LOCUS       XM_006530417            8184 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus CAP-GLY domain containing linker protein 1
            (Clip1), transcript variant X11, mRNA.
ACCESSION   XM_006530417
VERSION     XM_006530417.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006530417.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8184
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..8184
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 54 ESTs, 1184 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
     CDS             322..6702
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X9"
                     /protein_id="XP_006530480.1"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPVEKTIPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQAAPGRTASPLSTAAATMVSSSP
                     ATPSNIPHKPSQSTAKEPSATPQISNLTKTASESISNLSEAGSVKKGERELKVGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMAATPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEK
                     SRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQ
                     GEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKS
                     KLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDS
                     ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIK
                     ANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQ
                     DTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEI
                     MKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQ
                     QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQK
                     MLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTSAKKEIEVMSEELRGLK
                     SEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETLHLEKERVSEE
                     KQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEASKVSMQVLIE
                     ELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKLQSAYEELVKD
                     QKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQFEKDTLRQGQE
                     KLSASLEATLQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSNSSLTKLLEEI
                     KTCRAITDSECIQLLHEKESLAASERTLLAEKEELLSENRIITEKLSKQSEEVARLEM
                     GLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLADRESSIKTIGDL
                     RRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKENQELTSSKCDLSLLLKEAQD
                     AKKNLEKEHTSMIQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLNEEIREIQQTL
                     ILEKEARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQLQTENFTLTQEKTNSEQ
                     KVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNH
                     EVALTERAEVLQDNKNLLAEKREMMLRNEEALKEKEKLEESYFILQKEISQLAQTNSH
                     ISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAMQIMEQMTKEKTET
                     LASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQ
                     AAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNT
                     LRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSV
                     VQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNS
                     VIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKKPRLFCDICDCFD
                     LHDTEDCPTQAQMSEDPPHSTHHGSRSEERPYCEICEMFGHWATNCNDDETF"
ORIGIN      
        1 aggggcggca ggggagctcg cgggcggcag cggcccgggc acggggaggg gcggcgcggc
