LOCUS       NM_001310654            3276 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus claudin 34C1 (Cldn34c1), transcript variant 3, mRNA.
ACCESSION   NM_001310654 XM_006528409
VERSION     NM_001310654.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3276)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK032219.1 and BY582041.1.
            
            On Jul 17, 2015 this sequence version replaced XM_006528409.1.
            
            Transcript Variant: This variant (3) differs in the 5' UTR, lacks a
            portion of the 5' coding region and initiates translation at a
            downstream start codon, compared to variant 1. The encoded isoform
            (3) has a shorter N-terminus, compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK032219.1, SRR1660821.360443.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3273              AK032219.1         1-3273
            3274-3276           BY582041.1         405-407
FEATURES             Location/Qualifiers
     source          1..3276
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 49.81 cM"
     gene            1..3276
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /note="claudin 34C1"
                     /db_xref="GeneID:73061"
                     /db_xref="MGI:MGI:1920311"
     exon            1..115
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            116..231
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            232..3276
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             254..892
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /note="isoform 3 is encoded by transcript variant 3"
                     /codon_start=1
                     /product="claudin 34C1 isoform 3"
                     /protein_id="NP_001297583.1"
                     /db_xref="CCDS:CCDS81167.1"
                     /db_xref="GeneID:73061"
                     /db_xref="MGI:MGI:1920311"
                     /translation="MVLLNKSANHQIRGFTLATIACIMCNTSMALPEWRICYLNNSML
                     SYPSLAFVNIWEAYICHHNHNSSHLRDCHYYTCHNNLVPLDIRVSQILLQVANVVGLV
                     GTVCSVFALQQLYTEELHKNNDYNPFVLSAVLNAIASTFIFLAVMCNHLSVPSKEEVS
                     FLQSFQMPIFSNAQRAGRAMGLAYISAILFLLSAIIFISYCPSMEIKMFPRV"
ORIGIN      
        1 gaatgggcga gcggtcgcgc cgttgggagg agcagtccgg acccatgccc gtgcaggcag
       61 gacatgggga gagcacgcag cgacaggcat ctggctttct gagccctggg atttgaatgg
      121 aatactacac agctactaaa aacaaggaca tcttgaaatt tgcagtcaga tgcatggaac
      181 gagaaaaggt catcctgagt gatgtaaacc agatccagaa atacaaacat gtttccacat
      241 atttgatgcc agcatggtcc tgctaaacaa gtctgccaat caccaaataa gaggtttcac
      301 tttagctaca atagcatgca taatgtgcaa tacctctatg gcccttccag aatggcgaat
      361 ttgctacttg aacaactcca tgctttccta cccaagtctg gcttttgtga atatttggga
      421 ggcctacatc tgccaccaca accacaactc aagccacctg agagattgcc attactacac
      481 ctgccataac aaccttgttc ctttggatat ccgggtatct caaattctgc tccaggttgc
      541 aaatgttgtt ggtctggttg ggacagtttg ttctgtcttt gctctacagc agttatacac
      601 agaggaactg cataagaata atgactacaa tccatttgtt ctttcagctg tcctcaatgc
      661 tattgctagc acctttattt ttcttgctgt tatgtgtaat cacctctccg tgcccagcaa
