LOCUS       XM_006530415            8274 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus CAP-GLY domain containing linker protein 1
            (Clip1), transcript variant X8, mRNA.
ACCESSION   XM_006530415
VERSION     XM_006530415.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006530415.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8274
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..8274
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 59 ESTs, 1196 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
     CDS             322..6792
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X7"
                     /protein_id="XP_006530478.1"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPVEKTIPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQAAPGRTASPLSTAAATMVSSSP
                     ATPSNIPHKPSQSTAKEPSATPQISNLTKTASESISNLSEAGSVKKGERELKVGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMAATPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISAL
                     QEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHAN
                     KENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQ
                     HEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEME
                     DTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGK
                     LELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQV
                     KETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLT
                     DMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL
                     QLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSY
                     NQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKT
                     QADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVE
                     TKITLLQEDQQKLWSVNETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKE
                     INAAQEELLKMHMENDSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVK
                     KLTAENLVLVKDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNT
                     CLTLKAERENLLQTNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLD
                     CASKALRKAELDMRQLQTSNSSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERTL
                     LAEKEELLSENRIITEKLSKQSEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQD
                     SLLKEKSALELQNGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKLLGNIDAL
                     KKELQERKKENQELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTCCC
                     EKNMLLRDGLNLQEECQKLNEEIREIQQTLILEKEARAKESETSLYENNKLHGRVVLL
                     EEEIQRLRVCSEQLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKS
                     DFAALSKSKLELQELHSCLTKILDDLRLNHEVALTERAEVLQDNKNLLAEKREMMLRN
                     EEALKEKEKLEESYFILQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRE
                     LETLHSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKT
                     VEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD
                     EVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKASLQKSISLTSALL
                     TEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQ
                     LSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNG
                     EDLNSYDSDDQEKQSKKKPRLFCDICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRSE
                     ERPYCEICEMFGHWATNCNDDETF"
ORIGIN      
