LOCUS       NM_001374681            2302 bp    mRNA    linear   ROD 04-AUG-2024
DEFINITION  Mus musculus ciliary microtubule associated protein 1C (Cimap1c),
            transcript variant 1, mRNA.
ACCESSION   NM_001374681 XM_017313443
VERSION     NM_001374681.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2302)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2302)
  AUTHORS   Zambrowicz,B.P., Abuin,A., Ramirez-Solis,R., Richter,L.J.,
            Piggott,J., BeltrandelRio,H., Buxton,E.C., Edwards,J., Finch,R.A.,
            Friddle,C.J., Gupta,A., Hansen,G., Hu,Y., Huang,W., Jaing,C.,
            Key,B.W. Jr., Kipp,P., Kohlhauff,B., Ma,Z.Q., Markesich,D.,
            Payne,R., Potter,D.G., Qian,N., Shaw,J., Schrick,J., Shi,Z.Z.,
            Sparks,M.J., Van Sligtenhorst,I., Vogel,P., Walke,W., Xu,N.,
            Zhu,Q., Person,C. and Sands,A.T.
  TITLE     Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap
            screen to identify potential targets for therapeutic intervention
  JOURNAL   Proc Natl Acad Sci U S A 100 (24), 14109-14114 (2003)
   PUBMED   14610273
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC126257.4.
            
            On Oct 9, 2019 this sequence version replaced XM_017313443.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR6116558.64456.1,
                                           SRR11927934.7309658.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1315              AC126257.4         68061-69375         c
            1316-1444           AC126257.4         67217-67345         c
            1445-1555           AC126257.4         66301-66411         c
            1556-1669           AC126257.4         65515-65628         c
            1670-2302           AC126257.4         64220-64852         c
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 30.28 cM"
     gene            1..2302
                     /gene="Cimap1c"
                     /gene_synonym="Gm1116; Odf3l1"
                     /note="ciliary microtubule associated protein 1C"
                     /db_xref="GeneID:382075"
                     /db_xref="MGI:MGI:2681875"
     exon            1..1315
                     /gene="Cimap1c"
                     /gene_synonym="Gm1116; Odf3l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             1231..2151
                     /gene="Cimap1c"
                     /gene_synonym="Gm1116; Odf3l1"
                     /note="isoform 1 is encoded by transcript variant 1; outer
                     dense fiber protein 3-like protein 1; outer dense fiber of
                     sperm tails 3-like 1; protein CIMAP1C"
                     /codon_start=1
                     /product="protein CIMAP1C isoform 1"
                     /protein_id="NP_001361610.1"
                     /db_xref="CCDS:CCDS90577.1"
                     /db_xref="GeneID:382075"
                     /db_xref="MGI:MGI:2681875"
                     /translation="MGTYCCGPQCEPFIILLVPHTVSGTLPLAFTMKQSKGSRNYVFY
                     AQHPEKEEEVPSWHEIKQTPVIMATIKGPGPAKYLRSSCTGYIAHDISMFQEPAYSLH
                     TRHTKKRIIDINSPGPCYFLNPKVTRFGISTCPQVPMEERISNPRINCMPASCKYNLE
                     KTRPSGERQPPQYTFGYRCPYRVMDPNPAPNQYQLPVTLGTNIPVFRAAPSYSLASTN
                     KNWFHKENIAGGPGPAMHTRPEPSVYQNRSPLFSMAKRFGCPLDHTHRPGPGSHDIQP
                     VTVHKPRIPAFTMGIKHSPHLCPLIVDICD"
     exon            1316..1444
                     /gene="Cimap1c"
                     /gene_synonym="Gm1116; Odf3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1445..1555
                     /gene="Cimap1c"
