LOCUS       NM_001165989            6666 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus cytoskeleton associated protein 5 (Ckap5), transcript
            variant 1, mRNA.
ACCESSION   NM_001165989 XM_006500344
VERSION     NM_001165989.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6666)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 6666)
  AUTHORS   Simerly,C., Robertson,E., Harrison,C., Ward,S., George,C.,
            Deleon,J., Hartnett,C. and Schatten,G.
  TITLE     Male meiotic spindle poles are stabilized by TACC3 and cKAP5/chTOG
            differently from female meiotic or somatic mitotic spindles in mice
  JOURNAL   Sci Rep 14 (1), 4808 (2024)
   PUBMED   38413710
  REMARK    GeneRIF: Male meiotic spindle poles are stabilized by TACC3 and
            cKAP5/chTOG differently from female meiotic or somatic mitotic
            spindles in mice.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 6666)
  AUTHORS   Markiewicz-Potoczny,M., Lobanova,A., Loeb,A.M., Kirak,O.,
            Olbrich,T., Ruiz,S. and Lazzerini Denchi,E.
  TITLE     TRF2-mediated telomere protection is dispensable in pluripotent
            stem cells
  JOURNAL   Nature 589 (7840), 110-115 (2021)
   PUBMED   33239785
REFERENCE   4  (bases 1 to 6666)
  AUTHORS   Nakano,Y., Wiechert,S. and Banfi,B.
  TITLE     Overlapping Activities of Two Neuronal Splicing Factors Switch the
            GABA Effect from Excitatory to Inhibitory by Regulating REST
  JOURNAL   Cell Rep 27 (3), 860-871 (2019)
   PUBMED   30995482
REFERENCE   5  (bases 1 to 6666)
  AUTHORS   Lu,A., Zhou,C.J., Wang,D.H., Han,Z., Kong,X.W., Ma,Y.Z., Yun,Z.Z.
            and Liang,C.G.
  TITLE     Cytoskeleton-associated protein 5 and clathrin heavy chain binding
            regulates spindle assembly in mouse oocytes
  JOURNAL   Oncotarget 8 (11), 17491-17503 (2017)
   PUBMED   28177917
  REMARK    GeneRIF: our results demonstrate that CKAP5 is important in oocyte
            maturation and early embryo development, and CKAP5 might work
            together with CLTC in mouse oocyte maturation
REFERENCE   6  (bases 1 to 6666)
  AUTHORS   van der Vaart,B., Franker,M.A., Kuijpers,M., Hua,S., Bouchet,B.P.,
            Jiang,K., Grigoriev,I., Hoogenraad,C.C. and Akhmanova,A.
  TITLE     Microtubule plus-end tracking proteins SLAIN1/2 and ch-TOG promote
            axonal development
  JOURNAL   J Neurosci 32 (42), 14722-14728 (2012)
   PUBMED   23077057
  REMARK    GeneRIF: ch-TOG promotes axonal development and is expressed in
            brain throughout development.
REFERENCE   7  (bases 1 to 6666)
  AUTHORS   Lyssand,J.S., DeFino,M.C., Tang,X.B., Hertz,A.L., Feller,D.B.,
            Wacker,J.L., Adams,M.E. and Hague,C.
  TITLE     Blood pressure is regulated by an alpha1D-adrenergic
            receptor/dystrophin signalosome
  JOURNAL   J Biol Chem 283 (27), 18792-18800 (2008)
   PUBMED   18468998
REFERENCE   8  (bases 1 to 6666)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
REFERENCE   9  (bases 1 to 6666)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   10 (bases 1 to 6666)
  AUTHORS   Ko,M.S.
  TITLE     An 'equalized cDNA library' by the reassociation of short
            double-stranded cDNAs
  JOURNAL   Nucleic Acids Res 18 (19), 5705-5711 (1990)
   PUBMED   2216762
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL691489.21.