       61 gtcttctccc ggccccgcgg cggcggcggc agcgcgtcac gttctcttcc ccgccccgag
      121 ccgaagagcc ggggaggcgg gaggcggcgg ccgcggcggc tgctgctgct gctgctggga
      181 ggcaggtgac ggcgaccagc ggcgtcccag gcgatttgac cgagaggctg agttctctat
      241 aggaacaccc acatttgtat ggatgagtgg ggaaagatag cggcagcaga caaggaaaaa
      301 gcgtcctgac ctcccgagaa catgagtatg ctaaaaccca gcggcctgaa ggcccctacc
      361 aagatcctta agccgggaag cacagccttg aagacgcctg ctgctgctgc agctccagtg
      421 gagaagacaa tacccagtga gaaagcctcg ggccctccat cctccgagac ccaagaggag
      481 tttgtggatg actttcgagt tggagaacgt gtttgggtga acgggaataa gcccggattt
      541 atccagtttc ttggggaaac tcagttcgca ccaggccagt gggctgggat tgttttagat
      601 gaacccatag ggaagaacga tggctctgtg gcgggagtgc ggtatttcca gtgtgaacct
      661 ttaaagggca tattcacccg accttcaaag ctaacgagga aggtgcaggc agaagatgaa
      721 gccaacggcc tgcaggcagc tcctgggaga actgcttcac ctctgtccac tgctgcagct
      781 accatggtgt cttcttctcc agccactccc tcaaatattc cccacaaacc gtcccagtca
      841 acggcaaaag aaccttcggc tacacctcaa attagcaacc tcacaaaaac tgccagtgag
      901 tcgatctcca acctttcaga ggctggctct gtcaagaagg gggagcggga gctcaaggtc
      961 ggagacaggg tgctggttgg tggcactaag gctggcgtag tccgctttct tggcgagacc
     1021 gactttgcca agggggagtg gtgtggtgtg gagttagacg agcctttggg gaagaacgat
     1081 ggtgctgtgg ccggaacaag gtattttcag tgtcaaccca aatatggatt gttcgctcct
     1141 gtccacaaag tgacaaagat tggcttcccg tctactaccc cagccaaagc caaagccgcc
     1201 gctgtgaggc gagtgatggc cgccacgccc gccagcctga agcgaagccc ttctgcctcc
     1261 tccctcagct ccatgagctc cgtggcctcc tctgtgagca gcaaacccag ccggacagga
     1321 ctattgactg aaacctcctc ccgctacgcc cgcaagatct cgggcaccac tgccctccag
     1381 gaggcgctga aggagaagca gcagcacatt gagcagctgc tggctgagcg ggacctggag
     1441 cgggccgagg tggccaaggc taccagccac gtgggggaaa tagagcagga gctagccctg
     1501 gcccgagatg ggcatgacca gcatgtcctg gaactagagg ccaagatgga ccagctacgg
     1561 accatggtgg aagctgctga cagggagaaa gtggagctgc tcaaccagct ggaagaggag
     1621 aagaggaagg ttgaggacct tcagttccga gttgaagaag aatcaattac caaaggcgat
     1681 cttgagcaaa agagcccgat ttctgaagat cccgagaata cgcagaccaa actggagcat
     1741 gcccgcacta aggagcttga acagagcctg ctctttgaaa agaccaaagc tgacaaactc
     1801 cagagggagt tagaagacac tagggtggct accgtctcag aaaagtcccg aataatggaa
     1861 ctagaaaagg acctagcatt gagagcacag gaagtagctg agctccgaag aaggctagag
     1921 tccagtaaac ctcctgggga tgtggatatg tctctctccc ttttgcaaga aataagtgct
     1981 ttgcaagaaa agctagaagc catccatact gaccaccagg gcgagatgac ttctttgaag
     2041 gaacacttcg gagctcgaga ggaggcgttt cagaaggaga tcaaggctct gcacacggcc
     2101 actgagaagc tttccaaaga gaacgagtcc ctgagaagca agctcgacca cgctaataag
     2161 gagaactccg atgtgatagc tctatggaag tccaaactgg agaccgccat agcatcccac
     2221 cagcaggcaa tggaggagct gaaggtgtcc tttagcaaag gcattggaac ggactccgct
     2281 gaatttgctg agttaaagac acagatagag agactgagac tagattacca gcacgaaata
     2341 gaaagtttac agagtaaaca ggactctgag cggtctgctc atgctaaaga gatggagacc
     2401 atgcaggcca agctgatgaa gatcattaaa gagaaggagg acagcctgga ggccgtcaaa
     2461 gcgagactgg acagtgcaga agaccagcac ctagtggaaa tggaggacac gctaaacaaa
     2521 ctgcaggagg cggagattaa ggctaatagc attaccaaag agctccagga gaaagagcta
     2581 gtgctcactg gtctgcagga cagtttgaat caagtcaatc aagtgaagga gactttggag
     2641 aaagaacttc agactttgaa agaaaagttt gccagtactt cagaggaggc ggtctctgct
     2701 cagacaagga tgcaagatac cgtaaataaa ctgcaccaaa aggaggaaca gtttaacgtg
