LOCUS       XM_017321022            6123 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus CAP-GLY domain containing linker protein 1
            (Clip1), transcript variant X19, mRNA.
ACCESSION   XM_017321022
VERSION     XM_017321022.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017321022.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6123
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..6123
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 51 ESTs, 1304 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 29 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
     CDS             322..4641
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X16"
                     /protein_id="XP_017176511.1"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPVEKTIPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQAAPGRTASPLSTAAATMVSSSP
                     ATPSNIPHKPSQSTAKEPSATPQISNLTKTASESISNLSEAGSVKKGERELKVGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMAATPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEK
                     SRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQ
                     GEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKS
                     KLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDS
                     ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIK
                     VKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEG
                     AEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLK
                     EKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR
                     EDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS
                     FLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEK
                     ASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAE
                     DAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE
                     NQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSV
                     LNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGEN
                     ATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQES
                     QQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKKPRL
                     FCDICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRSEERPYCEICEMFGHWATNCNDD
                     ETF"
ORIGIN      
        1 aggggcggca ggggagctcg cgggcggcag cggcccgggc acggggaggg gcggcgcggc
       61 gtcttctccc ggccccgcgg cggcggcggc agcgcgtcac gttctcttcc ccgccccgag
      121 ccgaagagcc ggggaggcgg gaggcggcgg ccgcggcggc tgctgctgct gctgctggga
      181 ggcaggtgac ggcgaccagc ggcgtcccag gcgatttgac cgagaggctg agttctctat
      241 aggaacaccc acatttgtat ggatgagtgg ggaaagatag cggcagcaga caaggaaaaa
      301 gcgtcctgac ctcccgagaa catgagtatg ctaaaaccca gcggcctgaa ggcccctacc
      361 aagatcctta agccgggaag cacagccttg aagacgcctg ctgctgctgc agctccagtg
      421 gagaagacaa tacccagtga gaaagcctcg ggccctccat cctccgagac ccaagaggag
      481 tttgtggatg actttcgagt tggagaacgt gtttgggtga acgggaataa gcccggattt
      541 atccagtttc ttggggaaac tcagttcgca ccaggccagt gggctgggat tgttttagat
      601 gaacccatag ggaagaacga tggctctgtg gcgggagtgc ggtatttcca gtgtgaacct
      661 ttaaagggca tattcacccg accttcaaag ctaacgagga aggtgcaggc agaagatgaa
      721 gccaacggcc tgcaggcagc tcctgggaga actgcttcac ctctgtccac tgctgcagct
