LOCUS       XM_006521724            3380 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus class II transactivator (Ciita), transcript
            variant X1, mRNA.
ACCESSION   XM_006521724
VERSION     XM_006521724.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000082.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006521724.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3380
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="16"
     gene            1..3380
                     /gene="Ciita"
                     /gene_synonym="C2ta; EG669998; Gm9475; Mhc2ta"
                     /note="class II transactivator; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:12265"
                     /db_xref="MGI:MGI:108445"
     CDS             132..3353
                     /gene="Ciita"
                     /gene_synonym="C2ta; EG669998; Gm9475; Mhc2ta"
                     /codon_start=1
                     /product="MHC class II transactivator isoform X1"
                     /protein_id="XP_006521787.1"
                     /db_xref="GeneID:12265"
                     /db_xref="MGI:MGI:108445"
                     /translation="MNHFQAILAQVQTLLSSQKPRQVRALLDGLLEEELLSREYHCAL
                     LHEPDGDALARKISLTLLEKGDLDLTFLSWVCNSLQAPTVERGTSYRDHGDHSLCATM
                     DLGSPEGSYLELLNSDADPLHLYHLYDQMDLAGEEEIELSSEPDTDTINCDQFSKLLQ
                     DMELDEETREAYANIAELDQYVFQDTQLEGLSKDLFIEHIGAEEGFGENIEIPVEAGQ
                     KPQKRRFPEEHAMDSKHRKLVPTSRTSLNYLDLPTGHIQIFTTLPQGLWQISGAGTGL
                     SSVLIYHGEMPQVNQVLPSSSLSIPSLPESPDRPGSTSPFTPSAADLPSMPEPALTSR
                     VNETEDTSPSPCQEGPESSIKLPKWPEAVERFQHSLQDKYKALPQSPRGPLVAVELVR
                     ARLERGSNKSQERELATPDWTERQLAHGGLAEVLQVVSDCRRPGETQVVAVLGKAGQG
                     KSHWARTVSHTWACGQLLQYDFVFYVPCHCLDRPGDTYHLRDLLCPPSLQPLAMDDEV
                     LDYIVRQPDRVLLILDAFEELEAQDGLLHGPCGSLSPEPCSLRGLLAGIFQRKLLRGC
                     TLLLTARPRGRLAQSLSKADAIFEVPSFSTKQAKTYMRHYFENSGTAGNQDKALGLLE
                     GQPLLCSYSHSPVVCRAVCQLSKALLEQGTEAQLPCTLTGLYVSLLGPAAQNSPPGAL
                     VELAKLAWELGRRHQSTLQETRFSSVEVKTWAVTQGLMQQTLETTEAQLAFSSFLLQC
                     FLGAVWLAQCNEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLVFQPRAHCLGAL
                     VEPAVAAVADRKQKVLTRYLKRLKLGTLRAGRLLELLHCAHETQQPGIWEHVAHQLPG
                     HLSFLGTRLTPPDVYVLGRALETASQDFSLDLRQTGVEPSGLGNLVGLSCVTSFRASL
                     SDTMALWESLQQQGEAQLLQAAEEKFTIEPFKAKSPKDVEDLDRLVQTQRLRNPSEDA
                     AKDLPAIRDLKKLEFALGPILGPQAFPTLAKILPAFSSLQHLDLDSLSENKIGDKGVS
                     KLSATFPQLKALETLKAGYHGCVATVPCEAASFQPVRKGEPST"
ORIGIN      
        1 aacattccta agaaggagaa ggctacactg acaacagagg ttccttcatc ctgggtctca
       61 cttcatgttt tggatgctgc aaggctggat gagaggcgac tccaggcagc aggcagcctc
      121 agagcactgc catgaaccac ttccaggcca tcctggccca agtacagaca ctgctctcca
      181 gccagaagcc caggcaggtg cgggccctcc tggatggcct gctggaagaa gagctgctct
      241 cacgggaata ccactgtgcc ttgctgcatg agcctgatgg tgatgccctg gcccggaaga
      301 tttccctgac cctgctggag aaaggggact tagacttgac tttcttgagc tgggtctgca
      361 acagtctgca ggctcccacg gtagagaggg gcaccagcta cagggaccat ggagaccata
      421 gtctgtgtgc caccatggat ctgggatctc cagagggcag ctacctggaa ctccttaaca
      481 gtgatgccga ccccctacat ctctaccacc tctatgacca gatggacctg gctggggagg
      541 aggagatcga actcagctca gagccagaca cagataccat caactgcgac cagttcagca
      601 agctgttgca ggacatggaa ctggatgaag agacccggga ggcctatgcc aacattgcgg