     2761 ttgtcgtctg aactggagaa gttgagagaa aatttaacag acatggaggc aaaatttaaa
     2821 gagaaggatg atcgagaaga tcagctggta aaggcaaagg aaaaattaga aaacgacatt
     2881 gcagaaataa tgaagatgtc aggagataac tcttctcagc tgacaaagat gaatgatgaa
     2941 ttacgtctga aggaaagatc cgtggaagaa ctccagctca agcttacaaa ggccaatgaa
     3001 aacgccagtt ttctgcagaa gagtattggc gaagtgactc ttaaagctga gcagagtcag
     3061 cagcaagcag ccagaaaaca tgaagaagaa aagaaagagt tggaggaaaa actgttggaa
     3121 ctggaaaaga agatggaaac aagctacaac cagtgtcagg acctgaaagc taagtatgaa
     3181 aaagccagtt ctgagactaa aacaaagcat gaagaaatcc tgcagaacct ccagaagatg
     3241 ctggcggaca cagaggataa gctgaaggct gctcaggagg cgaacagaga tctgatgcag
     3301 gacatggagg agctgaaaac acaggccgac aaagccaaat cgctaactta tttgttaaca
     3361 tcagccaaaa aagagattga agtgatgtca gaagagctga ggggtctgaa atcagagaag
     3421 cagctctatg cccaggaggc aaatgcttta aagttagaga aaggttctct tttatcaaag
     3481 ctgatagaag tggagaccaa gatcactttg cttcaggaag accagcagaa actctggtcg
     3541 gtaaacgaaa ccctccactt agaaaaggag agagtctcgg aagagaagca ggtcgccgag
     3601 aaacgctatc agcaggagca ccgggacagg gagtccctag tggccgagag agagaaacta
     3661 cttaaggaga tcaacgctgc ccaggaagaa ctcctgaaga tgcacatgga gaacgactcc
     3721 ctggaagcct ccaaggtgag catgcaggtg ctcatcgagg agctccgctt ctgcaaggac
     3781 aagctgatgg ccatgtcgga gaaggcgcgc gccgagaaag agcacctgga gggccaggtc
     3841 aagaagctca ccgccgagaa cttggtcctg gtcaaagaca aggatgacgt catccagaag
     3901 ctgcagagcg cctacgagga gctcgtcaag gaccagaagg ctctggtgca agagatcgag
     3961 gacctcacga ctgagaagaa gtcagctgcg gagaagcaga tgagcctgga caacacctgc
     4021 ctcaccctga aggccgagcg ggagaacctt ctccagacca accgagacct gcagtttgag
     4081 aaggacacgc tgcgccaggg ccaggagaag ctgagcgcca gcctggaggc caccctgcag
     4141 gtcaaacagc tgctcagcac ggaggcggag accctgcgca cgcagctgga ctgtgccagc
     4201 aaagcgctga ggaaggcgga gctggatatg agacagctcc agacctcgaa ctccagcctc
     4261 accaaactcc tggaagagat taagacctgc cgcgccatca cggactccga gtgtatccag
     4321 ctcctccacg agaaggagag cttggcggcc tccgagcgga cgctcctggc agagaaggag
     4381 gagctgctca gcgagaatag aatcatcacc gagaaactca gcaaacaatc agaagaggtg
     4441 gcccggctcg agatgggcct gaacgagaag atcacgtact taacctccga gaaggaggtg
     4501 gcctgccaga aagtcgccaa gctgaaaaag cagcaggata gtctcctgaa ggagaagtcg
     4561 gccctggagc tgcagaacgg agatctgctc gctgacaggg aaagttctat caagaccata
     4621 ggggatctga gaaggaagta tgaccaagag gctacaaaca ggcggattgt tatgcaggag
     4681 aagatgaagc tgctcggtaa catcgatgcc ctcaagaagg agctgcagga aagaaagaag
     4741 gagaaccagg agctgacgag cagcaagtgc gacctctcct tgttgctgaa agaggctcag
     4801 gacgccaaaa agaatctcga aaaagagcac actagcatga tacaggcgaa ggataacttg
     4861 aacgctgagc tgaagacctg ttgctgcgag aagaacatgt tgctgaggga tggcctgaac
     4921 ctgcaggaag agtgtcagaa gctaaacgag gagattcggg aaatccagca gacgttaatc
     4981 ctggagaagg aggccagggc caaggagagc gagacctctt tgtacgagaa caacaagctc
     5041 catgggagag tagtgctcct ggaggaagag atacagaggc tgagggtgtg cagcgagcag
     5101 ctccaaactg agaatttcac acttacccaa gagaagacca actcagagca gaaggtggag
     5161 gagatcatta aggaaaagga gctcctgagt gcagagacgg ctcagctcgc ggccaacatc
     5221 gagaccctca aaagcgactt cgctgccctt tccaagtcca agttggaact gcaagaacta
     5281 cacagctgcc tcaccaagat actggatgac ctgcggctga accacgaggt ggccttgaca
     5341 gagagggccg aggtgctcca ggacaacaag aacctcctgg ctgagaaacg ggagatgatg
     5401 ctgagaaacg aagaggcgct gaaggagaag gagaagctgg aagagagcta cttcatcctt
