LOCUS       NM_011606               1009 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus C-type lectin domain family 3, member b (Clec3b),
            mRNA.
ACCESSION   NM_011606 XM_986264
VERSION     NM_011606.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1009)
  AUTHORS   Hanaka,M., Iba,K., Hayakawa,H., Kiyomoto,K., Ibe,K., Teramoto,A.,
            Emori,M. and Yamashita,T.
  TITLE     Delayed tendon healing after injury in tetranectin-deficient mice
  JOURNAL   J Orthop Sci 27 (1), 257-265 (2022)
   PUBMED   33451873
  REMARK    GeneRIF: Delayed tendon healing after injury in
            tetranectin-deficient mice.
REFERENCE   3  (bases 1 to 1009)
  AUTHORS   Holmes,G., Gonzalez-Reiche,A.S., Saturne,M., Motch Perrine,S.M.,
            Zhou,X., Borges,A.C., Shewale,B., Richtsmeier,J.T., Zhang,B., van
            Bakel,H. and Jabs,E.W.
  TITLE     Single-cell analysis identifies a key role for Hhip in murine
            coronal suture development
  JOURNAL   Nat Commun 12 (1), 7132 (2021)
   PUBMED   34880220
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1009)
  AUTHORS   Holmes,G., Gonzalez-Reiche,A.S., Lu,N., Zhou,X., Rivera,J.,
            Kriti,D., Sebra,R., Williams,A.A., Donovan,M.J., Potter,S.S.,
            Pinto,D., Zhang,B., van Bakel,H. and Jabs,E.W.
  TITLE     Integrated Transcriptome and Network Analysis Reveals
            Spatiotemporal Dynamics of Calvarial Suturogenesis
  JOURNAL   Cell Rep 32 (1), 107871 (2020)
   PUBMED   32640236
REFERENCE   5  (bases 1 to 1009)
  AUTHORS   Park,J., Ryu,D.Y., Rahman,S. and Kim,J.
  TITLE     Adipogenic function of mouse tetranectin and identification of its
            functional domain
  JOURNAL   Biochem Biophys Res Commun 519 (3), 645-651 (2019)
   PUBMED   31540696
  REMARK    GeneRIF: This study demonstrates the adipogenic function of
            Tetranectin, which is dependent on the plasminogen binding domain
            as its functional domain.
REFERENCE   6  (bases 1 to 1009)
  AUTHORS   Kozak,C.A. and Sangameswaran,L.
  TITLE     Genetic mapping of the peripheral sodium channel genes, Scn9a and
            Scn10a, in the mouse
  JOURNAL   Mamm Genome 7 (10), 787-788 (1996)
   PUBMED   8854872
REFERENCE   7  (bases 1 to 1009)
  AUTHORS   Ibaraki,K., Kozak,C.A., Wewer,U.M., Albrechtsen,R. and Young,M.F.
  TITLE     Mouse tetranectin: cDNA sequence, tissue-specific expression, and
            chromosomal mapping
  JOURNAL   Mamm Genome 6 (10), 693-696 (1995)
   PUBMED   8563165
REFERENCE   8  (bases 1 to 1009)
  AUTHORS   Sorensen,C.B., Berglund,L. and Petersen,T.E.
  TITLE     Cloning of a cDNA encoding murine tetranectin
  JOURNAL   Gene 152 (2), 243-245 (1995)
   PUBMED   7835708
REFERENCE   9  (bases 1 to 1009)
  AUTHORS   Selbert,S., Fischer,P., Pongratz,D., Stewart,M. and Noegel,A.A.
  TITLE     Expression and localization of annexin VII (synexin) in muscle
            cells
  JOURNAL   J Cell Sci 108 (Pt 1), 85-95 (1995)
   PUBMED   7738119
REFERENCE   10 (bases 1 to 1009)
  AUTHORS   Wewer,U.M., Ibaraki,K., Schjorring,P., Durkin,M.E., Young,M.F. and
            Albrechtsen,R.
  TITLE     A potential role for tetranectin in mineralization during
            osteogenesis
  JOURNAL   J Cell Biol 127 (6 Pt 1), 1767-1775 (1994)
   PUBMED   7798325
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY114395.1 and BC035043.1.