            
            On or before Sep 26, 2017 this sequence version replaced
            XM_006500344.3, NM_001165989.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10223971.2762.1,
                                           SRR10223970.3919.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-89                AL691489.21        66807-66895
            90-183              AL691489.21        86367-86460
            184-377             AL691489.21        88819-89012
            378-584             AL691489.21        90597-90803
            585-756             AL691489.21        95312-95483
            757-889             AL691489.21        96545-96677
            890-990             AL691489.21        97620-97720
            991-1104            AL691489.21        99094-99207
            1105-1209           AL691489.21        100852-100956
            1210-1299           AL691489.21        102799-102888
            1300-1464           AL691489.21        102994-103158
            1465-1593           AL691489.21        104365-104493
            1594-1776           AL691489.21        105666-105848
            1777-1890           AL691489.21        108182-108295
            1891-2001           AL691489.21        108682-108792
            2002-2094           AL691489.21        110225-110317
            2095-2280           AL691489.21        112393-112578
            2281-2375           AL691489.21        113018-113112
            2376-2433           AL691489.21        116061-116118
            2434-2559           AL691489.21        116208-116333
            2560-2699           AL691489.21        117609-117748
            2700-2874           AL691489.21        118080-118254
            2875-2988           AL691489.21        119468-119581
            2989-3117           AL691489.21        121155-121283
            3118-3312           AL691489.21        125767-125961
            3313-3448           AL691489.21        126283-126418
            3449-3537           AL691489.21        128714-128802
            3538-3663           AL691489.21        131711-131836
            3664-3813           AL691489.21        134728-134877
            3814-4017           AL691489.21        135356-135559
            4018-4153           AL691489.21        135733-135868
            4154-4347           AL691489.21        136407-136600
            4348-4520           AL691489.21        139251-139423
            4521-4694           AL691489.21        140686-140859
            4695-4815           AL691489.21        141051-141171
            4816-4995           AL691489.21        146291-146470
            4996-5183           AL691489.21        147490-147677
            5184-5259           AL691489.21        152785-152860
            5260-5448           AL691489.21        155018-155206
            5449-5586           AL691489.21        155287-155424
            5587-5670           AL691489.21        155839-155922
            5671-5830           AL691489.21        156346-156505
            5831-5982           AL691489.21        159733-159884
            5983-6666           AL691489.21        160027-160710
FEATURES             Location/Qualifiers
     source          1..6666
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 50.63 cM"
     gene            1..6666
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /note="cytoskeleton associated protein 5"
                     /db_xref="GeneID:75786"
                     /db_xref="MGI:MGI:1923036"
     exon            1..89
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            90..183
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     CDS             127..6225
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="cytoskeleton-associated protein 5 isoform 1"
                     /protein_id="NP_001159461.1"