      661 aactggatca gtacgtgttc caggataccc agctcgaggg cctgagcaag gacctcttca
      721 tagagcacat tggagcagag gaaggctttg gtgagaacat agagatccct gtagaagcag
      781 gacagaagcc tcagaagaga cgcttcccgg aagagcatgc tatggactca aagcacagga
      841 agctagtgcc cacctctagg acctcactga actatttgga tctccccact gggcacatcc
      901 agatcttcac cactctgccc cagggactct ggcaaatctc aggggctggc acaggtctct
      961 ccagtgtcct aatctaccac ggtgagatgc cccaggtcaa ccaagtgctc ccttcaagca
     1021 gcctcagtat ccccagtctc cccgagtccc cagaccggcc tggctccacc agccccttca
     1081 caccatctgc agctgacctg cccagcatgc ccgaacctgc gctgacctcc cgtgtaaatg
     1141 agacagagga cacatctccc tccccatgcc aagagggtcc cgagtcttcc atcaagcttc
     1201 caaaatggcc agaggctgtg gagcgattcc agcactccct acaggacaaa tacaaggcat
     1261 tgccccagag cccaaggggt cctctggtgg ccgtggagct ggtacgggcc aggctggaaa
     1321 gaggcagcaa caagagccag gaaagggagc tggccactcc cgactggaca gagcgccagc
     1381 tagcccacgg tggtctggca gaggtacttc aggttgtcag tgactgcagg cgaccaggag
     1441 agacacaggt ggtcgctgtg ctgggcaagg ctggccaggg aaagagccac tgggccagga
     1501 cagtgagtca cacctgggca tgtggccagt tgctacaata tgactttgtc ttctatgtcc
     1561 cctgtcattg cttggatcgt cccggggaca cctaccacct gcgggatctg ctctgtcccc
     1621 cgagcctgca gccactggcc atggatgacg aggtccttga ttatatcgtg aggcagccag
     1681 accgtgttct gctcatccta gatgctttcg aggagctaga ggcccaagat ggcctcctgc
     1741 acggaccctg tggatctctg tccccagagc cctgctccct ccgaggactg ctggctggga
     1801 tcttccagcg gaagctactg cgaggctgca cactgctcct cacagcccgg ccccggggcc
     1861 gcctggctca gagcctgagc aaggcagatg ccatctttga ggtgcccagc ttctctacca
     1921 agcaggccaa gacttacatg aggcactact ttgagaactc agggacagcg gggaaccaag
     1981 acaaggccct gggcctcctg gagggccagc ctcttctctg cagctatagt cacagccctg
     2041 ttgtgtgcag ggctgtgtgc cagctctcca aggccctgct agaacagggc acagaggccc
     2101 agctaccttg tacacttaca ggactctatg tcagcctgct aggtcctgca gctcagaaca
     2161 gtcctcccgg agccttagtc gagctggcca agctggcctg ggagctggga cgaagacacc
     2221 aaagcacctt gcaagaaacc cggttttcat ccgtggaggt gaaaacctgg gcagtgaccc
     2281 aaggcttgat gcagcagacc ctggagacca cggaggctca actggccttc tccagttttc
     2341 tgctacagtg tttcctgggt gctgtgtggc tggcacagtg caatgaaatc aaagacaagg
     2401 agctgccaca gtacctggcc ttgactccga ggaagaagag accctatgac aactggctgg
     2461 agggtgtacc acgctttctg gctggattag ttttccagcc tcgagcccac tgcctgggag
     2521 ctctggtgga gcctgcagtg gctgcagtgg cggataggaa acagaaggtt cttaccaggt
     2581 acctgaagcg cctgaagctg gggacactcc gggcagggag gctgctggag ctgctccact
     2641 gtgcccacga gacacagcaa cctgggatat gggagcatgt tgcacaccag ctccctggcc
     2701 acctctcctt cctgggcacc cggctcacac ccccagatgt gtatgtgctg ggcagggcct
     2761 tggagacagc cagccaggac ttctccttgg accttcgtca gactggcgtt gagccttctg
     2821 gactgggaaa cctcgtggga ctcagctgtg tcaccagttt cagggcctcc ttgagtgata
     2881 caatggcatt atgggagtcc cttcagcagc agggagaagc ccagctactc caggcggcag
     2941 aggagaagtt caccattgag ccatttaaag ccaaatcccc aaaggatgtg gaagacctgg
     3001 atcgtctcgt gcagacccag aggctgagaa acccctcaga agatgcagcc aaggatcttc
     3061 ctgccatccg ggaccttaag aagctagagt ttgcgttggg ccccatcttg ggcccccagg
     3121 ctttccccac actggcaaag atccttccag ccttctcttc tctgcaacac ctggacctgg
     3181 actcacttag tgagaacaag atcggagaca agggtgtgtc gaagctctca gccaccttcc
     3241 ctcagctgaa ggccctggag acgctcaagg ctggctatca tggctgtgtg gctacagtcc
     3301 cctgtgaagc agcgagtttc cagccggtga ggaagggaga gccttccact taggtcctgg
     3361 accttctcct ccctgtgtct
//