            
            On Mar 28, 2008 this sequence version replaced NM_011606.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X79199.1, U08595.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                BY114395.1         1-48
            49-1009             BC035043.1         1-961
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 73.91 cM"
     gene            1..1009
                     /gene="Clec3b"
                     /gene_synonym="Tna"
                     /note="C-type lectin domain family 3, member b"
                     /db_xref="GeneID:21922"
                     /db_xref="MGI:MGI:104540"
     exon            1..207
                     /gene="Clec3b"
                     /gene_synonym="Tna"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..707
                     /gene="Clec3b"
                     /gene_synonym="Tna"
                     /note="tetranectin (plasminogen binding protein); TN;
                     plasminogen kringle 4-binding protein"
                     /codon_start=1
                     /product="tetranectin precursor"
                     /protein_id="NP_035736.2"
                     /db_xref="CCDS:CCDS23656.1"
                     /db_xref="GeneID:21922"
                     /db_xref="MGI:MGI:104540"
                     /translation="MGFWGTYLLFCLFSFLSQVIAESPTPKAKKAANAKKDLVSSKMF
                     EELKNRMDVLAQEVALLKEKQALQTVCLKGTKVNLKCLLAFTQPKTFHEASEDCISQG
                     GTLGTPQSELENEALFEYARHSVGNDANIWLGLNDMAAEGAWVDMTGGLLAYKNWETE
                     ITTQPDGGKAENCAALSGAANGKWFDKRCRDQLPYICQFAIV"
     exon            208..306
                     /gene="Clec3b"
                     /gene_synonym="Tna"
                     /inference="alignment:Splign:2.1.0"
     exon            307..992
                     /gene="Clec3b"
                     /gene_synonym="Tna"
                     /inference="alignment:Splign:2.1.0"
     regulatory      967..972
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Clec3b"
                     /gene_synonym="Tna"
                     /note="hexamer: AATAAA"
     polyA_site      992
                     /gene="Clec3b"
                     /gene_synonym="Tna"
                     /note="major polyA site"
ORIGIN      
        1 gagggtttcc caggctgagg tccttgtgtc cacagcctta agacgtgtag cccaggctgc
       61 agtggccact gctttctgac ccaggcagca gcagcagtat gggattttgg ggcacctacc
      121 tgctcttctg cctcttctcc ttcctgtccc aggtcattgc agagtcaccc actcccaagg
      181 ccaagaaggc tgcaaatgcc aagaaagatt tggtgagctc aaagatgttc gaggaactca
      241 agaacaggat ggatgtcctg gcccaggagg tggccctgct gaaggagaag caggccttac
      301 agactgtgtg cctgaagggc accaaggtga acttgaagtg cctcctggcc ttcacccaac
      361 cgaagacctt ccatgaggcg agcgaggact gcatctcgca agggggcacg ctgggcaccc
      421 cgcagtcaga gctagagaac gaggcgctgt tcgagtacgc gcgccacagc gtgggcaacg
      481 atgcgaacat ctggctgggc ctcaacgaca tggccgcgga aggcgcctgg gtggacatga
      541 ccggcggcct cctggcctac aagaactggg agacggagat cacgacgcaa cccgacggcg
      601 gcaaagccga gaactgcgcc gccctgtctg gcgcagccaa cggcaagtgg ttcgacaagc
      661 gatgccgcga tcagttgccc tacatctgcc agtttgccat tgtgtagtac agccgctact
      721 agcccagccc ggagcggagg ggctgggcct gggccaggga ggggtgtgaa ccacaaagag
      781 cagaaggctg ttgaagggtg gggcttgtga gcttgctata tgggcggggt ggggtggggg
      841 ggcgttgggg ctgagctgaa cattggtgag tggggcgggc ctggtggttc tcagggagag
      901 acaagttgtt gcagggccca gaggggcggg gagaccttct gttcctctct ctgcttggtt
      961 tttgcaaata aagttggtgc agaattcctg aaaaaaaaaa aaaaaaaaa
//
