LOCUS       NM_028522               1072 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus ciliary microtubule inner protein 4 (Cimip4),
            transcript variant 2, mRNA.
ACCESSION   NM_028522 XM_181371 XM_911673
VERSION     NM_028522.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Xia,M., Xia,J., Niu,C., Zhong,Y., Ge,T., Ding,Y. and Zheng,Y.
  TITLE     Testis-expressed protein 33 is not essential for spermiogenesis and
            fertility in mice
  JOURNAL   Mol Med Rep 23 (5) (2021)
   PUBMED   33760102
  REMARK    GeneRIF: Testis-expressed protein 33 is not essential for
            spermiogenesis and fertility in mice.
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Park,S., Shimada,K., Fujihara,Y., Xu,Z., Shimada,K., Larasati,T.,
            Pratiwi,P., Matzuk,R.M., Devlin,D.J., Yu,Z., Garcia,T.X.,
            Matzuk,M.M. and Ikawa,M.
  TITLE     CRISPR/Cas9-mediated genome-edited mice reveal 10 testis-enriched
            genes are dispensable for male fecundity
  JOURNAL   Biol Reprod 103 (2), 195-204 (2020)
   PUBMED   32561905
REFERENCE   3  (bases 1 to 1072)
  AUTHORS   Zhu,Z., Zhang,X., Zeng,W., Zhao,S., Zhou,J., Zhou,Z. and Liu,M.
  TITLE     Spermatogenesis is normal in Tex33 knockout mice
  JOURNAL   PeerJ 8, e9629 (2020)
   PUBMED   32821546
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1072)
  AUTHORS   McClintock,T.S., Glasser,C.E., Bose,S.C. and Bergman,D.A.
  TITLE     Tissue expression patterns identify mouse cilia genes
  JOURNAL   Physiol Genomics 32 (2), 198-206 (2008)
   PUBMED   17971504
  REMARK    GeneRIF: 1700061J05Rik is most abundantly expressed in tissues rich
            in highly ciliated cells, such as olfactory sensory neurons, and is
            predicted to be important to cilia.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ047876.1 and AK006856.1.
            
            On or before Jul 29, 2009 this sequence version replaced
            XM_911673.3, XM_181371.8.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants 1 and 2 encode the same isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK006856.1, SRR5189685.55981.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-27                CJ047876.1         2-28
            28-1072             AK006856.1         2-1046
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 37.45 cM"
     gene            1..1072
                     /gene="Cimip4"
                     /gene_synonym="1700061J05Rik; Ean57; Tex33"
                     /note="ciliary microtubule inner protein 4"
                     /db_xref="GeneID:73376"
                     /db_xref="MGI:MGI:1920626"
     exon            1..70
                     /gene="Cimip4"
                     /gene_synonym="1700061J05Rik; Ean57; Tex33"
                     /inference="alignment:Splign:2.1.0"
     exon            71..163
                     /gene="Cimip4"
                     /gene_synonym="1700061J05Rik; Ean57; Tex33"
                     /inference="alignment:Splign:2.1.0"
     exon            164..224
                     /gene="Cimip4"
                     /gene_synonym="1700061J05Rik; Ean57; Tex33"
                     /inference="alignment:Splign:2.1.0"
     exon            225..655
                     /gene="Cimip4"
                     /gene_synonym="1700061J05Rik; Ean57; Tex33"
                     /inference="alignment:Splign:2.1.0"
     exon            656..800
                     /gene="Cimip4"
                     /gene_synonym="1700061J05Rik; Ean57; Tex33"
                     /inference="alignment:Splign:2.1.0"
     exon            801..911
                     /gene="Cimip4"
                     /gene_synonym="1700061J05Rik; Ean57; Tex33"
                     /inference="alignment:Splign:2.1.0"
     exon            912..1072
                     /gene="Cimip4"
                     /gene_synonym="1700061J05Rik; Ean57; Tex33"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1049..1054
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cimip4"
                     /gene_synonym="1700061J05Rik; Ean57; Tex33"
                     /note="hexamer: AATAAA"
     polyA_site      1069
                     /gene="Cimip4"
                     /gene_synonym="1700061J05Rik; Ean57; Tex33"
                     /note="major polyA site"
ORIGIN      
        1 agtaacccac tggtcctctt gggtagcagt gctactctgt ctgaccctcc agagtggttc
       61 acctggggag agctgctgct cgtgagtgcc aggtgcccag gctgcagttg cacgcaatct
      121 cccgccatcc ttggcttaca cctcgaagga ctttgctctt cagggccaag ctcagacatt
      181 acggagccca gagccagagg cgatggagct gagccaccga caaggtacaa ccacgttgac
      241 aaggacacac ccgaacgaca aggagggcca gcaggacatg aactccttca gagctaacca
      301 tagctccttg gacaactcca aatttaagta ccatgcaagg ctctcccaga gccccttagg
      361 cagctccctg ggccagggct acctggagac tccacctcta ccaccaactc ctacctgcag
      421 gacttctctg gctatgaact cccatcctga ggacctgaag aagggggcat ccagatccag
      481 ctcgagagat gccagggaga ccttccgaga gggatgtgtc ggggaggaag gccaagactc
      541 caggtcccca gagcagagga cagtgcctct gagcaagaag gacagcgtca ttcctgagaa
      601 catccgccac aaatttggga gcaagatggt ggaccaactg atctctgagg atcaggctcg
      661 acaggccatt ggtgaaatgt ttgagggcca gaagaggcca agctcatggc ctagcaggac
      721 ccagagcccc atgcaagcct cctccatttt ctcagactac tatgacctgg gctaccacat
      781 gcgatccaac ttgtttcaag gcccacccca ggagacaaag agcctcatga aggcttccta
      841 cacgcccgag gtgatagaga agtcggtgag ggatgtggaa cactggcacg ggaggaagac
      901 ggatgacctg ggccggtggc accggaagaa tgctatgaac atgaacttgc agaaagcgct
      961 ggaagagaaa tacggagaga agagcagatc caaggccaag tagttgaaag gacattggga
     1021 ggaagcttga gaatgttgcc aataaagaaa taaaggctgt ggtctgccac tg
//
