LOCUS       XM_006530411            8385 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus CAP-GLY domain containing linker protein 1
            (Clip1), transcript variant X5, mRNA.
ACCESSION   XM_006530411
VERSION     XM_006530411.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006530411.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8385
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..8385
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 62 ESTs, 1347 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 16 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
     CDS             322..6903
                     /gene="Clip1"
                     /gene_synonym="1110007I12Rik; 4631429H07Rik; CLIP-170;
                     CLIP170; Clip50; CYLN1; mKIAA4046; restin; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X4"
                     /protein_id="XP_006530474.1"
                     /db_xref="GeneID:56430"
                     /db_xref="MGI:MGI:1928401"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPVEKTIPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQAAPGRTASPLSTAAATMVSSSP
                     ATPSNIPHKPSQSTAKEPSATPQISNLTKTASESISNLSEAGSVKKGERELKVGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMAATPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEK
                     SRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQ
                     GEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKS
                     KLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDS
                     ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIK
                     VKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEG
                     AEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLK
                     EKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR
                     EDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS
                     FLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEK
                     ASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKSLTYLL
                     TSAKKEIEVMSEELRGLKSEKQLYAQEANALKLEKGSLLSKLIEVETKITLLQEDQQK
                     LWSVNETLHLEKERVSEEKQVAEKRYQQEHRDRESLVAEREKLLKEINAAQEELLKMH
                     MENDSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEHLEGQVKKLTAENLVLVKD
                     KDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMSLDNTCLTLKAERENLL
                     QTNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCASKALRKAELD
                     MRQLQTSNSSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERTLLAEKEELLSENR
                     IITEKLSKQSEEVARLEMGLNEKITYLTSEKEVACQKVAKLKKQQDSLLKEKSALELQ
                     NGDLLADRESSIKTIGDLRRKYDQEATNRRIVMQEKMKLLGNIDALKKELQERKKENQ
                     ELTSSKCDLSLLLKEAQDAKKNLEKEHTSMIQAKDNLNAELKTCCCEKNMLLRDGLNL
                     QEECQKLNEEIREIQQTLILEKEARAKESETSLYENNKLHGRVVLLEEEIQRLRVCSE
                     QLQTENFTLTQEKTNSEQKVEEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLEL
                     QELHSCLTKILDDLRLNHEVALTERAEVLQDNKNLLAEKREMMLRNEEALKEKEKLEE
                     SYFILQKEISQLAQTNSHISANLLESQSENRTLRKDKSKLTLKIRELETLHSFTAAQT
                     AEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLS
                     VENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEER
                     SVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRG
                     ENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQ
