaag ctacaaccag tgtcaggacc tgaaagctaa gtatgaaaaa
     3181 gccagttctg agactaaaac aaagcatgaa gaaatcctgc agaacctcca gaagatgctg
     3241 gcggacacag aggataagct gaaggctgct caggaggcga acagagatct gatgcaggac
     3301 atggaggagc tgaaaacaca ggccgacaaa gccaaatcgc taacttattt gttaacatca
     3361 gccaaaaaag agattgaagt gatgtcagaa gagctgaggg gtctgaaatc agagaagcag
     3421 ctctatgccc aggaggcaaa tgctttaaag ttagagaaag gttctctttt atcaaagctg
     3481 atagaagtgg agaccaagat cactttgctt caggaagacc agcagaaact ctggtcggta
     3541 aacgaaaccc tccacttaga aaaggagaga gtctcggaag agaagcaggt cgccgagaaa
     3601 cgctatcagc aggagcaccg ggacagggag tccctagtgg ccgagagaga gaaactactt
     3661 aaggagatca acgctgccca ggaagaactc ctgaagatgc acatggagaa cgactccctg
     3721 gaagcctcca aggtgagcat gcaggtgctc atcgaggagc tccgcttctg caaggacaag
     3781 ctgatggcca tgtcggagaa ggcgcgcgcc gagaaagagc acctggaggg ccaggtcaag
     3841 aagctcaccg ccgagaactt ggtcctggtc aaagacaagg atgacgtcat ccagaagctg
     3901 cagagcgcct acgaggagct cgtcaaggac cagaaggctc tggtgcaaga gatcgaggac
     3961 ctcacgactg agaagaagtc agctgcggag aagcagatga gcctggacaa cacctgcctc
     4021 accctgaagg ccgagcggga gaaccttctc cagaccaacc gagacctgca gtttgagaag
     4081 gacacgctgc gccagggcca ggagaagctg agcgccagcc tggaggccac cctgcaggtc
     4141 aaacagctgc tcagcacgga ggcggagacc ctgcgcacgc agctggactg tgccagcaaa
     4201 gcgctgagga aggcggagct ggatatgaga cagctccaga cctcgaactc cagcctcacc
     4261 aaactcctgg aagagattaa gacctgccgc gccatcacgg actccgagtg tatccagctc
     4321 ctccacgaga aggagagctt ggcggcctcc gagcggacgc tcctggcaga gaaggaggag
     4381 ctgctcagcg agaatagaat catcaccgag aaactcagca aacaatcaga agaggtggcc
     4441 cggctcgaga tgggcctgaa cgagaagatc acgtacttaa cctccgagaa ggaggtggcc
     4501 tgccagaaag tcgccaagct gaaaaagcag caggatagtc tcctgaagga gaagtcggcc
     4561 ctggagctgc agaacggaga tctgctcgct gacagggaaa gttctatcaa gaccataggg
     4621 gatctgagaa ggaagtatga ccaagaggct acaaacaggc ggattgttat gcaggagaag
     4681 atgaagctgc tcggtaacat cgatgccctc aagaaggagc tgcaggaaag aaagaaggag
     4741 aaccaggagc tgacgagcag caagtgcgac ctctccttgt tgctgaaaga ggctcaggac
     4801 gccaaaaaga atctcgaaaa agagcacact agcatgatac aggcgaagga taacttgaac
     4861 gctgagctga agacctgttg ctgcgagaag aacatgttgc tgagggatgg cctgaacctg
     4921 caggaagagt gtcagaagct aaacgaggag attcgggaaa tccagcagac gttaatcctg
     4981 gagaaggagg ccagggccaa ggagagcgag acctctttgt acgagaacaa caagctccat
     5041 gggagagtag tgctcctgga ggaagagata cagaggctga gggtgtgcag cgagcagctc
     5101 caaactgaga atttcacact tacccaagag aagaccaact cagagcagaa ggtggaggag
     5161 atcattaagg aaaaggagct cctgagtgca gagacggctc agctcgcggc caacatcgag
     5221 accctcaaaa gcgacttcgc tgccctttcc aagtccaagt tggaactgca agaactacac
     5281 agctgcctca ccaagatact ggatgacctg cggctgaacc acgaggtggc cttgacagag
     5341 agggccgagg tgctccagga caacaagaac ctcctggctg agaaacggga gatgatgctg
     5401 agaaacgaag aggcgctgaa ggagaaggag aagctggaag agagctactt catccttcag
     5461 aaagagatta gccagctggc ccagaccaac agccacatct cagccaacct cctagagtcc
     5521 caaagcgaga accggactct gaggaaagac aagagcaagc ttacccttaa aattagagag
     5581 cttgagaccc ttcattcgtt cacggctgct cagactgcag aagacgccat gcagatcatg