      781 accatggtgt cttcttctcc agccactccc tcaaatattc cccacaaacc gtcccagtca
      841 acggcaaaag aaccttcggc tacacctcaa attagcaacc tcacaaaaac tgccagtgag
      901 tcgatctcca acctttcaga ggctggctct gtcaagaagg gggagcggga gctcaaggtc
      961 ggagacaggg tgctggttgg tggcactaag gctggcgtag tccgctttct tggcgagacc
     1021 gactttgcca agggggagtg gtgtggtgtg gagttagacg agcctttggg gaagaacgat
     1081 ggtgctgtgg ccggaacaag gtattttcag tgtcaaccca aatatggatt gttcgctcct
     1141 gtccacaaag tgacaaagat tggcttcccg tctactaccc cagccaaagc caaagccgcc
     1201 gctgtgaggc gagtgatggc cgccacgccc gccagcctga agcgaagccc ttctgcctcc
     1261 tccctcagct ccatgagctc cgtggcctcc tctgtgagca gcaaacccag ccggacagga
     1321 ctattgactg aaacctcctc ccgctacgcc cgcaagatct cgggcaccac tgccctccag
     1381 gaggcgctga aggagaagca gcagcacatt gagcagctgc tggctgagcg ggacctggag
     1441 cgggccgagg tggccaaggc taccagccac gtgggggaaa tagagcagga gctagccctg
     1501 gcccgagatg ggcatgacca gcatgtcctg gaactagagg ccaagatgga ccagctacgg
     1561 accatggtgg aagctgctga cagggagaaa gtggagctgc tcaaccagct ggaagaggag
     1621 aagaggaagg ttgaggacct tcagttccga gttgaagaag aatcaattac caaaggcgat
     1681 cttgagcaaa agagcccgat ttctgaagat cccgagaata cgcagaccaa actggagcat
     1741 gcccgcacta aggagcttga acagagcctg ctctttgaaa agaccaaagc tgacaaactc
     1801 cagagggagt tagaagacac tagggtggct accgtctcag aaaagtcccg aataatggaa
     1861 ctagaaaagg acctagcatt gagagcacag gaagtagctg agctccgaag aaggctagag
     1921 tccagtaaac ctcctgggga tgtggatatg tctctctccc ttttgcaaga aataagtgct
     1981 ttgcaagaaa agctagaagc catccatact gaccaccagg gcgagatgac ttctttgaag
     2041 gaacacttcg gagctcgaga ggaggcgttt cagaaggaga tcaaggctct gcacacggcc
     2101 actgagaagc tttccaaaga gaacgagtcc ctgagaagca agctcgacca cgctaataag
     2161 gagaactccg atgtgatagc tctatggaag tccaaactgg agaccgccat agcatcccac
     2221 cagcaggcaa tggaggagct gaaggtgtcc tttagcaaag gcattggaac ggactccgct
     2281 gaatttgctg agttaaagac acagatagag agactgagac tagattacca gcacgaaata
     2341 gaaagtttac agagtaaaca ggactctgag cggtctgctc atgctaaaga gatggagacc
     2401 atgcaggcca agctgatgaa gatcattaaa gagaaggagg acagcctgga ggccgtcaaa
     2461 gcgagactgg acagtgcaga agaccagcac ctagtggaaa tggaggacac gctaaacaaa
     2521 ctgcaggagg cggagattaa ggtaaaggag ctagaggttc tgcaggccaa gtacactgaa
     2581 caaagcgagg tcattggtaa ttttacatcg cagctcagtg ctgtcaaaga aaagctcttg
     2641 gatcttgatg cgcttcggaa agccaattcc gaaggtaaac tggagctcga gacacttaga
     2701 cagcagcttg agggagctga aaagcagatt aaaaacttag agactgaaag gaacgctgaa
     2761 agtagcaagg ctaatagcat taccaaagag ctccaggaga aagagctagt gctcactggt
     2821 ctgcaggaca gtttgaatca agtcaatcaa gtgaaggaga ctttggagaa agaacttcag
     2881 actttgaaag aaaagtttgc cagtacttca gaggaggcgg tctctgctca gacaaggatg
     2941 caagataccg taaataaact gcaccaaaag gaggaacagt ttaacgtgtt gtcgtctgaa
     3001 ctggagaagt tgagagaaaa tttaacagac atggaggcaa aatttaaaga gaaggatgat
     3061 cgagaagatc agctggtaaa ggcaaaggaa aaattagaaa acgacattgc agaaataatg
     3121 aagatgtcag gagataactc ttctcagctg acaaagatga atgatgaatt acgtctgaag
     3181 gaaagatccg tggaagaact ccagctcaag cttacaaagg ccaatgaaaa cgccagtttt
     3241 ctgcagaaga gtattggcga agtgactctt aaagctgagc agagtcagca gcaagcagcc
     3301 agaaaacatg aagaagaaaa gaaagagttg gaggaaaaac tgttggaact ggaaaagaag
     3361 atggaaacaa gctacaacca gtgtcaggac ctgaaagcta agtatgaaaa agccagttct
     3421 gagactaaaa caaagcatga agaaatcctg cagaacctcc agaagatgct ggcggacaca