                     ESQIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKKPRL
                     FCDICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRSEERPYCEICEMFGHWATNCNDD
                     ETF"
ORIGIN      
        1 aggggcggca ggggagctcg cgggcggcag cggcccgggc acggggaggg gcggcgcggc
       61 gtcttctccc ggccccgcgg cggcggcggc agcgcgtcac gttctcttcc ccgccccgag
      121 ccgaagagcc ggggaggcgg gaggcggcgg ccgcggcggc tgctgctgct gctgctggga
      181 ggcaggtgac ggcgaccagc ggcgtcccag gcgatttgac cgagaggctg agttctctat
      241 aggaacaccc acatttgtat ggatgagtgg ggaaagatag cggcagcaga caaggaaaaa
      301 gcgtcctgac ctcccgagaa catgagtatg ctaaaaccca gcggcctgaa ggcccctacc
      361 aagatcctta agccgggaag cacagccttg aagacgcctg ctgctgctgc agctccagtg
      421 gagaagacaa tacccagtga gaaagcctcg ggccctccat cctccgagac ccaagaggag
      481 tttgtggatg actttcgagt tggagaacgt gtttgggtga acgggaataa gcccggattt
      541 atccagtttc ttggggaaac tcagttcgca ccaggccagt gggctgggat tgttttagat
      601 gaacccatag ggaagaacga tggctctgtg gcgggagtgc ggtatttcca gtgtgaacct
      661 ttaaagggca tattcacccg accttcaaag ctaacgagga aggtgcaggc agaagatgaa
      721 gccaacggcc tgcaggcagc tcctgggaga actgcttcac ctctgtccac tgctgcagct
      781 accatggtgt cttcttctcc agccactccc tcaaatattc cccacaaacc gtcccagtca
      841 acggcaaaag aaccttcggc tacacctcaa attagcaacc tcacaaaaac tgccagtgag
      901 tcgatctcca acctttcaga ggctggctct gtcaagaagg gggagcggga gctcaaggtc
      961 ggagacaggg tgctggttgg tggcactaag gctggcgtag tccgctttct tggcgagacc
     1021 gactttgcca agggggagtg gtgtggtgtg gagttagacg agcctttggg gaagaacgat
     1081 ggtgctgtgg ccggaacaag gtattttcag tgtcaaccca aatatggatt gttcgctcct
     1141 gtccacaaag tgacaaagat tggcttcccg tctactaccc cagccaaagc caaagccgcc
     1201 gctgtgaggc gagtgatggc cgccacgccc gccagcctga agcgaagccc ttctgcctcc
     1261 tccctcagct ccatgagctc cgtggcctcc tctgtgagca gcaaacccag ccggacagga
     1321 ctattgactg aaacctcctc ccgctacgcc cgcaagatct cgggcaccac tgccctccag
     1381 gaggcgctga aggagaagca gcagcacatt gagcagctgc tggctgagcg ggacctggag
     1441 cgggccgagg tggccaaggc taccagccac gtgggggaaa tagagcagga gctagccctg
     1501 gcccgagatg ggcatgacca gcatgtcctg gaactagagg ccaagatgga ccagctacgg
     1561 accatggtgg aagctgctga cagggagaaa gtggagctgc tcaaccagct ggaagaggag
     1621 aagaggaagg ttgaggacct tcagttccga gttgaagaag aatcaattac caaaggcgat
     1681 cttgagcaaa agagcccgat ttctgaagat cccgagaata cgcagaccaa actggagcat
     1741 gcccgcacta aggagcttga acagagcctg ctctttgaaa agaccaaagc tgacaaactc
     1801 cagagggagt tagaagacac tagggtggct accgtctcag aaaagtcccg aataatggaa
     1861 ctagaaaagg acctagcatt gagagcacag gaagtagctg agctccgaag aaggctagag
     1921 tccagtaaac ctcctgggga tgtggatatg tctctctccc ttttgcaaga aataagtgct
     1981 ttgcaagaaa agctagaagc catccatact gaccaccagg gcgagatgac ttctttgaag
     2041 gaacacttcg gagctcgaga ggaggcgttt cagaaggaga tcaaggctct gcacacggcc
     2101 actgagaagc tttccaaaga gaacgagtcc ctgagaagca agctcgacca cgctaataag
     2161 gagaactccg atgtgatagc tctatggaag tccaaactgg agaccgccat agcatcccac
     2221 cagcaggcaa tggaggagct gaaggtgtcc tttagcaaag gcattggaac ggactccgct
     2281 gaatttgctg agttaaagac acagatagag agactgagac tagattacca gcacgaaata
     2341 gaaagtttac agagtaaaca ggactctgag cggtctgctc atgctaaaga gatggagacc
     2401 atgcaggcca agctgatgaa gatcattaaa gagaaggagg acagcctgga ggccgtcaaa
     2461 gcgagactgg acagtgcaga agaccagcac ctagtggaaa tggaggacac gctaaacaaa
     2521 ctgcaggagg cggagattaa ggtaaaggag ctagaggttc tgcaggccaa gtacactgaa
     2581 caaagcgagg tcattggtaa ttttacatcg cagctcagtg ctgtcaaaga aaagctcttg
     2641 gatcttgatg cgcttcggaa agccaattcc gaaggtaaac tggagctcga gacacttaga