        1 aggggcggca ggggagctcg cgggcggcag cggcccgggc acggggaggg gcggcgcggc
       61 gtcttctccc ggccccgcgg cggcggcggc agcgcgtcac gttctcttcc ccgccccgag
      121 ccgaagagcc ggggaggcgg gaggcggcgg ccgcggcggc tgctgctgct gctgctggga
      181 ggcaggtgac ggcgaccagc ggcgtcccag gcgatttgac cgagaggctg agttctctat
      241 aggaacaccc acatttgtat ggatgagtgg ggaaagatag cggcagcaga caaggaaaaa
      301 gcgtcctgac ctcccgagaa catgagtatg ctaaaaccca gcggcctgaa ggcccctacc
      361 aagatcctta agccgggaag cacagccttg aagacgcctg ctgctgctgc agctccagtg
      421 gagaagacaa tacccagtga gaaagcctcg ggccctccat cctccgagac ccaagaggag
      481 tttgtggatg actttcgagt tggagaacgt gtttgggtga acgggaataa gcccggattt
      541 atccagtttc ttggggaaac tcagttcgca ccaggccagt gggctgggat tgttttagat
      601 gaacccatag ggaagaacga tggctctgtg gcgggagtgc ggtatttcca gtgtgaacct
      661 ttaaagggca tattcacccg accttcaaag ctaacgagga aggtgcaggc agaagatgaa
      721 gccaacggcc tgcaggcagc tcctgggaga actgcttcac ctctgtccac tgctgcagct
      781 accatggtgt cttcttctcc agccactccc tcaaatattc cccacaaacc gtcccagtca
      841 acggcaaaag aaccttcggc tacacctcaa attagcaacc tcacaaaaac tgccagtgag
      901 tcgatctcca acctttcaga ggctggctct gtcaagaagg gggagcggga gctcaaggtc
      961 ggagacaggg tgctggttgg tggcactaag gctggcgtag tccgctttct tggcgagacc
     1021 gactttgcca agggggagtg gtgtggtgtg gagttagacg agcctttggg gaagaacgat
     1081 ggtgctgtgg ccggaacaag gtattttcag tgtcaaccca aatatggatt gttcgctcct
     1141 gtccacaaag tgacaaagat tggcttcccg tctactaccc cagccaaagc caaagccgcc
     1201 gctgtgaggc gagtgatggc cgccacgccc gccagcctga agcgaagccc ttctgcctcc
     1261 tccctcagct ccatgagctc cgtggcctcc tctgtgagca gcaaacccag ccggacagga
     1321 ctattgactg aaacctcctc ccgctacgcc cgcaagatct cgggcaccac tgccctccag
     1381 gaggcgctga aggagaagca gcagcacatt gagcagctgc tggctgagcg ggacctggag
     1441 cgggccgagg tggccaaggc taccagccac gtgggggaaa tagagcagga gctagccctg
     1501 gcccgagatg ggcatgacca gcatgtcctg gaactagagg ccaagatgga ccagctacgg
     1561 accatggtgg aagctgctga cagggagaaa gtggagctgc tcaaccagct ggaagaggag
     1621 aagaggaagg ttgaggacct tcagttccga gttgaagaag aatcaattac caaaggcgat
     1681 cttgaggtgg ctaccgtctc agaaaagtcc cgaataatgg aactagaaaa ggacctagca
     1741 ttgagagcac aggaagtagc tgagctccga agaaggctag agtccagtaa acctcctggg
     1801 gatgtggata tgtctctctc ccttttgcaa gaaataagtg ctttgcaaga aaagctagaa
     1861 gccatccata ctgaccacca gggcgagatg acttctttga aggaacactt cggagctcga
     1921 gaggaggcgt ttcagaagga gatcaaggct ctgcacacgg ccactgagaa gctttccaaa
     1981 gagaacgagt ccctgagaag caagctcgac cacgctaata aggagaactc cgatgtgata
     2041 gctctatgga agtccaaact ggagaccgcc atagcatccc accagcaggc aatggaggag
     2101 ctgaaggtgt cctttagcaa aggcattgga acggactccg ctgaatttgc tgagttaaag
     2161 acacagatag agagactgag actagattac cagcacgaaa tagaaagttt acagagtaaa
     2221 caggactctg agcggtctgc tcatgctaaa gagatggaga ccatgcaggc caagctgatg
     2281 aagatcatta aagagaagga ggacagcctg gaggccgtca aagcgagact ggacagtgca
     2341 gaagaccagc acctagtgga aatggaggac acgctaaaca aactgcagga ggcggagatt
     2401 aaggtaaagg agctagaggt tctgcaggcc aagtacactg aacaaagcga ggtcattggt
     2461 aattttacat cgcagctcag tgctgtcaaa gaaaagctct tggatcttga tgcgcttcgg
     2521 aaagccaatt ccgaaggtaa actggagctc gagacactta gacagcagct tgagggagct
     2581 gaaaagcaga ttaaaaactt agagactgaa aggaacgctg aaagtagcaa ggctaatagc
     2641 attaccaaag agctccagga gaaagagcta gtgctcactg gtctgcagga cagtttgaat
     2701 caagtcaatc aagtgaagga gactttggag aaagaacttc agactttgaa agaaaagttt
