LOCUS       NM_001033799            1103 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus claudin 34B4 (Cldn34b4), transcript variant 1, mRNA.
ACCESSION   NM_001033799
VERSION     NM_001033799.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1103)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK132827.1.
            
            On Apr 6, 2007 this sequence version replaced NM_001033799.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK132827.1, BC147629.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1103              AK132827.1         2-1104
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 38.3 cM"
     gene            1..1103
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /note="claudin 34B4"
                     /db_xref="GeneID:619294"
                     /db_xref="MGI:MGI:3588232"
     exon            1..170
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            171..237
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            238..1103
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             263..898
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /codon_start=1
                     /product="claudin 34B4"
                     /protein_id="NP_001028971.1"
                     /db_xref="CCDS:CCDS53116.1"
                     /db_xref="GeneID:619294"
                     /db_xref="MGI:MGI:3588232"
                     /translation="MLIKNRCNSQMGGFALTTVAWLICCISIGLPQWRVWHFQDPVVF
                     KSTTAFVGMWRVCTLQYDEDFRNMRICHQYNYHDTFLPLNIRMIQQLLLVSSFFGLVG
                     KVTTIIALWNVCQGRVHRKATYNPFGLSGILNIISSSFICLAILINYVSIIFQEGIIF
                     PPSFNIPSQPDTQEIGSAMALAFIAAVLFLLSGTILLTSNFPVDKPVCSKY"
     regulatory      1082..1087
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /note="putative"
     polyA_site      1103
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /note="putative"
ORIGIN      
        1 agaattagaa gaagtccagt attaagccag actcagagct gatggtaaag gaacctcaaa
       61 ggacaagtga gaggacccct ttccttgtca gctccactgg actccatacc tgactgccct
      121 gccacataat ctaccaccat cagtgagttc acttgaagac agtatctctg ttgctgtatt
      181 gcacatagcc aatgtgaagg aaattataaa gaaggtgaaa actaagtttg ctgcaggttg
      241 ctgaatattc actgtgatca tcatgttaat caaaaaccgt tgcaatagcc aaatgggagg
      301 ctttgctttg acaactgtgg cttggctaat ttgctgtatc tccataggct tacctcagtg
      361 gcgtgtgtgg cacttccaag accctgtggt ctttaagtct accacagcat ttgttggcat
      421 gtggagagtc tgtactctcc agtatgatga ggactttagg aatatgagaa tatgtcacca
      481 atacaactac catgatacct tccttccatt gaatatcaga atgatccaac aattgctact
      541 ggtctctagc ttttttggac tggttggaaa agtcaccacc attattgccc tttggaatgt
      601 gtgtcagggg agagtacata gaaaggccac ttacaatcca tttggtctat ctggaattct
      661 gaacatcatt tctagcagct ttatttgcct tgccatattg attaattatg tatctatcat
      721 attccaggag ggtataatat ttccaccatc tttcaatata ccttcccagc cagacactca
      781 ggaaattgga agtgccatgg ccttggcatt tatagctgca gttttatttc tattaagtgg
      841 cacaattttg cttacttcaa attttcctgt agacaagcca gtatgttcta aatattaaaa
      901 gtaaatttct actttacata acattcaaaa tccaaagtta tctgtaatga aggaatgtgt
      961 ctacataaat tttcaaagaa ctcaatttag cctttgagga aaaatgacca tgttggtctc
     1021 ttatattttc tgtattcttg tttgtttcat tacttcattg ctggattatg gactttcaaa
     1081 aaataaaatc taatccataa tcc
//