     5461 cagaaagaga ttagccagct ggcccagacc aacagccaca tctcagccaa cctcctagag
     5521 tcccaaagcg agaaccggac tctgaggaaa gacaagagca agcttaccct taaaattaga
     5581 gagcttgaga cccttcattc gttcacggct gctcagactg cagaagacgc catgcagatc
     5641 atggaacaga tgaccaaaga gaaaacagaa acgctggcct ccttggagga caccaagcaa
     5701 acaaatgcaa gactacagaa tgaattggac acacttaagg aaaacaactt gaaaactgtg
     5761 gaagagctga acaagtcaaa agaactgctg agtgtagaga accaaaaaat ggaagaattc
     5821 aagaaagaaa tagaaaccct aaagcaggca gcagctcaga agtcccagca gctttcagca
     5881 ctgcaggaag agaacgtcaa acttgccgag gagctgggga gaacccggga cgaagtcaca
     5941 agtcaccaga agctggaaga agaacgatct gtactcaata atcagttgtt agaaatgaaa
     6001 aagagcttgc ccagtaacac tttaagagaa tctgagttca gaaaagacgc cgatgaagag
     6061 aaagcctcct tgcagaagtc gatcagcctc accagtgcct tgctcacaga gaaggacgcg
     6121 gagctggaga agctgaggaa tgaggtcaca gtgctcaggg gagagaatgc caccgccaag
     6181 tccctgcact cagttgtgca gacactggag tctgataagg tgaagcttga gctcaaggtc
     6241 aaaaacttgg aacttcaact caaggagaac aagaggcagc tcagcagctc ctcaggtaac
     6301 actgatgctc aggcggaaga ggatgagaga gcccaggaga gtcagcaaat gattgatttc
     6361 ctcaactcgg taatagtgga tcttcaaaga aagaaccaag acctcaagat gaaggtggag
     6421 atgatgtctg aagctgcact caatggcaac ggggaagacc tgaacagtta tgacagtgat
     6481 gaccaggaaa agcagtccaa gaagaaaccc cgcctcttct gtgacatctg tgactgcttt
     6541 gacctccacg atacagagga ctgtcccacc caggcacaga tgtcggaaga tcctccccat
     6601 tccactcacc atggcagccg gagcgaggag cggccatact gtgagatctg tgagatgttt
     6661 gggcactggg caaccaactg caatgacgac gagaccttct gaggaagccg ggagggcagg
     6721 aagggcttcc ccgacaaacg ccggctcctc agcagctccc gccagcattg gtgtgcaact
     6781 tcagaagagc tccttatttt ttgacccctg tcaacaaatc tgagaaaata ttttgatctt
     6841 caacaagttt ccctttcatt tcccctcgta agttaaaata ataataaata tttggtaggt
     6901 gggcttgcac ttccgtcctt gttttctgga tttttaaggt ttaagacatt gtaccaggca
     6961 cagttcctgt ttgttcctag agaaaccctc tgggacaagt gggaccctgg cagtatctta
     7021 tttaggaaac ttcaaatgat gccgttgact ctcatgtttg cactaaaatg tttcctggct
     7081 acatctgtat atttaggttg ttgttgttgt tgttatgctt tgacactgga atgagttgca
     7141 aaaaaaccct gtgccacttt gtgatttcct gcctcattta aatactctca tctctaaacc
     7201 ccaagctctt ctcttcgcac tccctgctct caggagggcc tttttccagg cttgacaata
     7261 cttaggtgtg actataaatc atgaaaacag gtaaaaggga ggggaaagcc cgaactgctg
     7321 tggggacatt ttctaatcta tatgctgcac ccatggaccg acagtggtgt tttctttact
     7381 ggttttacat aatttcaacg tctatatatt atatgtgtat atatttttaa aagaatctat
     7441 attttgggaa aaagtctata caatgtgtct tcttttcaga tttttttacc tttatgaaaa
     7501 agaaaacatc taaaggctca ccagcatgtg actgactggg cccaagatgg gctctgcggt
     7561 ggtctctgct gtgaggttcc agctatcgtc tttgtctcca tgatgtttct tagccagatc
     7621 ggagtagctg gaagaacagt ctccggctcc ttgcttgtgt ttcccttcct tagcagataa
     7681 ccccagcagc aaactaagcc actcttcaga gagctaagct aactgatcta caaccctcct
     7741 ttatacattt gtggggtgtg tttgtttgtt tgttttttac tgtattttta aatgaatgta
     7801 tgatgagaaa ttcaacatga ataattttgg attttcttat cacaaaaaag ataaaacaaa
     7861 ggacctcaac caactgaaga gttgaccccg ccagtctgcg tctctctgtc ttcacttgaa
     7921 tgtctttgag aatatgtaaa aaggagccac atgcacctcc acgcagtgtg caggacgaga
     7981 acttccgtca ttgtatatag gcctctgccc cgtctcccct taaggttatc cactgtgctt
     8041 gatgagtgag cagtcaatac atctgctgcc cgtcggcatt ctgggttaat aaaactatag
     8101 gaattatttc acaaacaaac tatggaaagc agtattaaaa tctgagttct gtatctactt
     8161 taataaatgt tttgggtctc tttg
//