     2701 cagcagcttg agggagctga aaagcagatt aaaaacttag agactgaaag gaacgctgaa
     2761 agtagcaagg ctaatagcat taccaaagag ctccaggaga aagagctagt gctcactggt
     2821 ctgcaggaca gtttgaatca agtcaatcaa gtgaaggaga ctttggagaa agaacttcag
     2881 actttgaaag aaaagtttgc cagtacttca gaggaggcgg tctctgctca gacaaggatg
     2941 caagataccg taaataaact gcaccaaaag gaggaacagt ttaacgtgtt gtcgtctgaa
     3001 ctggagaagt tgagagaaaa tttaacagac atggaggcaa aatttaaaga gaaggatgat
     3061 cgagaagatc agctggtaaa ggcaaaggaa aaattagaaa acgacattgc agaaataatg
     3121 aagatgtcag gagataactc ttctcagctg acaaagatga atgatgaatt acgtctgaag
     3181 gaaagatccg tggaagaact ccagctcaag cttacaaagg ccaatgaaaa cgccagtttt
     3241 ctgcagaaga gtattggcga agtgactctt aaagctgagc agagtcagca gcaagcagcc
     3301 agaaaacatg aagaagaaaa gaaagagttg gaggaaaaac tgttggaact ggaaaagaag
     3361 atggaaacaa gctacaacca gtgtcaggac ctgaaagcta agtatgaaaa agccagttct
     3421 gagactaaaa caaagcatga agaaatcctg cagaacctcc agaagatgct ggcggacaca
     3481 gaggataagc tgaaggctgc tcaggaggcg aacagagatc tgatgcagga catggaggag
     3541 ctgaaaacac aggccgacaa agccaaatcg ctaacttatt tgttaacatc agccaaaaaa
     3601 gagattgaag tgatgtcaga agagctgagg ggtctgaaat cagagaagca gctctatgcc
     3661 caggaggcaa atgctttaaa gttagagaaa ggttctcttt tatcaaagct gatagaagtg
     3721 gagaccaaga tcactttgct tcaggaagac cagcagaaac tctggtcggt aaacgaaacc
     3781 ctccacttag aaaaggagag agtctcggaa gagaagcagg tcgccgagaa acgctatcag
     3841 caggagcacc gggacaggga gtccctagtg gccgagagag agaaactact taaggagatc
     3901 aacgctgccc aggaagaact cctgaagatg cacatggaga acgactccct ggaagcctcc
     3961 aaggtgagca tgcaggtgct catcgaggag ctccgcttct gcaaggacaa gctgatggcc
     4021 atgtcggaga aggcgcgcgc cgagaaagag cacctggagg gccaggtcaa gaagctcacc
     4081 gccgagaact tggtcctggt caaagacaag gatgacgtca tccagaagct gcagagcgcc
     4141 tacgaggagc tcgtcaagga ccagaaggct ctggtgcaag agatcgagga cctcacgact
     4201 gagaagaagt cagctgcgga gaagcagatg agcctggaca acacctgcct caccctgaag
     4261 gccgagcggg agaaccttct ccagaccaac cgagacctgc agtttgagaa ggacacgctg
     4321 cgccagggcc aggagaagct gagcgccagc ctggaggcca ccctgcaggt caaacagctg
     4381 ctcagcacgg aggcggagac cctgcgcacg cagctggact gtgccagcaa agcgctgagg
     4441 aaggcggagc tggatatgag acagctccag acctcgaact ccagcctcac caaactcctg
     4501 gaagagatta agacctgccg cgccatcacg gactccgagt gtatccagct cctccacgag
     4561 aaggagagct tggcggcctc cgagcggacg ctcctggcag agaaggagga gctgctcagc
     4621 gagaatagaa tcatcaccga gaaactcagc aaacaatcag aagaggtggc ccggctcgag
     4681 atgggcctga acgagaagat cacgtactta acctccgaga aggaggtggc ctgccagaaa
     4741 gtcgccaagc tgaaaaagca gcaggatagt ctcctgaagg agaagtcggc cctggagctg
     4801 cagaacggag atctgctcgc tgacagggaa agttctatca agaccatagg ggatctgaga
     4861 aggaagtatg accaagaggc tacaaacagg cggattgtta tgcaggagaa gatgaagctg
     4921 ctcggtaaca tcgatgccct caagaaggag ctgcaggaaa gaaagaagga gaaccaggag
     4981 ctgacgagca gcaagtgcga cctctccttg ttgctgaaag aggctcagga cgccaaaaag
     5041 aatctcgaaa aagagcacac tagcatgata caggcgaagg ataacttgaa cgctgagctg
     5101 aagacctgtt gctgcgagaa gaacatgttg ctgagggatg gcctgaacct gcaggaagag
     5161 tgtcagaagc taaacgagga gattcgggaa atccagcaga cgttaatcct ggagaaggag
     5221 gccagggcca aggagagcga gacctctttg tacgagaaca acaagctcca tgggagagta
     5281 gtgctcctgg aggaagagat acagaggctg agggtgtgca gcgagcagct ccaaactgag
     5341 aatttcacac ttacccaaga gaagaccaac tcagagcaga aggtggagga gatcattaag
     5401 gaaaaggagc tcctgagtgc agagacggct cagctcgcgg ccaacatcga gaccctcaaa
     5461 agcgacttcg ctgccctttc caagtccaag ttggaactgc aagaactaca cagctgcctc
