LOCUS       XM_036165797            5137 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus chloride channel, voltage-sensitive 1
            (Clcn1), transcript variant X2, mRNA.
ACCESSION   XM_036165797
VERSION     XM_036165797.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5137
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..5137
                     /gene="Clcn1"
                     /gene_synonym="adr; Clc-1; Clc1; mto; myotonia; nmf355;
                     SMCC1"
                     /note="chloride channel, voltage-sensitive 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 2 ESTs, 63 long SRA reads, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:12723"
                     /db_xref="MGI:MGI:88417"
     CDS             1591..3561
                     /gene="Clcn1"
                     /gene_synonym="adr; Clc-1; Clc1; mto; myotonia; nmf355;
                     SMCC1"
                     /codon_start=1
                     /product="chloride channel protein 1 isoform X2"
                     /protein_id="XP_036021690.1"
                     /db_xref="GeneID:12723"
                     /db_xref="MGI:MGI:88417"
                     /translation="MDFPFDLKELPAFAVIGICCGFLGAVFVYLHRQVMLGVRKHKCL
                     SQFLAKHRLLYPGIVTFVIASLTFPPGMGQFMAGELMPREAISTLFDNNTWVKHIGDP
                     QSLGQSAVWLHPQVNVIIIILLFFVMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLV
                     GEIMAMLFPEGILFDDIIYKILPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHI
                     LPMMVAVILANMVAQSLQPSLYDSIIQVKKLPYLPDLGWNQLSKFTIFVEDIMVRDVK
                     FVSASCTYGELRNLLQATTVKTLPLVDSKDSMILLGSVERSELQSLLQRHLCAERRLK
                     AAQDMARKLSELPYNGKAQLAGDWHPGGRPESFAFVDEDEDEDLSRKMELPLTPAPPP
                     PSPPPPPSQFPIAPSNPEEPNGPLPSHKQPPEASDSADQRSSTFQRLLHCLLGKAHSK
                     KKKITQDSTDLVDNMSPEEIEAWEREQLSQPVCFDCCCIDQSPFQLVEQTTLHKTHTL
                     FSLLGLHLAYVTSMGKLRGVLALEELQKAIEGHTKSGVQLRPPLASFRNTTSIRKTPG
                     GPPPPAEGWNVPEDGDGAPGREVMVPTMPETPVPPPSPEAPSCLAPARAEGELEELEM
                     VGSLEPEEELADILHGPSLRSTDEEDEDELIL"
ORIGIN      
        1 agacgccttg gggacagtca aaagcagagg cttaaggagc tacttggggg agactaggag
       61 caagcaggcc aaggcctggc tggggcttgg ggggagaaca catggagcgg tcccagtccc
      121 agcggcatgg aggggaacag agctggtggg gcagtgcccc ccagtaccag tacatgccct
      181 ttgaacattg taccagctac ggactgccct cagagaatgg gggccttcag caccggcccc
      241 gaaaggacat gggtcccagg cacaatgccc acccaacaca gatatatggc catcaaaaag
      301 aacaatattc atataaggca caggacgggg gaatgcccaa gaagatgggc tccagttcta
      361 ccatggacag cttggatgag gaccactatt ctaaatgtca aggtgatggg gactgaggaa
      421 taaaggaatc tggaatagga gatacaggga ttgagagaat aacctagatg ccccattaca
      481 catctcccaa cacatatgtg tgtgtgtgca tgttcacaca cacatgcaca catagagata
      541 tattttgttt ggcttctttc ccagccataa gaaacaagag ttttacatga acattgtatt