                     /db_xref="CCDS:CCDS50640.1"
                     /db_xref="GeneID:75786"
                     /db_xref="MGI:MGI:1923036"
                     /translation="MGDDSEWLKLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSP
                     EWSKYLGLIKKFVTDSNAVVQLKGLEAALVYVENAHVAGKTTGEVVSGVVSKVFNQPK
                     AKAKELGIEICLMYVEIEKGESVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKII
                     SLKPIIKVLPKLFESRDKAVRDEAKLFAIEIYRWNRDAVKHTLQNINSVQLKELEEEW
                     VKLPTGAPKPSRFLRSQQELEAKLEQQQSAGGDAEGGGDDGDEVPQVDAYELLDAVEI
                     LSKLPKDFYDKIEAKKWQERKEALEAVEVLVKNPKLEAGDYADLVKALKKVVGKDTNV
                     MLVALAAKCLTGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVVQALQEAIDAIFLTT
                     TLQNISEDVLAVMDNKNPTIKQQTSLFIARSFRHCTSSTLPKSLLKPFCAALLKHIND
                     SAPEVRDAAFEALGTALKVVGEKSVNPFLADVDKLKLDRIKECSEKVELVHGKKSGLA
                     TEKKESKPLPGRAAASGAAGDKDTKDVSGPKPGPLKKTPTAKAGGPSKKGKTTAPGGS
                     ASAGTKNKKGLETKEIVEPELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQ
                     KAVELMERTEMPCQALVKMLAKKPGWKETNFQVMQMKLHIVALIAQKGNFSKTSAQIV
                     LDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQVMSMAFSQKNPKNQSETLNWLS
                     NAIKEFGFSELNVKAFISNVKTALAATNPAVRTSAITLLGVMYLYVGPSLRMIFEDEK
                     PALLSQIDAEFQKMQGQSPPAPTRGIAKHSTSATDEGEDGEEPGEGGNDVVDLLPRIE
                     ISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEAKFIQPNIGELPTALKGRLNDSNK
                     ILVQQTLNILQQLAVAMGANIRQHVKNLGIPVITVLGDSKNNVRAAALATVNAWAEQT
                     GMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDLILCVPHLYSCLEDR
                     NGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKANMPSKPAAPA
                     KAMSKPMGGSAPAKTQPIPAPVEDSVSSTIEAKPDLKKAKAPGVSSKAKSVQGKKVPS
                     KTTLKEDDDKSGPIFIVVPNGKEQRMRDEKGLKVLKWNFTTPRDEYIEQLKTQMSTCV
                     AKWLQDEMFHSDFQHHNKALAVMVDHLESEKDGVISCLDLILKWLTLRFFDTNTSVLM
                     KALEYLKLLFTLLSEEEYHLTENEASSFIPYLILKVGEPKDVIRKDVRAILNRMCLVY
                     PASKMFPFIMEGTKSKNSKQRAECLEELGCLIESYGMNVCQPTPGKALKEIAIHIGDR
                     DNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDMSMLEERIKRSAKRPSAAPVKQAE
                     EKPQRTQNINSNANMLRKGPAEDMSSKLNQARSLSGHPEAAQMVRREFQLDLDEIEND
                     NGTVRCEMPELVQHKLDDIFEPVLIPEPKIRAVSPHFDDMHSNTASTINFIISQVASG
                     DINTSIQALTQIDEVLRQEDKAEAMSGHIDQFLIATFMQLRLIYSTHMADEKLDKDEI
                     IKLYSCIIGNMISLFQIESLAREASTGVLKDLMHGLITLMLDSRIEDLEEGQQVIRSV
                     NLLVVKVLEKSDQTNILSALLVLLQDSLLATASSPKFSELVMKCLWRMVRLLPDTINS
                     INLDRILLDIHIFMKVFPKEKLKQCKSEFPIRTLKTLLHTLCKLKGPKILDHLTMIDN
                     KNESELEAHLCRMMKHSMDQTGSKSDKETEKGASRIDEKSSKAKVNDFLAEIFKKIGS
                     KENTKEGLAELYEYKKKYSDTDIEPFLKNSSQFFQSYVERGLRVIEMERESKGRIPTS
                     TGISPQMEVTCVPTPTSTVSSLGNTNGEEVGPSVYLERLKILRQRCGLDNTKQDDRPP
                     LTSLLSKPAIPPVASSTDMLHSKLSQLRESREQHQHSDLDSNQTHSAGTMTSSSSTTN
                     IDDLKKRLERIKSSRK"
     exon            184..377
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            378..584
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            585..756
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            757..889
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            890..990
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1104
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            1105..1209
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            1210..1299
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            1300..1464