                     /gene_synonym="Gm1116; Odf3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1556..1669
                     /gene="Cimap1c"
                     /gene_synonym="Gm1116; Odf3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1670..2302
                     /gene="Cimap1c"
                     /gene_synonym="Gm1116; Odf3l1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2281..2286
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cimap1c"
                     /gene_synonym="Gm1116; Odf3l1"
                     /note="hexamer: GATAAA"
     polyA_site      2302
                     /gene="Cimap1c"
                     /gene_synonym="Gm1116; Odf3l1"
                     /note="major polyA site"
ORIGIN      
        1 tgggtaggaa ctgcatggag gtccagtctt atggagggga gtgaggcatg ctgggatagt
       61 atctggggac agcagagcaa gctgcttcta ggtgaggctc aatgaggttg ccaaatccaa
      121 ggctgagagc tctgagggtg aggaggagga ggaggaagag gaggaggagg aagaggcagg
      181 agctcattgg tctggtacat aaagactgct ggggagtagg aaacggaggg ctctttctag
      241 ggaggtggca gttggtgttg tgggaggtaa taaaagccca ggaccactgc tgggaacagg
      301 gtttgggagg gacttggcag aggtcttggt gcatgaggag gactgtgcat tgattgggga
      361 gtgggtctta ggtgggccaa agttaccaag tcatggtagg agttaggagg tagccatgaa
      421 ccagggctgc caccgtgttg tgaggaacag gtggatactg gaactcatgt gaccaaggcc
      481 gtgaatggaa gagctatcat cttgggcctg aagcagccaa ggggcctgct tcaggggatc
      541 ccagactcca tcagaggcag agtgcatgcc acagaagtga gcaacttggg ccagctgaag
      601 gtgaagaaac ccatttcctc aagaaagctg tgtatgaagg cctgtgacag gaacagaaca
      661 gacccctggg aaggaagcac ttggagtacc accaggcagg ggagaggggg tggcccggag
      721 tgcttacagg gtggggtgaa atgagacgtg gtccccagca gaggggctgc tgctggtggc
      781 tgggagcctg ctctgttctg agcctttctg tccccaagac tcttgacttc ccagcatgcc
      841 tgatgatggc tgcacttggc ggatgcctag agttcagagc accacaatgg cagctctctg
      901 aacagtgaga ctgacctgaa gagattcctg cattttgtgt tctgcttcct ctcctgtcac
      961 tgtggcctca gtgtctacac tggggtggtg acagactacc attcatcctt taattcctat
     1021 gacagacaga gacctttctt aacctggctc agatctaatc ccagtggtgg atgtaaggct
     1081 gggtcctggg tccctctggg ctcttaggct gaagccatct ctgggatttt cctagactgg
     1141 ggctcatccc tctgtcacat ggagactgca tagcctctga cactcatatt tcctaacatc
     1201 ctccttcaga ggtgtgctct ctacaaagtc atgggaacct actgctgtgg accccagtgt
     1261 gagcccttta tcatcctgct tgttccccac actgtgtctg gaacactacc attagccttc
     1321 actatgaagc agtccaaggg gtccaggaac tatgtgttct acgcacagca cccagagaag
     1381 gaggaagagg tgccctcatg gcatgaaatc aagcagaccc ctgtcatcat ggccacaatc
     1441 aaaggtccag ggcctgccaa gtacctccgg tcatcctgta ctggctatat agcccatgac
     1501 atctccatgt tccaggagcc agcttacagt ctgcatacac ggcacactaa gaaacggatc
     1561 atagacataa acagccccgg accttgctat ttcttgaatc ccaaagtaac tcgttttgga
     1621 atatccacct gcccccaggt ccccatggag gagcgcatct ccaatccacg cataaattgc
     1681 atgccagcct cctgcaagta caaccttgag aagactcgac cctctgggga acgtcagcct
     1741 ccccagtaca cttttggcta ccggtgtcca tatagagtga tggatcccaa ccctgctcct
     1801 aaccagtacc agctgccagt cactctgggg accaacatcc ctgtcttccg agctgcccct
     1861 tcctatagtc tggcttccac aaacaagaat tggttccaca aggagaatat agcaggaggt
     1921 cccggacctg ctatgcatac ccgacctgag ccatccgtct accagaaccg cagccctttg
     1981 tttagcatgg ccaagcgctt tggctgtcct ttggaccaca cgcatcggcc tggccctggc
     2041 tcccacgaca tccagccggt cactgtgcac aaaccccgca tacctgcctt caccatgggc
     2101 atcaaacatt caccccactt gtgcccactg attgtggaca tttgtgactg aggtctctgc
     2161 tgttgcatgc tcctccctcc tgcctcacat gctattttcc tagaacacat tgagcaactt
     2221 gaccgtggat tctggtagca gagctggtgc ctgctgagtg gccagaatgc agaggcattg
     2281 gataaatatt tttgtttatt ca
//
