LOCUS       NM_028504               2185 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus clathrin heavy chain linker domain containing 1
            (Clhc1), transcript variant 1, mRNA.
ACCESSION   NM_028504 XM_125968 XM_901828 XM_904868 XM_919028
VERSION     NM_028504.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2185)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX284634.8 and AK006591.1.
            
            On or before Jul 24, 2009 this sequence version replaced
            XM_904868.2, XM_919028.2, XM_125968.3, XM_901828.2.
            
            Transcript Variant: This variant (1) represents the longer variant
            and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK006591.1, BC137683.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-16                BX284634.8         123120-123135
            17-625              AK006591.1         18-626
            626-626             BX284634.8         131381-131381
            627-2120            AK006591.1         628-2121
            2121-2185           BX284634.8         153458-153522
FEATURES             Location/Qualifiers
     source          1..2185
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 16.79 cM"
     gene            1..2185
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /note="clathrin heavy chain linker domain containing 1"
                     /db_xref="GeneID:73324"
                     /db_xref="MGI:MGI:1920574"
     exon            1..191
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            192..450
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            451..671
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            672..805
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            806..1007
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1008..1120
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1205
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1206..1312
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1313..1487
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1488..1690
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1691..1870
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1871..2185
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2148..2153
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2166
                     /gene="Clhc1"
                     /gene_synonym="1700034F02Rik"
                     /note="major polyA site"
ORIGIN      
        1 cgcggctgtc taacgcagtg ccagatttgc tcgttcgctc ggtttcttta cgctcttttc
       61 tcggtttacc tcagaatggc ctcgaaatga tgtgctcaac taaaaaaaat gcctcaaaag
      121 gctttcttat acagccgatg cgattaagag aggctttcct ttaaaggggg cttgtgaaac
      181 ataagagaga ggctcactaa agctttggct ttatggcaaa agaaggtcaa ggtttaattt
      241 ttctccggtg aacaagctta cagattaaga tttatgtccg tccaagaagt aaacacacat
      301 gcagttctcc ctcctatcgt tagtagaaat gacaaggagt ttttggaaag catacaaaga
      361 tacataacta cagaaaccaa aagagtgggt tgcaaagagg aaggacctgc tgatgaatat
      421 tacaccatat accgaaacgt tttcgacaag ttcagtgcca cagacagaaa aatcatattt
      481 caggtaatag actatgtcag tgcatacaag tccattctta ctgcaatcaa aaaagaatat
      541 gacgccttta ttgagacaat aaagaaaggc cgaagaactg ctttttatct tcatggaaaa
      601 cttaaagttt tggcaaaaga gcctacagca ttggtgtatc accagagaag agcaatccaa
      661 ctcgaagcaa aaatgaggat tattgaaaat aattccacag caattcaatt gcaaatagat
      721 cagatgaagc agctgagaat ggagtatgac aagaaagaag taaagctctg tgctccctcc
      781 agacagcttt ggaaacctat cccagggatg actctccagg actccgttaa tctggaagca
      841 ctcaataaac ataagcagta tcttgaagat aaatatataa aacttaaaca agacatgtca
      901 acgatgtatg taccagccca aaagaaagct gaactagatg aggaaatggt tgtgttacta
      961 aaccggagag atatagctga aaatctgaaa aaagaccggc agtttcgcca tcaaagactg
     1021 caggttattt cacacacact tactccatgg atgaagcaga acatgagaat ctcatttcaa
     1081 gatgtcatgg agagaattcg gaaaaccaaa gctatctacg gctatgacaa cattgttgat
     1141 gagatatttg aagatgaccc aaacaagaaa aaagaagcta tagttatgct tcactacatt
     1201 gaaaggttca atgacttaat ctcccttggt gaatatgaga gggcagcttg tttcgcagca
     1261 aacagtccaa aaagaattct tcaaaatact agtacaatga ataaatttaa ggctattgga
     1321 aaaattagag gaaagcctct tccattactc ttgttttttg aggctatatt taacaccagt
     1381 caagctttca aacgtcctat taatgctgac ctaaccatgg agggaatcaa atgtggatta
     1441 tctgaggaac ggcttgattt agtcacccac tgggttaccc aggaaaagct gacattttct
     1501 gagaaggctg gcgatattat atttgcttat ggagagcagc acacatacca caagcccaga
     1561 tgtttggcgt tagctcagat tatctacaat gagtgtgggc tgcacaggaa agctcttctt
     1621 tgcctgtgta aacagggtca gattcatgag gctatggaac atatacaaca gtccaaggac
     1681 attaacactg atgacctgat acaactaata acagcatgtc cccagattga cttaattaga
     1741 tgtcttactc aagaaaggaa tgagaaacca ccatttttat cttttgggct tgctgtactc
     1801 catatgtttt ctgtggatat gaaaaaagtt ggcatgaggc tacttcaaga agtcagtaaa
     1861 ggcgagaaag atgtgattga gcatcttgtg atgagtgatt tattttgctc cttagaaaag
     1921 tggcaagaaa tagcaaatat ctgtttgcag aatggtttta aaattttgtt taatgacatc
     1981 atgtccattc ttcgatccca ggctggagtt tcagaaattt ctgaagatga taccaccaac
     2041 ataatggaac atgttttttg gtagttctgt attttaaccc ctgagggcgc ttgttcaaca
     2101 ttttacaggc attagctggg gaagctggtt ttagcataat taatataaat aaatgttgag
     2161 tataaagctc tcagcagtaa atcac
//
