LOCUS       XM_006530416            8214 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus CAP-GLY domain containing linker protein 1
            (Clip1), transcript variant X10, mRNA.
ACCESSION   XM_006530416
VERSION     XM_006530416.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006530416.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8214
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..8214
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 50 ESTs, 1169 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
     CDS             322..6732
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X8"
                     /protein_id="XP_006530479.1"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPVEKTIPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQAAPGRTASPLSTAAATMVSSSP
                     ATPSNIPHKPSQSTAKEPSATPQISNLTKTASESISNLSEAGSVKKGERELKVGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMAATPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     HVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKS
                     PISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEK
                     DLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKE
                     HFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIAS
                     HQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKE
                     METMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQ
                     AKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNL
                     ETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSE
                     EAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAK
                     EKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGE
                     VTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTK
                     HEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLLTSAKKEIE
                     VMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNETL
                     HLEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMHMENDSLEA
                     SKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKDKDDVIQKL
                     QSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLLQTNRDLQF
                     EKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCASKALRKAELDMRQLQTSN
                     SSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERTLLAEKEELLSENRIITEKLSK
                     QSEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQNGDLLADR
                     ESSIKTIGDLRRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKENQELTSSKCD
                     LSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTCCCEKNMLLRDGLNLQEECQKLN
                     EEIREIQQTLILEKEARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSEQLQTENFT
                     LTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLT
                     KILDDLRLNHEVALTERAEVLQDNKNLLAEKREMMLRNEEALKEKEKLEESYFILQKE
                     ISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAMQIM
                     EQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEE
                     FKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLL
                     EMKKSLPSNTLRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE
                     NATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQE
                     SQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKKPR
