LOCUS       NM_001402877            1061 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ciliary microtubule associated protein 1B (Cimap1b),
            transcript variant 3, mRNA.
ACCESSION   NM_001402877
VERSION     NM_001402877.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Stauber,M., Weidemann,M., Dittrich-Breiholz,O., Lobschat,K.,
            Alten,L., Mai,M., Beckers,A., Kracht,M. and Gossler,A.
  TITLE     Identification of FOXJ1 effectors during ciliogenesis in the foetal
            respiratory epithelium and embryonic left-right organiser of the
            mouse
  JOURNAL   Dev Biol 423 (2), 170-188 (2017)
   PUBMED   27914912
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC113976.13.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422603.59199.1,
                                           SRR13422601.1802604.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-348               AC113976.13        156728-157075       c
            349-552             AC113976.13        156430-156633       c
            553-657             AC113976.13        156119-156223       c
            658-779             AC113976.13        155884-156005       c
            780-920             AC113976.13        155516-155656       c
            921-1061            AC113976.13        155233-155373       c
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 44.86 cM"
     gene            1..1061
                     /gene="Cimap1b"
                     /gene_synonym="2010001J22Rik; Odf3b"
                     /note="ciliary microtubule associated protein 1B"
                     /db_xref="GeneID:70113"
                     /db_xref="MGI:MGI:1917363"
     exon            1..348
                     /gene="Cimap1b"
                     /gene_synonym="2010001J22Rik; Odf3b"
                     /inference="alignment:Splign:2.1.0"
     CDS             114..1004
                     /gene="Cimap1b"
                     /gene_synonym="2010001J22Rik; Odf3b"
                     /note="isoform 3 is encoded by transcript variant 3; outer
                     dense fiber protein 3B; outer dense fiber protein 3-like
                     protein 3; outer dense fiber of sperm tails 3B"
                     /codon_start=1
                     /product="ciliary microtubule associated protein 1B
                     isoform 3"
                     /protein_id="NP_001389806.1"
                     /db_xref="GeneID:70113"
                     /db_xref="MGI:MGI:1917363"
                     /translation="MGSEVWVGTWRPHRPRGPIAALYRGPGPKYKLPTNTGSKGGCRG
                     GNWEGGTVGGLHWCQEAKELENCARSKKGGQKIRGYKLHDPSRPRAPAFSFGSRPPLR
                     HATCGPGPSYLVPARMTVRGTVGSPAFSIYGRLSHTAPVLTPGPGRYYPERARNVTYP
                     SAPRHTIAPRNWGILAKQETPGPGSYTVPSLLGSRVISKVSAPTYSIYSRSPVGSCFE
                     DLSKTPGPCAYHVVNPMIYKTRAPQFTMLGRTLPPRENTKKPGPASYSVDKHRKPCGW
                     SFGIRHSDYLAPMIQYHVDD"
     exon            349..552
                     /gene="Cimap1b"
                     /gene_synonym="2010001J22Rik; Odf3b"
                     /inference="alignment:Splign:2.1.0"
     exon            553..657
                     /gene="Cimap1b"
                     /gene_synonym="2010001J22Rik; Odf3b"
                     /inference="alignment:Splign:2.1.0"
     exon            658..779
                     /gene="Cimap1b"
                     /gene_synonym="2010001J22Rik; Odf3b"
                     /inference="alignment:Splign:2.1.0"
     exon            780..920
                     /gene="Cimap1b"
                     /gene_synonym="2010001J22Rik; Odf3b"
                     /inference="alignment:Splign:2.1.0"
     exon            921..1061
                     /gene="Cimap1b"
                     /gene_synonym="2010001J22Rik; Odf3b"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1061
                     /gene="Cimap1b"
                     /gene_synonym="2010001J22Rik; Odf3b"
                     /note="major polyA site"
ORIGIN      
        1 atacgcgtta gctttgtcct cggtcctgct ggtccacagt ggagctgggg aagtgtgtct
       61 cctaggaatt ccttccacag gtgctgcaag ccataagcgc ccccaccagc gctatgggct
      121 cagaagtctg ggtcggcact tggcggccac atcggccccg cggccccatc gcggcgctct
      181 acagaggccc ggggccaaaa tacaagctgc caacgaacac cggtagcaag ggcggatgca
      241 ggggaggaaa ctgggaaggt gggactgtgg gcggtctaca ctggtgccag gaggccaagg
      301 aactggagaa ctgtgcccga agcaaaaagg gagggcagaa gattagaggt tacaaactgc
      361 acgacccgtc tcggccgcga gcccccgcct tctccttcgg ctcgcgtcca cccttgcggc
      421 atgcaacctg cggacccggg ccgagttacc tggtgcctgc tcgcatgact gtgcgcggca
      481 cagttggctc cccggccttc tccatctacg gtcgcctaag ccacacggcg cctgtcctca
      541 ctccgggacc gggcaggtac tacccagaac gcgcgagaaa tgtgacgtac cccagcgctc
      601 ctcggcatac catcgctccc cgaaactggg gcatcctcgc aaagcaagaa accccaggcc
      661 ctgggtccta caccgtgcct tcgctcttgg gctcacgagt cataagcaaa gtctcagccc
      721 caacttactc catctacagc cgcagccctg tgggcagctg cttcgaggac ctcagcaaga
      781 ccccaggccc ttgtgcctac cacgtagtga atcctatgat ctacaagact cgagccccgc
      841 agttcacgat gctggggagg actctgccac cccgagagaa caccaagaag ccaggacctg
      901 catcctacag cgtggacaag caccggaagc cttgtggctg gagcttcggg atcagacact
      961 cagactacct agcccccatg atacagtacc acgtggacga ctgatgcctg caagcacgcg
     1021 cgcacaggct ctgggttgtt tacttaaagc tttctaagtc a
//