     5521 accaagatac tggatgacct gcggctgaac cacgaggtgg ccttgacaga gagggccgag
     5581 gtgctccagg acaacaagaa cctcctggct gagaaacggg agatgatgct gagaaacgaa
     5641 gaggcgctga aggagaagga gaagctggaa gagagctact tcatccttca gaaagagatt
     5701 agccagctgg cccagaccaa cagccacatc tcagccaacc tcctagagtc ccaaagcgag
     5761 aaccggactc tgaggaaaga caagagcaag cttaccctta aaattagaga gcttgagacc
     5821 cttcattcgt tcacggctgc tcagactgca gaagacgcca tgcagatcat ggaacagatg
     5881 accaaagaga aaacagaaac gctggcctcc ttggaggaca ccaagcaaac aaatgcaaga
     5941 ctacagaatg aattggacac acttaaggaa aacaacttga aaactgtgga agagctgaac
     6001 aagtcaaaag aactgctgag tgtagagaac caaaaaatgg aagaattcaa gaaagaaata
     6061 gaaaccctaa agcaggcagc agctcagaag tcccagcagc tttcagcact gcaggaagag
     6121 aacgtcaaac ttgccgagga gctggggaga acccgggacg aagtcacaag tcaccagaag
     6181 ctggaagaag aacgatctgt actcaataat cagttgttag aaatgaaaaa gagagaatct
     6241 gagttcagaa aagacgccga tgaagagaaa gcctccttgc agaagtcgat cagcctcacc
     6301 agtgccttgc tcacagagaa ggacgcggag ctggagaagc tgaggaatga ggtcacagtg
     6361 ctcaggggag agaatgccac cgccaagtcc ctgcactcag ttgtgcagac actggagtct
     6421 gataaggtga agcttgagct caaggtcaaa aacttggaac ttcaactcaa ggagaacaag
     6481 aggcagctca gcagctcctc aggtaacact gatgctcagg cggaagagga tgagagagcc
     6541 caggagagtc agattgattt cctcaactcg gtaatagtgg atcttcaaag aaagaaccaa
     6601 gacctcaaga tgaaggtgga gatgatgtct gaagctgcac tcaatggcaa cggggaagac
     6661 ctgaacagtt atgacagtga tgaccaggaa aagcagtcca agaagaaacc ccgcctcttc
     6721 tgtgacatct gtgactgctt tgacctccac gatacagagg actgtcccac ccaggcacag
     6781 atgtcggaag atcctcccca ttccactcac catggcagcc ggagcgagga gcggccatac
     6841 tgtgagatct gtgagatgtt tgggcactgg gcaaccaact gcaatgacga cgagaccttc
     6901 tgaggaagcc gggagggcag gaagggcttc cccgacaaac gccggctcct cagcagctcc
     6961 cgccagcatt ggtgtgcaac ttcagaagag ctccttattt tttgacccct gtcaacaaat
     7021 ctgagaaaat attttgatct tcaacaagtt tccctttcat ttcccctcgt aagttaaaat
     7081 aataataaat atttggtagg tgggcttgca cttccgtcct tgttttctgg atttttaagg
     7141 tttaagacat tgtaccaggc acagttcctg tttgttccta gagaaaccct ctgggacaag
     7201 tgggaccctg gcagtatctt atttaggaaa cttcaaatga tgccgttgac tctcatgttt
     7261 gcactaaaat gtttcctggc tacatctgta tatttaggtt gttgttgttg ttgttatgct
     7321 ttgacactgg aatgagttgc aaaaaaaccc tgtgccactt tgtgatttcc tgcctcattt
     7381 aaatactctc atctctaaac cccaagctct tctcttcgca ctccctgctc tcaggagggc
     7441 ctttttccag gcttgacaat acttaggtgt gactataaat catgaaaaca ggtaaaaggg
     7501 aggggaaagc ccgaactgct gtggggacat tttctaatct atatgctgca cccatggacc
     7561 gacagtggtg ttttctttac tggttttaca taatttcaac gtctatatat tatatgtgta
     7621 tatattttta aaagaatcta tattttggga aaaagtctat acaatgtgtc ttcttttcag
     7681 atttttttac ctttatgaaa aagaaaacat ctaaaggctc accagcatgt gactgactgg
     7741 gcccaagatg ggctctgcgg tggtctctgc tgtgaggttc cagctatcgt ctttgtctcc
     7801 atgatgtttc ttagccagat cggagtagct ggaagaacag tctccggctc cttgcttgtg
     7861 tttcccttcc ttagcagata accccagcag caaactaagc cactcttcag agagctaagc
     7921 taactgatct acaaccctcc tttatacatt tgtggggtgt gtttgtttgt ttgtttttta
     7981 ctgtattttt aaatgaatgt atgatgagaa attcaacatg aataattttg gattttctta
     8041 tcacaaaaaa gataaaacaa aggacctcaa ccaactgaag agttgacccc gccagtctgc
     8101 gtctctctgt cttcacttga atgtctttga gaatatgtaa aaaggagcca catgcacctc
     8161 cacgcagtgt gcaggacgag aacttccgtc attgtatata ggcctctgcc ccgtctcccc
     8221 ttaaggttat ccactgtgct tgatgagtga gcagtcaata catctgctgc ccgtcggcat
     8281 tctgggttaa taaaactata ggaattattt cacaaacaaa ctatggaaag cagtattaaa
     8341 atctgagttc tgtatctact ttaataaatg ttttgggtct ctttg
//