                     LFCDICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRSEERPYCEICEMFGHWATNCND
                     DETF"
ORIGIN      
        1 aggggcggca ggggagctcg cgggcggcag cggcccgggc acggggaggg gcggcgcggc
       61 gtcttctccc ggccccgcgg cggcggcggc agcgcgtcac gttctcttcc ccgccccgag
      121 ccgaagagcc ggggaggcgg gaggcggcgg ccgcggcggc tgctgctgct gctgctggga
      181 ggcaggtgac ggcgaccagc ggcgtcccag gcgatttgac cgagaggctg agttctctat
      241 aggaacaccc acatttgtat ggatgagtgg ggaaagatag cggcagcaga caaggaaaaa
      301 gcgtcctgac ctcccgagaa catgagtatg ctaaaaccca gcggcctgaa ggcccctacc
      361 aagatcctta agccgggaag cacagccttg aagacgcctg ctgctgctgc agctccagtg
      421 gagaagacaa tacccagtga gaaagcctcg ggccctccat cctccgagac ccaagaggag
      481 tttgtggatg actttcgagt tggagaacgt gtttgggtga acgggaataa gcccggattt
      541 atccagtttc ttggggaaac tcagttcgca ccaggccagt gggctgggat tgttttagat
      601 gaacccatag ggaagaacga tggctctgtg gcgggagtgc ggtatttcca gtgtgaacct
      661 ttaaagggca tattcacccg accttcaaag ctaacgagga aggtgcaggc agaagatgaa
      721 gccaacggcc tgcaggcagc tcctgggaga actgcttcac ctctgtccac tgctgcagct
      781 accatggtgt cttcttctcc agccactccc tcaaatattc cccacaaacc gtcccagtca
      841 acggcaaaag aaccttcggc tacacctcaa attagcaacc tcacaaaaac tgccagtgag
      901 tcgatctcca acctttcaga ggctggctct gtcaagaagg gggagcggga gctcaaggtc
      961 ggagacaggg tgctggttgg tggcactaag gctggcgtag tccgctttct tggcgagacc
     1021 gactttgcca agggggagtg gtgtggtgtg gagttagacg agcctttggg gaagaacgat
     1081 ggtgctgtgg ccggaacaag gtattttcag tgtcaaccca aatatggatt gttcgctcct
     1141 gtccacaaag tgacaaagat tggcttcccg tctactaccc cagccaaagc caaagccgcc
     1201 gctgtgaggc gagtgatggc cgccacgccc gccagcctga agcgaagccc ttctgcctcc
     1261 tccctcagct ccatgagctc cgtggcctcc tctgtgagca gcaaacccag ccggacagga
     1321 ctacatgtcc tggaactaga ggccaagatg gaccagctac ggaccatggt ggaagctgct
     1381 gacagggaga aagtggagct gctcaaccag ctggaagagg agaagaggaa ggttgaggac
     1441 cttcagttcc gagttgaaga agaatcaatt accaaaggcg atcttgagca aaagagcccg
     1501 atttctgaag atcccgagaa tacgcagacc aaactggagc atgcccgcac taaggagctt
     1561 gaacagagcc tgctctttga aaagaccaaa gctgacaaac tccagaggga gttagaagac
     1621 actagggtgg ctaccgtctc agaaaagtcc cgaataatgg aactagaaaa ggacctagca
     1681 ttgagagcac aggaagtagc tgagctccga agaaggctag agtccagtaa acctcctggg
     1741 gatgtggata tgtctctctc ccttttgcaa gaaataagtg ctttgcaaga aaagctagaa
     1801 gccatccata ctgaccacca gggcgagatg acttctttga aggaacactt cggagctcga
     1861 gaggaggcgt ttcagaagga gatcaaggct ctgcacacgg ccactgagaa gctttccaaa
     1921 gagaacgagt ccctgagaag caagctcgac cacgctaata aggagaactc cgatgtgata
     1981 gctctatgga agtccaaact ggagaccgcc atagcatccc accagcaggc aatggaggag
     2041 ctgaaggtgt cctttagcaa aggcattgga acggactccg ctgaatttgc tgagttaaag
     2101 acacagatag agagactgag actagattac cagcacgaaa tagaaagttt acagagtaaa
     2161 caggactctg agcggtctgc tcatgctaaa gagatggaga ccatgcaggc caagctgatg
     2221 aagatcatta aagagaagga ggacagcctg gaggccgtca aagcgagact ggacagtgca
     2281 gaagaccagc acctagtgga aatggaggac acgctaaaca aactgcagga ggcggagatt
     2341 aaggtaaagg agctagaggt tctgcaggcc aagtacactg aacaaagcga ggtcattggt
     2401 aattttacat cgcagctcag tgctgtcaaa gaaaagctct tggatcttga tgcgcttcgg
     2461 aaagccaatt ccgaaggtaa actggagctc gagacactta gacagcagct tgagggagct
     2521 gaaaagcaga ttaaaaactt agagactgaa aggaacgctg aaagtagcaa ggctaatagc
     2581 attaccaaag agctccagga gaaagagcta gtgctcactg gtctgcagga cagtttgaat
