LOCUS       NM_028158                641 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus ciliary microtubule inner protein 1 (Cimip1), mRNA.
ACCESSION   NM_028158 XM_884453 XM_913802
VERSION     NM_028158.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Fujimoto,M., Oshima,K., Shinkawa,T., Wang,B.B., Inouye,S.,
            Hayashida,N., Takii,R. and Nakai,A.
  TITLE     Analysis of HSF4 binding regions reveals its necessity for gene
            regulation during development and heat shock response in mouse
            lenses
  JOURNAL   J Biol Chem 283 (44), 29961-29970 (2008)
   PUBMED   18755693
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CN835193.1, BC050790.1 and AL807384.5.
            
            On or before Jul 24, 2009 this sequence version replaced
            XM_913802.2, XM_884453.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC050790.1, CN831689.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-8                 CN835193.1         1-8
            9-633               BC050790.1         1-625
            634-641             AL807384.5         150604-150611
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 96.88 cM"
     gene            1..641
                     /gene="Cimip1"
                     /gene_synonym="1700021F07Rik"
                     /note="ciliary microtubule inner protein 1"
                     /db_xref="GeneID:72221"
                     /db_xref="MGI:MGI:1919471"
     exon            1..140
                     /gene="Cimip1"
                     /gene_synonym="1700021F07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             73..483
                     /gene="Cimip1"
                     /gene_synonym="1700021F07Rik"
                     /note="uncharacterized protein C20orf85 homolog"
                     /codon_start=1
                     /product="ciliary microtubule inner protein 1"
                     /protein_id="NP_082434.1"
                     /db_xref="CCDS:CCDS50814.1"
                     /db_xref="GeneID:72221"
                     /db_xref="MGI:MGI:1919471"
                     /translation="MAQKPLSTTAAERMNLVAQDEIWKYRLRAESEARQNWPAKWGYL
                     TTSMKELLEGEEEPQTPKPKPELPSHFYVRPVSPMDKHIKILPSPPVPKTTQGFIGWR
                     SGKPALYCLEKYSEVCSCKGAYARELCWPEQGVH"
     exon            141..222
                     /gene="Cimip1"
                     /gene_synonym="1700021F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            223..324
                     /gene="Cimip1"
                     /gene_synonym="1700021F07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            325..641
                     /gene="Cimip1"
                     /gene_synonym="1700021F07Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      619..624
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cimip1"
                     /gene_synonym="1700021F07Rik"
                     /note="hexamer: AATAGA"
     polyA_site      638
                     /gene="Cimip1"
                     /gene_synonym="1700021F07Rik"
                     /note="major polyA site"
ORIGIN      
        1 gggactataa ttaaggactc atagtctaag gcaggagcac acgggtttgg gtttgcggag
       61 accgcgggag ccatggcgca gaaaccgctc agcaccacgg ccgcagagcg catgaacctt
      121 gtggcccagg atgagatttg gaaataccgt ctgagggccg aaagtgaagc ccggcaaaac
      181 tggccggcca agtggggata tttaacaacg tccatgaaag agctgcttga gggtgaagag
      241 gagccacaaa ccccgaagcc caagcctgag ctgcctagcc acttctatgt ccgtccagtg
      301 agccccatgg ataaacacat caagattctc ccatcgcccc cagtcccaaa gaccacccag
      361 ggcttcatcg gatggcgatc cgggaagcca gccctgtact gtttggagaa gtactcagag
      421 gtttgcagct gcaaaggggc ttatgcccga gagctatgct ggcccgagca aggcgtgcac
      481 tgagcaacac catcctctgc ctcagacagg gtgtgtgctg tgcctgggtg agcatccttg
      541 atactttgaa gaaccacagt ttgctgtagg cactgccatt tgttggtgct tctggcattc
      601 ttggctaacc taaggtaaaa tagataccct gactcatttc c
//