      601 tacaagggca ttacaggaca ttacaggagt agggttgtag tgctttctgg aatgataggg
      661 gcagtaactg gcagagacat aaagagatgt ccagtgacca gtacagagct gactcctacc
      721 tccattcctc agcctgctcc caaaaaaatg gctagagagc tgctttcttc cttctttccc
      781 tttacttctc cctagactgt gtccatcgcc tgggacgtgt gctgagaagg aagctggggg
      841 aagattggat ctttcttgtg ctcctgggcc tcctgatggc tctagtcagc tggtgcatgg
      901 actatgttag tgccaagagc cttcaggcct acaagtggac ctatgcccag atgaagccta
      961 gccttcctct gcagtacctg gcctgggtca ccttcccact tatcctgatc ctcttcagcg
     1021 ccctcttttg ccaactcatc tctccccagg ctgtgggctc tggaatccct gagatgaaaa
     1081 caattcttcg tggtgttgtc ttgaaggaat acctcacact caaggccttt gtagccaagg
     1141 tggtagcttt gacagctgga ctgggcagtg gcatccctgt ggggaaagag ggtccctttg
     1201 ttcacatcgc cagcatctgt gctgctgtcc tcagcaagtt tatgtccatg ttctctggtg
     1261 tctatgagac cgtgcctggg cagcttgatc tcctggtgcc agcctgtgca gtgggcgtgg
     1321 gatgctactt tgcagcccct gatggagtag cagccatact attacactga catcctgaca
     1381 gtgggctgtg ccgtgggggt cggttgctgt tttggaacac cacttggagg agtgctattt
     1441 agcatcgagg tcacctctac ctactttgct gttcggaatt actggcgagg attctttgca
     1501 gccacattca gtgcctttgt gttccgtgtc ctggccgttt ggaacaagga tgctgtcacc
     1561 atcactgctc tgttcagaac gaatttccga atggatttcc cctttgacct gaaggaactc
     1621 ccagcttttg ctgtcattgg gatttgctgc gggttcttgg gagctgtttt cgtttatctg
     1681 catcgccaag tcatgctcgg tgtccgaaag cacaagtgtc tcagccaatt tcttgctaag
     1741 caccgcctgc tatatcctgg aattgttacc tttgtcatcg cctcgctcac atttccacca
     1801 ggaatgggtc aattcatggc tggagagctg atgccccgtg aagctatcag taccctcttt
     1861 gacaacaaca catgggtaaa gcacataggt gacccccaaa gcttgggcca gtcagctgtg
     1921 tggcttcacc cccaggtcaa cgtgatcatc atcatccttc tcttcttcgt tatgaagttt
     1981 tggatgtcca ttgtagccac cactatgccc ataccctgtg gaggcttcat gcctgttttt
     2041 gtgctaggag ctgcatttgg aaggctggta ggagagatca tggccatgct attccctgag
     2101 ggtatcttat ttgatgatat catctataag atcttacctg ggggctatgc agtaattgga
     2161 gcagcagctt tgacaggggc tgtctcccac acagtctcca cagccgtcat ttgcttcgaa
     2221 ttaaccggtc agattgctca catcctgccc atgatggtgg ctgttatctt ggccaacatg
     2281 gtggctcaga gtctgcagcc ctccctctat gacagcatca tccaggtcaa gaagcttccc
     2341 tatctgccag accttggttg gaaccagctc agcaaattta caatttttgt tgaggacatc
     2401 atggtacgtg atgtgaagtt cgtttcagct tcttgtacat atggggaact gagaaaccta
     2461 ctccaggcca ccacagtcaa gactttacca ttggttgact ccaaagattc aatgatcctg
     2521 ctgggctctg tggaacgctc agaactgcag tccctcctgc agcgccacct gtgtgcagag
     2581 cgaaggttga aggctgccca ggacatggct cgaaagttat cagagctgcc ttataatggc
     2641 aaggctcagc tggctgggga ctggcatcct ggtggtcgac ctgagtcctt tgccttcgta
     2701 gatgaagatg aagatgagga cctctccagg aagatggagc ttccactgac tccagctcct
     2761 ccccctcctt cccctcctcc tccaccttcc cagtttccta ttgctccatc aaaccctgaa
     2821 gaacctaatg ggccactgcc cagccataaa cagccacctg aagcctcaga ctctgcagat