     2641 caagtcaatc aagtgaagga gactttggag aaagaacttc agactttgaa agaaaagttt
     2701 gccagtactt cagaggaggc ggtctctgct cagacaagga tgcaagatac cgtaaataaa
     2761 ctgcaccaaa aggaggaaca gtttaacgtg ttgtcgtctg aactggagaa gttgagagaa
     2821 aatttaacag acatggaggc aaaatttaaa gagaaggatg atcgagaaga tcagctggta
     2881 aaggcaaagg aaaaattaga aaacgacatt gcagaaataa tgaagatgtc aggagataac
     2941 tcttctcagc tgacaaagat gaatgatgaa ttacgtctga aggaaagatc cgtggaagaa
     3001 ctccagctca agcttacaaa ggccaatgaa aacgccagtt ttctgcagaa gagtattggc
     3061 gaagtgactc ttaaagctga gcagagtcag cagcaagcag ccagaaaaca tgaagaagaa
     3121 aagaaagagt tggaggaaaa actgttggaa ctggaaaaga agatggaaac aagctacaac
     3181 cagtgtcagg acctgaaagc taagtatgaa aaagccagtt ctgagactaa aacaaagcat
     3241 gaagaaatcc tgcagaacct ccagaagatg ctggcggaca cagaggataa gctgaaggct
     3301 gctcaggagg cgaacagaga tctgatgcag gacatggagg agctgaaaac acaggccgac
     3361 aaagccaaat cgctaactta tttgttaaca tcagccaaaa aagagattga agtgatgtca
     3421 gaagagctga ggggtctgaa atcagagaag cagctctatg cccaggaggc aaatgcttta
     3481 aagttagaga aaggttctct tttatcaaag ctgatagaag tggagaccaa gatcactttg
     3541 cttcaggaag accagcagaa actctggtcg gtaaacgaaa ccctccactt agaaaaggag
     3601 agagtctcgg aagagaagca ggtcgccgag aaacgctatc agcaggagca ccgggacagg
     3661 gagtccctag tggccgagag agagaaacta cttaaggaga tcaacgctgc ccaggaagaa
     3721 ctcctgaaga tgcacatgga gaacgactcc ctggaagcct ccaaggtgag catgcaggtg
     3781 ctcatcgagg agctccgctt ctgcaaggac aagctgatgg ccatgtcgga gaaggcgcgc
     3841 gccgagaaag agcacctgga gggccaggtc aagaagctca ccgccgagaa cttggtcctg
     3901 gtcaaagaca aggatgacgt catccagaag ctgcagagcg cctacgagga gctcgtcaag
     3961 gaccagaagg ctctggtgca agagatcgag gacctcacga ctgagaagaa gtcagctgcg
     4021 gagaagcaga tgagcctgga caacacctgc ctcaccctga aggccgagcg ggagaacctt
     4081 ctccagacca accgagacct gcagtttgag aaggacacgc tgcgccaggg ccaggagaag
     4141 ctgagcgcca gcctggaggc caccctgcag gtcaaacagc tgctcagcac ggaggcggag
     4201 accctgcgca cgcagctgga ctgtgccagc aaagcgctga ggaaggcgga gctggatatg
     4261 agacagctcc agacctcgaa ctccagcctc accaaactcc tggaagagat taagacctgc
     4321 cgcgccatca cggactccga gtgtatccag ctcctccacg agaaggagag cttggcggcc
     4381 tccgagcgga cgctcctggc agagaaggag gagctgctca gcgagaatag aatcatcacc
     4441 gagaaactca gcaaacaatc agaagaggtg gcccggctcg agatgggcct gaacgagaag
     4501 atcacgtact taacctccga gaaggaggtg gcctgccaga aagtcgccaa gctgaaaaag
     4561 cagcaggata gtctcctgaa ggagaagtcg gccctggagc tgcagaacgg agatctgctc
     4621 gctgacaggg aaagttctat caagaccata ggggatctga gaaggaagta tgaccaagag
     4681 gctacaaaca ggcggattgt tatgcaggag aagatgaagc tgctcggtaa catcgatgcc
     4741 ctcaagaagg agctgcagga aagaaagaag gagaaccagg agctgacgag cagcaagtgc
     4801 gacctctcct tgttgctgaa agaggctcag gacgccaaaa agaatctcga aaaagagcac
     4861 actagcatga tacaggcgaa ggataacttg aacgctgagc tgaagacctg ttgctgcgag
     4921 aagaacatgt tgctgaggga tggcctgaac ctgcaggaag agtgtcagaa gctaaacgag
     4981 gagattcggg aaatccagca gacgttaatc ctggagaagg aggccagggc caaggagagc
     5041 gagacctctt tgtacgagaa caacaagctc catgggagag tagtgctcct ggaggaagag
     5101 atacagaggc tgagggtgtg cagcgagcag ctccaaactg agaatttcac acttacccaa
     5161 gagaagacca actcagagca gaaggtggag gagatcatta aggaaaagga gctcctgagt
     5221 gcagagacgg ctcagctcgc ggccaacatc gagaccctca aaagcgactt cgctgccctt
     5281 tccaagtcca agttggaact gcaagaacta cacagctgcc tcaccaagat actggatgac
     5341 ctgcggctga accacgaggt ggccttgaca gagagggccg aggtgctcca ggacaacaag
     5401 aacctcctgg ctgagaaacg ggagatgatg ctgagaaacg aagaggcgct gaaggagaag