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            1465..1593
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            1594..1776
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            1777..1890
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            1891..2001
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            2002..2094
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            2095..2280
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            2281..2375
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            2376..2433
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            2434..2559
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            2560..2699
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            2700..2874
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            2875..2988
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            2989..3117
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            3118..3312
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            3313..3448
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            3449..3537
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            3538..3663
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            3664..3813
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            3814..4017
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            4018..4153
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            4154..4347
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            4348..4520
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            4521..4694
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            4695..4815
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            4816..4995
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            4996..5183
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            5184..5259
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            5260..5448
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            5449..5586
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            5587..5670
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            5671..5830
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            5831..5982
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     exon            5983..6666
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /inference="alignment:Splign:2.1.0"
     regulatory      6645..6650
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /note="hexamer: AATAAA"
     polyA_site      6666
                     /gene="Ckap5"
                     /gene_synonym="3110043H24Rik; 4930432B04Rik;
                     D730027C18Rik; mKIAA0097"
                     /note="major polyA site"
ORIGIN      
        1 aatgaacaac gaggacactg cggggtgtgc ggcggcccaa gcggttttaa acggcttaga
       61 gcaggcccct cggttctgac ccggcagagg aactactttt aactccaaga gaaaactaga
      121 agcacaatgg gagatgacag tgagtggttg aaattaccag ttgatcagaa atgtgaacac
      181 aagctatgga aagcaagatt aagtgggtat gaagaagcct tgaagatctt ccagaaaata
      241 aaggatgaaa agagtccaga atggtccaaa tacttaggat taatcaaaaa atttgtcact
      301 gattccaatg cagtggttca attgaaagga ctagaagctg cacttgtcta tgttgaaaat
      361 gctcatgttg caggaaaaac aacgggagag gttgtatcag gtgttgtaag taaagtcttc
      421 aaccaaccta aagccaaagc caaggaactg ggcatagaga tttgcctcat gtatgttgag
      481 attgaaaaag gagagtctgt acaagaagag cttctgaagg gcctggataa caagaacccc
      541 aagatcatag tggcctgtat agaaacactg aggaaagcct taagtgaatt tggttccaaa
      601 atcatctcac ttaagccaat tattaaagtg ttgccaaaac tatttgaatc tcgagacaag