      721 ggaagaggta tctttcctgc aatctttcca aatgccaatt ttttccaatg ctcaaagagc
      781 aggcagagcc atgggattgg catacatatc tgccatattg tttttattaa gtgctataat
      841 ttttatttct tactgtcctt caatggaaat caaaatgttt ccccgtgtct gaaaataaat
      901 ttgcagcata cataaccttg aaaatcaaaa tgtcttggca atggttttgg ggacctagac
      961 tgagatgtaa tgggagatat ttttaaaata ttaacttaga ttttctaagg acataaagcc
     1021 ctaccctatg tatcctatga cagaaaatgg caaaatgaca tcaagcattc tttcctattt
     1081 ggtttattac ttctttggtt gaattttttg gtttagtttt ttttcatgtt tttgtttatt
     1141 tgtttgtttt gatttttgtt catttttatc attccaactt gccaattttg ttttatagaa
     1201 tctaaatttt aaatattgtt tgtcaaggta aataatcaat aaatatagtt gtattagtca
     1261 tggatctcta aaggacagaa catatagaat ccatctctca catacaactt tattctctct
     1321 ctctcactct ttcccttcct ctcccttctc cccttctctc tctctctctc tctctctctc
     1381 tctctctctc tctctctctc tctctctctt cagattgcaa agggagattt ccttgtctgg
     1441 ctacattatt tcttttaaag tttaagaatt atccactatg ttcatagcaa ccttatttat
     1501 aatagctata agctggaacg aacccagatg tccctcaaga aaggaatgga tacagaaaat
     1561 atggtacatt tacacaatgg agtactactc agcaattaaa aacagtgaat ttatgaaatt
     1621 cttaggcaaa tggatagatt tggaggatat catcctaaat gaggtaaccc aatcacaaaa
     1681 ggaaacacat gatatgtact cactgataag tggatattag cccagaaact tagaatacac
     1741 aagacacaat ttgcaaaaca catgagtctc aagaagaagg aagagcaaag tgtggataca
     1801 tcctttcttc ttaaaatggg gaacaaaata ccaatggaag gagttacaaa ggcaaagttc
     1861 ggaacagatc ctgaaggaac aaccatccag agactgccct acctggggat acaccccata
     1921 aacaactacc aaacacagtc actaggtaga tgccaataag aggctgctga gaggagcctc
     1981 atatagctgt ctcttgtgag gctctgctag tgcctggcaa atacagaagt ggatgctcac
     2041 aattatccat tggacagagc acatgggtcc caatgaagga gccagagaaa tactcattga
     2101 gctggagggg tctgaagccc tataggtgga acatcaatat gaactaatca gtacccccaa
     2161 gctccttgga accataccaa caatcaaaga aaacatatgg ttgaacttgt ggctctagct
     2221 atatatgtag cagatgatgg cctaatcagt catcaaagga aggagaggcc cttggtcttg
     2281 ggaaggctct atgccccagt acaggggaat gccaggagta ggaatcagag tgggtgggtt
     2341 ggggagtagg gggattgggg agggaatagg ggatttttgg aggggaaact aagaaagggg
     2401 ctaacatttg aaatgtaaat aaagaaaata tctaaaaaga aagaattatt catttaaaat
     2461 taaattcccg gaaatgttat taccccagaa aatatcattt aattttattt gcatctaatt
     2521 tgcacaatct gcctcttagg attataattc acacttgtac acatcataca cacaaacaca
     2581 aacacacacc acacacattt gtgtagtgtc cccatctgcc tattacccat gacattttaa
     2641 taattttggt ttgctgaaca aatttaatca atgtcttctc agttaactaa ctctggttga
     2701 gctctttaga aaatgtactt tctgggtgat gccatgttct ttgtactgaa tgttaatata
     2761 taggtgtctt atagtacctg cctcttactg atacaaggtt tgatacaatt gttggtagat
     2821 ccttgaggag aagacttaat ttcacttaag ctgaatggtt tccccaacta aaagtttcat
     2881 ctccatgtgg tccctgtttg tagcaatgga atattagcat tccatgaggt cattggttga
     2941 tgtgtttcta attagcagaa aggattttag agagtttgaa ctactatgtc tatttgctca
     3001 ctctgaattc ttatgtatat caagaagttg gagtaactgc ttcattcttc ccctctactt
     3061 tcaataattt ataaaagaat ttgaaggtat tatttagatt ttgtttgtac tttttggttt
     3121 ttgaatattg aagtagttgg tgttgtttca tgagttaact ttcgtccatt tttacgtatg
     3181 taaataatca agatcttgag gtgtatttac agagagcagt gattattcca ctgtgtttca
     3241 tttcaagcac ttaataaatg aacaaacaaa tgctaa
//