     3481 gaggataagc tgaaggctgc tcaggaggcg aacagagatc tgatgcagga catggaggag
     3541 ctgaaaacac aggccgacaa agccaaagct gctcagactg cagaagacgc catgcagatc
     3601 atggaacaga tgaccaaaga gaaaacagaa acgctggcct ccttggagga caccaagcaa
     3661 acaaatgcaa gactacagaa tgaattggac acacttaagg aaaacaactt gaaaactgtg
     3721 gaagagctga acaagtcaaa agaactgctg agtgtagaga accaaaaaat ggaagaattc
     3781 aagaaagaaa tagaaaccct aaagcaggca gcagctcaga agtcccagca gctttcagca
     3841 ctgcaggaag agaacgtcaa acttgccgag gagctgggga gaacccggga cgaagtcaca
     3901 agtcaccaga agctggaaga agaacgatct gtactcaata atcagttgtt agaaatgaaa
     3961 aagagagaat ctgagttcag aaaagacgcc gatgaagaga aagcctcctt gcagaagtcg
     4021 atcagcctca ccagtgcctt gctcacagag aaggacgcgg agctggagaa gctgaggaat
     4081 gaggtcacag tgctcagggg agagaatgcc accgccaagt ccctgcactc agttgtgcag
     4141 acactggagt ctgataaggt gaagcttgag ctcaaggtca aaaacttgga acttcaactc
     4201 aaggagaaca agaggcagct cagcagctcc tcaggtaaca ctgatgctca ggcggaagag
     4261 gatgagagag cccaggagag tcagcaaatg attgatttcc tcaactcggt aatagtggat
     4321 cttcaaagaa agaaccaaga cctcaagatg aaggtggaga tgatgtctga agctgcactc
     4381 aatggcaacg gggaagacct gaacagttat gacagtgatg accaggaaaa gcagtccaag
     4441 aagaaacccc gcctcttctg tgacatctgt gactgctttg acctccacga tacagaggac
     4501 tgtcccaccc aggcacagat gtcggaagat cctccccatt ccactcacca tggcagccgg
     4561 agcgaggagc ggccatactg tgagatctgt gagatgtttg ggcactgggc aaccaactgc
     4621 aatgacgacg agaccttctg aggaagccgg gagggcagga agggcttccc cgacaaacgc
     4681 cggctcctca gcagctcccg ccagcattgg tgtgcaactt cagaagagct ccttattttt
     4741 tgacccctgt caacaaatct gagaaaatat tttgatcttc aacaagtttc cctttcattt
     4801 cccctcgtaa gttaaaataa taataaatat ttggtaggtg ggcttgcact tccgtccttg
     4861 ttttctggat ttttaaggtt taagacattg taccaggcac agttcctgtt tgttcctaga
     4921 gaaaccctct gggacaagtg ggaccctggc agtatcttat ttaggaaact tcaaatgatg
     4981 ccgttgactc tcatgtttgc actaaaatgt ttcctggcta catctgtata tttaggttgt
     5041 tgttgttgtt gttatgcttt gacactggaa tgagttgcaa aaaaaccctg tgccactttg
     5101 tgatttcctg cctcatttaa atactctcat ctctaaaccc caagctcttc tcttcgcact
     5161 ccctgctctc aggagggcct ttttccaggc ttgacaatac ttaggtgtga ctataaatca
     5221 tgaaaacagg taaaagggag gggaaagccc gaactgctgt ggggacattt tctaatctat
     5281 atgctgcacc catggaccga cagtggtgtt ttctttactg gttttacata atttcaacgt
     5341 ctatatatta tatgtgtata tatttttaaa agaatctata ttttgggaaa aagtctatac
     5401 aatgtgtctt cttttcagat ttttttacct ttatgaaaaa gaaaacatct aaaggctcac
     5461 cagcatgtga ctgactgggc ccaagatggg ctctgcggtg gtctctgctg tgaggttcca
     5521 gctatcgtct ttgtctccat gatgtttctt agccagatcg gagtagctgg aagaacagtc
     5581 tccggctcct tgcttgtgtt tcccttcctt agcagataac cccagcagca aactaagcca
     5641 ctcttcagag agctaagcta actgatctac aaccctcctt tatacatttg tggggtgtgt
     5701 ttgtttgttt gttttttact gtatttttaa atgaatgtat gatgagaaat tcaacatgaa
     5761 taattttgga ttttcttatc acaaaaaaga taaaacaaag gacctcaacc aactgaagag
     5821 ttgaccccgc cagtctgcgt ctctctgtct tcacttgaat gtctttgaga atatgtaaaa
     5881 aggagccaca tgcacctcca cgcagtgtgc aggacgagaa cttccgtcat tgtatatagg
     5941 cctctgcccc gtctcccctt aaggttatcc actgtgcttg atgagtgagc agtcaataca
     6001 tctgctgccc gtcggcattc tgggttaata aaactatagg aattatttca caaacaaact
     6061 atggaaagca gtattaaaat ctgagttctg tatctacttt aataaatgtt ttgggtctct
     6121 ttg
//
