LOCUS       NM_001033473            1248 bp    mRNA    linear   ROD 09-FEB-2025
DEFINITION  Mus musculus CIMAP1 family member D (Cimap1d), mRNA.
ACCESSION   NM_001033473 XM_356476 XM_910262
VERSION     NM_001033473.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1248)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1248)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   3  (bases 1 to 1248)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK158063.1.
            
            On Apr 6, 2007 this sequence version replaced NM_001033473.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK158063.1, BC147356.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN01164137
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1248              AK158063.1         2-1249
FEATURES             Location/Qualifiers
     source          1..1248
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 39.72 cM"
     gene            1..1248
                     /gene="Cimap1d"
                     /gene_synonym="Gm1157; Odf3l2"
                     /note="CIMAP1 family member D"
                     /db_xref="GeneID:382384"
                     /db_xref="MGI:MGI:2686003"
     exon            1..172
                     /gene="Cimap1d"
                     /gene_synonym="Gm1157; Odf3l2"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..879
                     /gene="Cimap1d"
                     /gene_synonym="Gm1157; Odf3l2"
                     /note="outer dense fiber protein 3-like protein 2; outer
                     dense fiber of sperm tails 3-like 2"
                     /codon_start=1
                     /product="protein CIMAP1D"
                     /protein_id="NP_001028645.1"
                     /db_xref="CCDS:CCDS23980.1"
                     /db_xref="GeneID:382384"
                     /db_xref="MGI:MGI:2686003"
                     /translation="MGTLSCDPEARLTTVPLARRVADGHIPETGLRKSCGIATLENGS
                     GPGLYVLPSTVGYVNHDCTKAASPAYSLARRPSEAPLQDSSPGPVYFLDPKVTRFGRS
                     CPPAYSMQGRAKVRGLEVTPGPGAYSPEKAPPVRQRNAPAFTLGSRLRQKPPDTSVPA
                     PNAYTMPPLWGSQIFIKPSSPSYTVVGRTPPARPPQDPSEIPGPGQYESPDPNTYRQR
                     RPAFSILGRPRTPRPLEDTPGPGTHNPEQVTVNRARAPAYTMGIRHSKRASTMVGDTK
                     C"
     exon            173..280
                     /gene="Cimap1d"
                     /gene_synonym="Gm1157; Odf3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            281..394
                     /gene="Cimap1d"
                     /gene_synonym="Gm1157; Odf3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            395..1248
                     /gene="Cimap1d"
                     /gene_synonym="Gm1157; Odf3l2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accagagtag caggacacag gaacccacac gaggtcctgt tcaccatggg gaccctcagc
       61 tgcgacccag aggctaggct gaccacagta cccctggccc ggcgggtggc tgatggacac
      121 attccggaga ccgggctgag aaaatcctgt ggaattgcca ccttggagaa tggctccgga
      181 cctggcttgt atgttcttcc gtccaccgtt ggctatgtca atcacgattg taccaaggca
      241 gccagtcctg cctactccct cgctcggagg cccagtgaag cacctctcca ggattccagc
      301 ccaggacctg tctacttctt ggacccgaaa gttactcgct ttggccgtag ctgtccccct
      361 gcctactcca tgcagggccg ggccaaggtc agaggtctgg aggtgacacc aggacctggg
      421 gcctacagcc cagagaaggc acccccagta cgccagcgga atgccccagc tttcactctg
      481 ggctctcgcc tccgacagaa gcctccagac acctctgttc ctgcccccaa tgcctacacc
      541 atgccacccc tctggggatc gcagatcttt atcaaaccca gcagtcccag ctacacagtt
      601 gtgggccgca caccccctgc acgtccccct caggatcctt cagagattcc aggccctggg
      661 cagtatgaga gtccggaccc caacacctac cggcagcgta ggccggcctt cagcatactg
      721 gggagacctc ggacaccacg gcccctggag gacacacctg gtcctggtac ccacaaccca
      781 gaacaggtca ctgttaaccg ggcccgggcc ccggcatata ccatgggcat ccgtcactca
      841 aagcgggcat ccaccatggt aggggacacc aaatgctgac agctgcaggg cacaggcagc
      901 cggggcctct cctgggccgt ttcctcagag tggaacagag gaggtgcctc cctccccgtc
      961 ttcagtccga ggtcctttga ggccacctga tctttctgtc cctggggcct gtgacccaag
     1021 tctccataga gggtgaggtt gagcctcctt cccaggtcag accaggccag ggagaagtgt
     1081 ccctttccct ggctggacat ggagccgtgt gtcctagaat tcagtgtcca ggccgcttgg
     1141 gtttctgcag atgaggccgg agaactctcc tggaggtggc cctgcagtct ctgcccttct
     1201 caccccaccc tttagagttg cttgccaata aatcattcct ccgtcaac
//