      661 gctgttcggg atgaagccaa attatttgct atagagattt atcgatggaa tcgagatgct
      721 gtgaaacaca cactacaaaa tataaattct gtccagttga aagaattaga agaagagtgg
      781 gtcaagctgc caacaggtgc tcctaagccc agtcggtttc tgcgttccca acaagaacta
      841 gaagctaaac tggaacagca acagtctgct ggtggagatg cagaaggggg tggtgatgat
      901 ggtgatgagg taccacaggt agatgcttat gagcttctgg atgcggtaga gatcctttcc
      961 aaacttccca aagactttta tgacaaaatt gaggcaaaga aatggcaaga gagaaaagaa
     1021 gctctggagg ctgtagaagt actagtgaaa aaccccaagc tggaagcagg cgattacgca
     1081 gatttagtga aagcattaaa aaaggttgtt ggaaaggaca ccaatgtcat gttggtagct
     1141 ttggcagcaa aatgtcttac tggcttagct gttgggctca gaaagaaatt tggacaatat
     1201 gcaggacatg ttgtgccaac aattttggaa aaattcaaag aaaagaagcc tcaagtggta
     1261 caagccctgc aggaggcaat tgatgcaatc ttcctcacta ccacactaca gaacatcagt
     1321 gaggatgtct tagcagtaat ggataataaa aatcccacca tcaagcagca gacatcactt
     1381 tttattgcaa gaagctttcg tcactgcact tcctctacat tgccgaagag tctactaaaa
     1441 cccttttgtg ctgctctact taagcacatc aatgattctg ctcctgaagt cagagatgct
     1501 gcatttgaag cactgggtac agctttgaag gtggttggtg agaaatcagt aaacccattt
     1561 ttagctgatg ttgacaaact caaacttgat aggatcaaag aatgttcaga aaaagtagaa
     1621 ctggttcatg gtaaaaaatc tggacttgca actgaaaaga aggaatccaa gcctctacct
     1681 ggaagggctg cagcatcagg ggctgcaggg gacaaagaca caaaagatgt ttcaggaccc
     1741 aaaccaggac cgttaaaaaa aacacctact gctaaggctg gtggaccatc taagaaaggt
     1801 aaaacaactg caccaggtgg ctcagcaagt gccgggacaa agaataagaa aggattggag
     1861 accaaagaaa tagtggagcc agaactctca attgaagtat gtgaagagaa agcttcagct
     1921 gttcttcccc caacctgtat tcagcttcta gacagcagca actggaagga aaggctggcc
     1981 tgtatggaag aattccaaaa ggctgttgaa ctaatggagc gaactgagat gccgtgccag
     2041 gcattggtga agatgctagc aaaaaaacct ggatggaaag aaactaattt tcaggtgatg
     2101 cagatgaagc ttcacattgt tgctttgatt gcccagaagg gaaatttttc taaaacgtct
     2161 gctcagattg tattagatgg ccttgtagac aagattggag atgtgaaatg tgggaacaat
     2221 gcaaaagaag ccatgacagc aatagctgaa gcgtgcatgc tgccctggac agctgagcag
     2281 gtgatgtcaa tggccttctc acaaaagaat cctaagaatc aatcagaaac tctaaattgg
     2341 ctatcaaatg caataaaaga atttggattt tctgagttga atgtcaaagc tttcattagc
     2401 aacgtgaaga ctgctcttgc tgcaacaaat cctgctgtga ggacttctgc catcaccctg
     2461 cttggcgtga tgtatctata tgttggtcct tctttgagaa tgatctttga ggatgagaag
     2521 cctgccctcc tatcccagat agatgcagaa tttcaaaaga tgcagggaca aagtcctccc
     2581 gctccaacga ggggaattgc taagcacagc acaagtgcta cagatgaagg agaagatgga
     2641 gaggaaccag gtgaaggggg caatgatgtt gttgatcttt tgccgaggat tgagatcagt
     2701 gacaaaatta cttcagagtt ggtgtctaag attggtgaca agaattggaa gatcaggaaa
     2761 gaaggcctag atgaagtggc aggtattatc aatgaagcaa aatttatcca accaaatata
     2821 ggtgaacttc caactgcctt gaagggtcga ctgaatgatt caaacaaaat cttggtgcag
     2881 cagacactga atatccttca gcaactggca gtagccatgg gtgcaaacat caggcagcat
     2941 gtaaagaacc tgggcatccc tgtcattact gttctcggag atagcaagaa caatgttcga
     3001 gctgctgccc tagcaactgt gaatgcttgg gcagaacaaa ctggcatgaa agaatggctg
     3061 gagggagaag atctttctga agaacttaaa aaggaaaatc ccttcctgag gcaagagctt
     3121 ctgggatggc tggcagagaa actacctaca ctccgttcca ctcctacaga tcttatcctt
     3181 tgtgttcctc atctgtattc ctgtctagaa gatcgaaatg gagatgtacg gaagaaggcc
     3241 caagatgctt tgccattctt tatgatgcat ttaggatatg aaaaaatggc taaggctact
     3301 gggaaactaa agccaacttc taaagatcaa gtactggcca tgctagaaaa ggccaaagct
     3361 aacatgccat ccaagcctgc tgcacctgct aaggccatgt ccaaaccaat gggagggtcg
     3421 gctccagcca aaacccagcc tataccagca cctgttgaag attctgtttc cagtaccata
     3481 gaagctaagc ctgatctgaa aaaggctaaa gctccaggcg tttcttccaa agcaaagagt
     3541 gtacaaggga agaaagtgcc aagcaaaacc accttaaagg aagacgacga caaatctggt
     3601 cctattttta ttgttgttcc aaatggaaag gagcaaagga tgagagatga gaaaggatta