     5461 gagaagctgg aagagagcta cttcatcctt cagaaagaga ttagccagct ggcccagacc
     5521 aacagccaca tctcagccaa cctcctagag tcccaaagcg agaaccggac tctgaggaaa
     5581 gacaagagca agcttaccct taaaattaga gagcttgaga cccttcattc gttcacggct
     5641 gctcagactg cagaagacgc catgcagatc atggaacaga tgaccaaaga gaaaacagaa
     5701 acgctggcct ccttggagga caccaagcaa acaaatgcaa gactacagaa tgaattggac
     5761 acacttaagg aaaacaactt gaaaactgtg gaagagctga acaagtcaaa agaactgctg
     5821 agtgtagaga accaaaaaat ggaagaattc aagaaagaaa tagaaaccct aaagcaggca
     5881 gcagctcaga agtcccagca gctttcagca ctgcaggaag agaacgtcaa acttgccgag
     5941 gagctgggga gaacccggga cgaagtcaca agtcaccaga agctggaaga agaacgatct
     6001 gtactcaata atcagttgtt agaaatgaaa aagagcttgc ccagtaacac tttaagagaa
     6061 tctgagttca gaaaagacgc cgatgaagag aaagcctcct tgcagaagtc gatcagcctc
     6121 accagtgcct tgctcacaga gaaggacgcg gagctggaga agctgaggaa tgaggtcaca
     6181 gtgctcaggg gagagaatgc caccgccaag tccctgcact cagttgtgca gacactggag
     6241 tctgataagg tgaagcttga gctcaaggtc aaaaacttgg aacttcaact caaggagaac
     6301 aagaggcagc tcagcagctc ctcaggtaac actgatgctc aggcggaaga ggatgagaga
     6361 gcccaggaga gtcagcaaat gattgatttc ctcaactcgg taatagtgga tcttcaaaga
     6421 aagaaccaag acctcaagat gaaggtggag atgatgtctg aagctgcact caatggcaac
     6481 ggggaagacc tgaacagtta tgacagtgat gaccaggaaa agcagtccaa gaagaaaccc
     6541 cgcctcttct gtgacatctg tgactgcttt gacctccacg atacagagga ctgtcccacc
     6601 caggcacaga tgtcggaaga tcctccccat tccactcacc atggcagccg gagcgaggag
     6661 cggccatact gtgagatctg tgagatgttt gggcactggg caaccaactg caatgacgac
     6721 gagaccttct gaggaagccg ggagggcagg aagggcttcc ccgacaaacg ccggctcctc
     6781 agcagctccc gccagcattg gtgtgcaact tcagaagagc tccttatttt ttgacccctg
     6841 tcaacaaatc tgagaaaata ttttgatctt caacaagttt ccctttcatt tcccctcgta
     6901 agttaaaata ataataaata tttggtaggt gggcttgcac ttccgtcctt gttttctgga
     6961 tttttaaggt ttaagacatt gtaccaggca cagttcctgt ttgttcctag agaaaccctc
     7021 tgggacaagt gggaccctgg cagtatctta tttaggaaac ttcaaatgat gccgttgact
     7081 ctcatgtttg cactaaaatg tttcctggct acatctgtat atttaggttg ttgttgttgt
     7141 tgttatgctt tgacactgga atgagttgca aaaaaaccct gtgccacttt gtgatttcct
     7201 gcctcattta aatactctca tctctaaacc ccaagctctt ctcttcgcac tccctgctct
     7261 caggagggcc tttttccagg cttgacaata cttaggtgtg actataaatc atgaaaacag
     7321 gtaaaaggga ggggaaagcc cgaactgctg tggggacatt ttctaatcta tatgctgcac
     7381 ccatggaccg acagtggtgt tttctttact ggttttacat aatttcaacg tctatatatt
     7441 atatgtgtat atatttttaa aagaatctat attttgggaa aaagtctata caatgtgtct
     7501 tcttttcaga tttttttacc tttatgaaaa agaaaacatc taaaggctca ccagcatgtg
     7561 actgactggg cccaagatgg gctctgcggt ggtctctgct gtgaggttcc agctatcgtc
     7621 tttgtctcca tgatgtttct tagccagatc ggagtagctg gaagaacagt ctccggctcc
     7681 ttgcttgtgt ttcccttcct tagcagataa ccccagcagc aaactaagcc actcttcaga
     7741 gagctaagct aactgatcta caaccctcct ttatacattt gtggggtgtg tttgtttgtt
     7801 tgttttttac tgtattttta aatgaatgta tgatgagaaa ttcaacatga ataattttgg
     7861 attttcttat cacaaaaaag ataaaacaaa ggacctcaac caactgaaga gttgaccccg
     7921 ccagtctgcg tctctctgtc ttcacttgaa tgtctttgag aatatgtaaa aaggagccac
     7981 atgcacctcc acgcagtgtg caggacgaga acttccgtca ttgtatatag gcctctgccc
     8041 cgtctcccct taaggttatc cactgtgctt gatgagtgag cagtcaatac atctgctgcc
     8101 cgtcggcatt ctgggttaat aaaactatag gaattatttc acaaacaaac tatggaaagc
     8161 agtattaaaa tctgagttct gtatctactt taataaatgt tttgggtctc tttg
//