     2761 gccagtactt cagaggaggc ggtctctgct cagacaagga tgcaagatac cgtaaataaa
     2821 ctgcaccaaa aggaggaaca gtttaacgtg ttgtcgtctg aactggagaa gttgagagaa
     2881 aatttaacag acatggaggc aaaatttaaa gagaaggatg atcgagaaga tcagctggta
     2941 aaggcaaagg aaaaattaga aaacgacatt gcagaaataa tgaagatgtc aggagataac
     3001 tcttctcagc tgacaaagat gaatgatgaa ttacgtctga aggaaagatc cgtggaagaa
     3061 ctccagctca agcttacaaa ggccaatgaa aacgccagtt ttctgcagaa gagtattggc
     3121 gaagtgactc ttaaagctga gcagagtcag cagcaagcag ccagaaaaca tgaagaagaa
     3181 aagaaagagt tggaggaaaa actgttggaa ctggaaaaga agatggaaac aagctacaac
     3241 cagtgtcagg acctgaaagc taagtatgaa aaagccagtt ctgagactaa aacaaagcat
     3301 gaagaaatcc tgcagaacct ccagaagatg ctggcggaca cagaggataa gctgaaggct
     3361 gctcaggagg cgaacagaga tctgatgcag gacatggagg agctgaaaac acaggccgac
     3421 aaagccaaat cgctaactta tttgttaaca tcagccaaaa aagagattga agtgatgtca
     3481 gaagagctga ggggtctgaa atcagagaag cagctctatg cccaggaggc aaatgcttta
     3541 aagttagaga aaggttctct tttatcaaag ctgatagaag tggagaccaa gatcactttg
     3601 cttcaggaag accagcagaa actctggtcg gtaaacgaaa ccctccactt agaaaaggag
     3661 agagtctcgg aagagaagca ggtcgccgag aaacgctatc agcaggagca ccgggacagg
     3721 gagtccctag tggccgagag agagaaacta cttaaggaga tcaacgctgc ccaggaagaa
     3781 ctcctgaaga tgcacatgga gaacgactcc ctggaagcct ccaaggtgag catgcaggtg
     3841 ctcatcgagg agctccgctt ctgcaaggac aagctgatgg ccatgtcgga gaaggcgcgc
     3901 gccgagaaag agcacctgga gggccaggtc aagaagctca ccgccgagaa cttggtcctg
     3961 gtcaaagaca aggatgacgt catccagaag ctgcagagcg cctacgagga gctcgtcaag
     4021 gaccagaagg ctctggtgca agagatcgag gacctcacga ctgagaagaa gtcagctgcg
     4081 gagaagcaga tgagcctgga caacacctgc ctcaccctga aggccgagcg ggagaacctt
     4141 ctccagacca accgagacct gcagtttgag aaggacacgc tgcgccaggg ccaggagaag
     4201 ctgagcgcca gcctggaggc caccctgcag gtcaaacagc tgctcagcac ggaggcggag
     4261 accctgcgca cgcagctgga ctgtgccagc aaagcgctga ggaaggcgga gctggatatg
     4321 agacagctcc agacctcgaa ctccagcctc accaaactcc tggaagagat taagacctgc
     4381 cgcgccatca cggactccga gtgtatccag ctcctccacg agaaggagag cttggcggcc
     4441 tccgagcgga cgctcctggc agagaaggag gagctgctca gcgagaatag aatcatcacc
     4501 gagaaactca gcaaacaatc agaagaggtg gcccggctcg agatgggcct gaacgagaag
     4561 atcacgtact taacctccga gaaggaggtg gcctgccaga aagtcgccaa gctgaaaaag
     4621 cagcaggata gtctcctgaa ggagaagtcg gccctggagc tgcagaacgg agatctgctc
     4681 gctgacaggg aaagttctat caagaccata ggggatctga gaaggaagta tgaccaagag
     4741 gctacaaaca ggcggattgt tatgcaggag aagatgaagc tgctcggtaa catcgatgcc
     4801 ctcaagaagg agctgcagga aagaaagaag gagaaccagg agctgacgag cagcaagtgc
     4861 gacctctcct tgttgctgaa agaggctcag gacgccaaaa agaatctcga aaaagagcac
     4921 actagcatga tacaggcgaa ggataacttg aacgctgagc tgaagacctg ttgctgcgag
     4981 aagaacatgt tgctgaggga tggcctgaac ctgcaggaag agtgtcagaa gctaaacgag
     5041 gagattcggg aaatccagca gacgttaatc ctggagaagg aggccagggc caaggagagc
     5101 gagacctctt tgtacgagaa caacaagctc catgggagag tagtgctcct ggaggaagag
     5161 atacagaggc tgagggtgtg cagcgagcag ctccaaactg agaatttcac acttacccaa
     5221 gagaagacca actcagagca gaaggtggag gagatcatta aggaaaagga gctcctgagt
     5281 gcagagacgg ctcagctcgc ggccaacatc gagaccctca aaagcgactt cgctgccctt
     5341 tccaagtcca agttggaact gcaagaacta cacagctgcc tcaccaagat actggatgac
     5401 ctgcggctga accacgaggt ggccttgaca gagagggccg aggtgctcca ggacaacaag
     5461 aacctcctgg ctgagaaacg ggagatgatg ctgagaaacg aagaggcgct gaaggagaag