     5641 gaacagatga ccaaagagaa aacagaaacg ctggcctcct tggaggacac caagcaaaca
     5701 aatgcaagac tacagaatga attggacaca cttaaggaaa acaacttgaa aactgtggaa
     5761 gagctgaaca agtcaaaaga actgctgagt gtagagaacc aaaaaatgga agaattcaag
     5821 aaagaaatag aaaccctaaa gcaggcagca gctcagaagt cccagcagct ttcagcactg
     5881 caggaagaga acgtcaaact tgccgaggag ctggggagaa cccgggacga agtcacaagt
     5941 caccagaagc tggaagaaga acgatctgta ctcaataatc agttgttaga aatgaaaaag
     6001 agcttgccca gtaacacttt aagagaatct gagttcagaa aagacgccga tgaagagaaa
     6061 gcctccttgc agaagtcgat cagcctcacc agtgccttgc tcacagagaa ggacgcggag
     6121 ctggagaagc tgaggaatga ggtcacagtg ctcaggggag agaatgccac cgccaagtcc
     6181 ctgcactcag ttgtgcagac actggagtct gataaggtga agcttgagct caaggtcaaa
     6241 aacttggaac ttcaactcaa ggagaacaag aggcagctca gcagctcctc aggtaacact
     6301 gatgctcagg cggaagagga tgagagagcc caggagagtc agcaaatgat tgatttcctc
     6361 aactcggtaa tagtggatct tcaaagaaag aaccaagacc tcaagatgaa ggtggagatg
     6421 atgtctgaag ctgcactcaa tggcaacggg gaagacctga acagttatga cagtgatgac
     6481 caggaaaagc agtccaagaa gaaaccccgc ctcttctgtg acatctgtga ctgctttgac
     6541 ctccacgata cagaggactg tcccacccag gcacagatgt cggaagatcc tccccattcc
     6601 actcaccatg gcagccggag cgaggagcgg ccatactgtg agatctgtga gatgtttggg
     6661 cactgggcaa ccaactgcaa tgacgacgag accttctgag gaagccggga gggcaggaag
     6721 ggcttccccg acaaacgccg gctcctcagc agctcccgcc agcattggtg tgcaacttca
     6781 gaagagctcc ttattttttg acccctgtca acaaatctga gaaaatattt tgatcttcaa
     6841 caagtttccc tttcatttcc cctcgtaagt taaaataata ataaatattt ggtaggtggg
     6901 cttgcacttc cgtccttgtt ttctggattt ttaaggttta agacattgta ccaggcacag
     6961 ttcctgtttg ttcctagaga aaccctctgg gacaagtggg accctggcag tatcttattt
     7021 aggaaacttc aaatgatgcc gttgactctc atgtttgcac taaaatgttt cctggctaca
     7081 tctgtatatt taggttgttg ttgttgttgt tatgctttga cactggaatg agttgcaaaa
     7141 aaaccctgtg ccactttgtg atttcctgcc tcatttaaat actctcatct ctaaacccca
     7201 agctcttctc ttcgcactcc ctgctctcag gagggccttt ttccaggctt gacaatactt
     7261 aggtgtgact ataaatcatg aaaacaggta aaagggaggg gaaagcccga actgctgtgg
     7321 ggacattttc taatctatat gctgcaccca tggaccgaca gtggtgtttt ctttactggt
     7381 tttacataat ttcaacgtct atatattata tgtgtatata tttttaaaag aatctatatt
     7441 ttgggaaaaa gtctatacaa tgtgtcttct tttcagattt ttttaccttt atgaaaaaga
     7501 aaacatctaa aggctcacca gcatgtgact gactgggccc aagatgggct ctgcggtggt
     7561 ctctgctgtg aggttccagc tatcgtcttt gtctccatga tgtttcttag ccagatcgga
     7621 gtagctggaa gaacagtctc cggctccttg cttgtgtttc ccttccttag cagataaccc
     7681 cagcagcaaa ctaagccact cttcagagag ctaagctaac tgatctacaa ccctccttta
     7741 tacatttgtg gggtgtgttt gtttgtttgt tttttactgt atttttaaat gaatgtatga
     7801 tgagaaattc aacatgaata attttggatt ttcttatcac aaaaaagata aaacaaagga
     7861 cctcaaccaa ctgaagagtt gaccccgcca gtctgcgtct ctctgtcttc acttgaatgt
     7921 ctttgagaat atgtaaaaag gagccacatg cacctccacg cagtgtgcag gacgagaact
     7981 tccgtcattg tatataggcc tctgccccgt ctccccttaa ggttatccac tgtgcttgat
     8041 gagtgagcag tcaatacatc tgctgcccgt cggcattctg ggttaataaa actataggaa
     8101 ttatttcaca aacaaactat ggaaagcagt attaaaatct gagttctgta tctactttaa
     8161 taaatgtttt gggtctcttt g
//
