LOCUS       NM_199034               1566 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus C-type lectin domain family 2, member m (Clec2m),
            mRNA.
ACCESSION   NM_199034 XM_355819
VERSION     NM_199034.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Flornes LM, Nylenna O, Saether PC, Daws MR, Dissen E and Fossum S.
  TITLE     The complete inventory of receptors encoded by the rat natural
            killer cell gene complex
  JOURNAL   Immunogenetics 62 (8), 521-530 (2010)
   PUBMED   20544345
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Hong S, Choi I, Woo JM, Oh J, Kim T, Choi E, Kim TW, Jung YK, Kim
            DH, Sun CH, Yi GS, Eddy EM and Cho C.
  TITLE     Identification and integrative analysis of 28 novel genes
            specifically expressed and developmentally regulated in murine
            spermatogenic cells
  JOURNAL   J Biol Chem 280 (9), 7685-7693 (2005)
   PUBMED   15613475
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC138620.4.
            
            On Aug 22, 2018 this sequence version replaced NM_199034.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089479.1, AK132711.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-287               AC138620.4         62253-62539         c
            288-374             AC138620.4         61706-61792         c
            375-562             AC138620.4         57414-57601         c
            563-672             AC138620.4         56366-56475         c
            673-1566            AC138620.4         52923-53816         c
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 63.25 cM"
     gene            1..1566
                     /gene="Clec2m"
                     /gene_synonym="4922502D21Rik; Gm1074; SPATA78"
                     /note="C-type lectin domain family 2, member m"
                     /db_xref="GeneID:381816"
                     /db_xref="MGI:MGI:2685920"
     exon            1..287
                     /gene="Clec2m"
                     /gene_synonym="4922502D21Rik; Gm1074; SPATA78"
                     /inference="alignment:Splign:2.1.0"
     CDS             218..787
                     /gene="Clec2m"
                     /gene_synonym="4922502D21Rik; Gm1074; SPATA78"
                     /codon_start=1
                     /product="C-type lectin-like receptor 2m"
                     /protein_id="NP_950199.1"
                     /db_xref="CCDS:CCDS20583.1"
                     /db_xref="GeneID:381816"
                     /db_xref="MGI:MGI:2685920"
                     /translation="MQTDTSPRLPQTSHERRHHRLMFDAKKVLTLWTLLGGAVAVLLW
                     GFFSFPRKFTVTRTARNKTCDDEVKLCPKDWNKLRQNCFSRIQHKNSWLTANDTCELH
                     DATLAVFIDKTEVEILMNQIQEMKTYWIGLHRQNLLGIWVWTNGSKYNNLHEIQDHGQ
                     CAFVHQKGIDSTSCEDQKEFICTREGQCP"
     exon            288..374
                     /gene="Clec2m"
                     /gene_synonym="4922502D21Rik; Gm1074; SPATA78"
                     /inference="alignment:Splign:2.1.0"
     exon            375..562
                     /gene="Clec2m"
                     /gene_synonym="4922502D21Rik; Gm1074; SPATA78"
                     /inference="alignment:Splign:2.1.0"
     exon            563..672
                     /gene="Clec2m"
                     /gene_synonym="4922502D21Rik; Gm1074; SPATA78"
                     /inference="alignment:Splign:2.1.0"
     exon            673..1566
                     /gene="Clec2m"
                     /gene_synonym="4922502D21Rik; Gm1074; SPATA78"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaggacagg gccagtgaga tgtcttgtgg cccatcatgc agaaccatca cgctggagtg
       61 gtgctatctc tcccatctat caatcttgct ctagtcttga ttccaaagaa actcagccct
      121 ccgagtctag agctttgaag acaacggata caactatcag ttctcctttc cgcttaagaa
      181 ttttctcaat ctctgtagtc actggagcac catttctatg cagaccgaca cttcacccag
      241 actacctcag acaagccatg aacgcaggca tcacaggtta atgttcgatg cgaagaaagt
      301 gctgaccctt tggaccctgc taggaggtgc tgttgctgtt cttctttggg ggtttttcag
      361 ttttcctaga aaatttacag ttacaagaac agccagaaac aagacatgtg acgacgaggt
      421 aaagctgtgc cctaaagact ggaacaaact acgtcagaac tgcttctctc gtatccaaca
      481 taaaaactcg tggcttactg ccaacgacac ctgcgaactc catgatgcaa ctctggctgt
      541 gttcatcgac aaaactgaag tggaaatttt gatgaatcaa atacaggaga tgaaaacata
      601 ttggattgga ctgcacagac aaaatttatt aggaatctgg gtttggacaa atggaagtaa
      661 atacaacaat ttgcatgaga tccaagatca tggtcagtgt gccttcgtgc atcaaaaggg
      721 catagacagt accagttgtg aggatcaaaa agaatttatt tgtaccagag aaggccagtg
      781 cccttgaaga tttcttccat ccaaaggaac acgaagagca gtgtctcgtt ttgtctgtga
      841 tgtgtattcc tttccatcga catcacttta agtctaattt gactgacaaa catgtacatg
      901 aatgttatct tcattgaaat agtgactaca aagcctaaca attaaaccaa gcttggcgtg
      961 gtactgctgc atcatcgagg ttggtgcatt tgaagctatg gccatgaagg gccttgctca
     1021 gaagtgatcc atctcagtgg agcacacgag agggcataaa gaataaagag gaaaatccct
     1081 ctgcttgtcc aaaattcagt gacatcttcc agaagaaaaa caagagctgc aggacagggt
     1141 gagcacaaaa aatgctttgt ttgccctcaa ataatacatg attcacgttg aactgtgaag
     1201 gaaggcaaaa ggggagaaac tattgtgact gaagtcccag tgtcaccagt gagggccagg
     1261 caactcgcca caggtctctg ccaaactgaa agacttgagg taacctggat ttgctgttgc
     1321 catagttgct gaaagagtaa aggacacaaa tttcgtgatg agtcggtatg aacagaacgt
     1381 gagcacccgg aagtagagag gaacatgaag aaaagaagct ttgtgacctt gaagaatcca
     1441 tggaggttag cctaaattcc aaaagctgtt tcactcagat tctggataac accaaaatga
     1501 tcttgaagaa agggaggtat agacattaac gctggtcatc attaaaataa aaatctcttc
     1561 aactac
//