     5521 gagaagctgg aagagagcta cttcatcctt cagaaagaga ttagccagct ggcccagacc
     5581 aacagccaca tctcagccaa cctcctagag tcccaaagcg agaaccggac tctgaggaaa
     5641 gacaagagca agcttaccct taaaattaga gagcttgaga cccttcattc gttcacggct
     5701 gctcagactg cagaagacgc catgcagatc atggaacaga tgaccaaaga gaaaacagaa
     5761 acgctggcct ccttggagga caccaagcaa acaaatgcaa gactacagaa tgaattggac
     5821 acacttaagg aaaacaactt gaaaactgtg gaagagctga acaagtcaaa agaactgctg
     5881 agtgtagaga accaaaaaat ggaagaattc aagaaagaaa tagaaaccct aaagcaggca
     5941 gcagctcaga agtcccagca gctttcagca ctgcaggaag agaacgtcaa acttgccgag
     6001 gagctgggga gaacccggga cgaagtcaca agtcaccaga agctggaaga agaacgatct
     6061 gtactcaata atcagttgtt agaaatgaaa aagagcttgc ccagtaacac tttaagagaa
     6121 tctgagttca gaaaagacgc cgatgaagag aaagcctcct tgcagaagtc gatcagcctc
     6181 accagtgcct tgctcacaga gaaggacgcg gagctggaga agctgaggaa tgaggtcaca
     6241 gtgctcaggg gagagaatgc caccgccaag tccctgcact cagttgtgca gacactggag
     6301 tctgataagg tgaagcttga gctcaaggtc aaaaacttgg aacttcaact caaggagaac
     6361 aagaggcagc tcagcagctc ctcaggtaac actgatgctc aggcggaaga ggatgagaga
     6421 gcccaggaga gtcagcaaat gattgatttc ctcaactcgg taatagtgga tcttcaaaga
     6481 aagaaccaag acctcaagat gaaggtggag atgatgtctg aagctgcact caatggcaac
     6541 ggggaagacc tgaacagtta tgacagtgat gaccaggaaa agcagtccaa gaagaaaccc
     6601 cgcctcttct gtgacatctg tgactgcttt gacctccacg atacagagga ctgtcccacc
     6661 caggcacaga tgtcggaaga tcctccccat tccactcacc atggcagccg gagcgaggag
     6721 cggccatact gtgagatctg tgagatgttt gggcactggg caaccaactg caatgacgac
     6781 gagaccttct gaggaagccg ggagggcagg aagggcttcc ccgacaaacg ccggctcctc
     6841 agcagctccc gccagcattg gtgtgcaact tcagaagagc tccttatttt ttgacccctg
     6901 tcaacaaatc tgagaaaata ttttgatctt caacaagttt ccctttcatt tcccctcgta
     6961 agttaaaata ataataaata tttggtaggt gggcttgcac ttccgtcctt gttttctgga
     7021 tttttaaggt ttaagacatt gtaccaggca cagttcctgt ttgttcctag agaaaccctc
     7081 tgggacaagt gggaccctgg cagtatctta tttaggaaac ttcaaatgat gccgttgact
     7141 ctcatgtttg cactaaaatg tttcctggct acatctgtat atttaggttg ttgttgttgt
     7201 tgttatgctt tgacactgga atgagttgca aaaaaaccct gtgccacttt gtgatttcct
     7261 gcctcattta aatactctca tctctaaacc ccaagctctt ctcttcgcac tccctgctct
     7321 caggagggcc tttttccagg cttgacaata cttaggtgtg actataaatc atgaaaacag
     7381 gtaaaaggga ggggaaagcc cgaactgctg tggggacatt ttctaatcta tatgctgcac
     7441 ccatggaccg acagtggtgt tttctttact ggttttacat aatttcaacg tctatatatt
     7501 atatgtgtat atatttttaa aagaatctat attttgggaa aaagtctata caatgtgtct
     7561 tcttttcaga tttttttacc tttatgaaaa agaaaacatc taaaggctca ccagcatgtg
     7621 actgactggg cccaagatgg gctctgcggt ggtctctgct gtgaggttcc agctatcgtc
     7681 tttgtctcca tgatgtttct tagccagatc ggagtagctg gaagaacagt ctccggctcc
     7741 ttgcttgtgt ttcccttcct tagcagataa ccccagcagc aaactaagcc actcttcaga
     7801 gagctaagct aactgatcta caaccctcct ttatacattt gtggggtgtg tttgtttgtt
     7861 tgttttttac tgtattttta aatgaatgta tgatgagaaa ttcaacatga ataattttgg
     7921 attttcttat cacaaaaaag ataaaacaaa ggacctcaac caactgaaga gttgaccccg
     7981 ccagtctgcg tctctctgtc ttcacttgaa tgtctttgag aatatgtaaa aaggagccac
     8041 atgcacctcc acgcagtgtg caggacgaga acttccgtca ttgtatatag gcctctgccc
     8101 cgtctcccct taaggttatc cactgtgctt gatgagtgag cagtcaatac atctgctgcc
     8161 cgtcggcatt ctgggttaat aaaactatag gaattatttc acaaacaaac tatggaaagc
     8221 agtattaaaa tctgagttct gtatctactt taataaatgt tttgggtctc tttg
//