     2881 caaagatcat ccaccttcca acgcctgctg cactgcttgc taggaaaagc tcactccaaa
     2941 aagaagaaaa taacacagga ttcaacagat ttagtggata acatgtcacc tgaagagatt
     3001 gaggcctggg agcgggagca gctgagccag cctgtgtgct ttgattgctg ctgcatcgac
     3061 cagtctccct tccagctggt ggagcagaca accctgcaca agactcatac actcttctca
     3121 cttcttggcc tccatcttgc ctatgtgacc agcatgggga agctcagagg tgtcttggca
     3181 ctagaagagc tacagaaagc tattgagggc cacaccaaat ctggggtgca gcttcgccct
     3241 ccacttgcca gcttccggaa tacaacttca atccggaaga ctcctggggg gccaccccct
     3301 cctgcagagg gctggaatgt acctgaggat ggagatgggg ctcctggaag agaagtcatg
     3361 gttcctacca tgccagagac tcctgtccca ccaccatctc cagaggcccc ttcctgcctg
     3421 gccccagcca gagcggaggg tgagctggag gaactggaga tggtggggag cctagagcct
     3481 gaggaggagc tggctgacat cttgcatggc cccagtctgc ggtccactga tgaggaagat
     3541 gaggacgagc tgatcctgtg aacaaccccc tctatgcctt cttcttaaaa accacagggc
     3601 ccatgtcaga gagtggacgt gtatgtgata tggagaggcc tccacttcat cttcttccta
     3661 ccaccactgt gaaaggtgat ggtgataatc ttaaggagaa cttgatcttg ggcagggaag
     3721 aatttgggtc catcagacct ccccccgcca ccccccattt ccatgcttaa aggactcttg
     3781 tgttttcctg ctgtgcaggt tcagtcccta tcactctaaa gccccacagt tcccagtgtt
     3841 cagtcaccat cctggccctg cctgtttata ttcagtttcc atacggagta ggtgagtgga
     3901 ggtccatatt ggatgaatct gcaagtgtca cattggaagg gaatgtggga ccacaatatt
     3961 gccatgtgga ttgactaccc taaaatgtgt ccccaagtct gccagtcctg tgtgctctcc
     4021 aaaatctgtc ttagacccca tcagtgctgc cattgtctgt ttccaggcca agcccatatc
     4081 ggggctgaaa aggccaaccc ttatttccga ggaaccaagt gcagttcccc cgggaagagg
     4141 ttgaggtaag ctttgtctgg tgaggcaggt gtcagacccc tgcagcagaa agctctagtc
     4201 cttatccctg gcgctctgcc tagttctatg ttacacctag aacatgcttc tttccttccg
     4261 cccactggag tggctaactt agcctgccaa gagtcacctc tgccttgggg ccactcttgc
     4321 tagagctcct cccaaatcac accaaggctc tcgtgccaca gtggggaatg cagattccag
     4381 tcctttccag tccttccagc tccttgcacc cttgacttgg caagctttag tttactccac
     4441 tcttagagga gttttccttc caaaccagca aggcgctcaa tagccatgct gtatggcatt
     4501 agcctgctta acctagaacc atatgccagg tgctgtgggc attcagactc tctgctccat
     4561 ttgggggctc tttctgcccc tcactatata cttttagctc tgtagttgag ccctcatata
     4621 ttctcccagt tctgcccccc cccccattcc caggtttctt ctgtccccca aataagacac
     4681 tcatagtcaa aggatgccac cacattctgt ttagtgttgt tccacacagc ctctggcctt
     4741 ctccaacatg ggctccttcc accaaccaag gctaagacat tgaggcctag gtaggaggat
     4801 tagcaggggg cttccaagcc catgcccatg tgtatataat ctataatact tatatatatt
     4861 tatatagaat tctctctgta atatatgtca tagactcctt cctgggcctg gggtgagagt
     4921 ttcacattaa gaaaacatgc taagactgac cataaaaatg ggtatttctc agacctggaa
     4981 gacagagtgt gggatatata tggacaaggg taagaacttg tccttcacga ttcctttctt
     5041 aacacaagga aaagaaggga ggtatgtggg ctgggggagg caatggaagg gaaggaatgg
     5101 aaggtttgga ttttcattta ataaagtcaa ttgaaaa
//