     3661 aaggtgctaa agtggaattt tactacccca cgggatgagt acattgaaca gctgaagact
     3721 cagatgtcta cctgtgtggc taaatggtta caggatgaaa tgtttcactc agatttccag
     3781 catcacaata aagccctagc tgtcatggtt gatcacttgg aaagtgaaaa agacggtgtc
     3841 atcagttgct tagatcttat cttaaaatgg cttaccctcc ggtttttcga caccaataca
     3901 agcgttctaa tgaaagcact ggaatattta aaattgcttt tcaccctgct gagtgaggaa
     3961 gagtatcatc ttactgagaa tgaagcatcg tcctttatcc cctatctcat cctcaaggtt
     4021 ggagaaccaa aggatgtcat tcgtaaagat gtccgtgcta tcctgaaccg gatgtgcctt
     4081 gtctacccag ccagcaaaat gttccccttc attatggaag gaaccaagtc caaaaactct
     4141 aagcagagag cagagtgcct ggaagagcta ggttgcttaa ttgagtccta tggtatgaat
     4201 gtttgtcagc caaccccagg aaaagcctta aaggagatag ctattcacat aggagaccga
     4261 gacaatgctg tacggaatgc tgccctcaac accattgtaa cagtgtacaa cgtgcatgga
     4321 gatcaggtgt tcaaactgat tggaaatctt tctgagaaag acatgagcat gcttgaggag
     4381 aggataaagc ggtcagcaaa gagaccctct gctgcacctg tgaaacaggc cgaagagaaa
     4441 cctcagcgca cacagaatat aaactctaat gccaacatgc tacgcaaggg accagctgag
     4501 gatatgtcct ccaaacttaa tcaagctcga agcctgagtg ggcatcctga agcagcccag
     4561 atggttcgcc gagaattcca gctggattta gatgagattg aaaatgataa tggtacagtc
     4621 cgctgtgaaa tgccagagct tgtccagcac aaacttgatg acatttttga acctgtcctt
     4681 attcctgaac ctaagatccg ggctgtttct ccacattttg atgacatgca cagtaataca
     4741 gcatccacaa tcaatttcat tatctcccaa gtagccagtg gtgacatcaa cacaagcatc
     4801 caagctctga cacagattga tgaggtcctg aggcaggaag acaaagctga agctatgtct
     4861 ggccacattg atcagtttct gatagcaaca ttcatgcagc taagactcat ctacagcaca
     4921 cacatggcag atgagaagtt ggacaaggat gaaatcatca agttgtatag ctgtatcatt
     4981 ggcaacatga tttcgctatt tcagatagag agcttggccc gggaggcctc cactggagta
     5041 ctgaaagacc tgatgcatgg actgatcacc ttaatgctgg attctcggat tgaagatctg
     5101 gaggaaggac aacaggtgat tcgttctgtg aacctcttgg tggtgaaggt tttggagaaa
     5161 tcagaccaga ccaatatcct cagtgccctg cttgttttac ttcaggacag cctgctagca
     5221 acagctagtt ctcccaaatt ctcagagctt gttatgaagt gtctatggag aatggttcga
     5281 ctattacctg acaccatcaa cagcattaac ctagacagaa ttcttctgga catccacatt
     5341 ttcatgaagg tctttcccaa agagaaattg aagcaatgca aaagtgaatt tcctataagg
     5401 actctaaaga cccttctaca tactttatgc aaattaaaag gacctaaaat cctagaccac
     5461 cttacaatga ttgataataa gaatgagtca gaattggagg cccacctgtg tcggatgatg
     5521 aagcatagta tggaccagac tgggagcaag tctgataagg aaacagaaaa gggagcttct
     5581 cgaatagatg aaaaatcatc aaaggccaaa gtaaatgatt tcttagctga gatttttaag
     5641 aagattggct ccaaagagaa cactaaggag ggcctagcag agttatatga atataagaag
     5701 aaatattcag atactgacat tgaaccattt ctgaaaaatt cctcgcagtt ctttcagagt
     5761 tatgttgaga gaggccttcg ggtgattgag atggagagag aaagcaaagg ccggattcct
     5821 acttcaacag gcatttcccc tcagatggag gtcacatgtg tgcccacccc cacaagcaca
     5881 gtgtcctccc taggtaacac aaatggagaa gaagtggggc catctgtcta cttggaaagg
     5941 ctaaaaattc tgcggcagcg gtgtggtctt gacaacacaa agcaagatga ccggcctcca
     6001 ctgacctctt tgctctccaa accagcaatt cctccagttg cctcctccac agacatgctc
     6061 catagcaagc tctcacagct ccgggagtcc cgggaacagc accagcactc agacctggat
     6121 tccaaccaga cccactctgc aggaaccatg acctcctcct cctccacaac taacattgat
     6181 gacttgaaaa agagactgga gagaataaag agcagtcgca aatgaagctg cccaccctcg
     6241 gcactctgca gctttagtta ctgatctaga agccctgtag tgtgaagcgg ccgctgcagg
     6301 ccattgtaca caaactggtt gtatgtatca gactgcagat gggaggagca gtggtgcctc
     6361 aagtctgcac atgctctgct tctagaagac tgactgtgga ttagcttagt gtacagactt
     6421 taaacagctg ctccctcagc tcagagtagg ttccatatcc tttttttttg ttttgtttta
     6481 atggctcatt tgtaaaattg tcctaatttt tcctagcttt cagccattag aaactctttt
     6541 aatagttcct tttgagttgt gagctcttct tctgtagccc tgaagggaca ctgtattctg
     6601 tatgaatgca tggcatgaga caactaattt aagagacttt tataaataaa gtttgcatta
     6661 actata
//
