LOCUS       NM_028483                780 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus calcium and integrin binding family member 4 (Cib4),
            transcript variant 1, mRNA.
ACCESSION   NM_028483 XM_131990 XM_908365
VERSION     NM_028483.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Xu,Z., Miyata,H., Kaneda,Y., Castaneda,J.M., Lu,Y., Morohoshi,A.,
            Yu,Z., Matzuk,M.M. and Ikawa,M.
  TITLE     CIB4 is essential for the haploid phase of spermatogenesis in
            micedagger
  JOURNAL   Biol Reprod 103 (2), 235-243 (2020)
   PUBMED   32430498
  REMARK    GeneRIF: CIB4 is essential for the haploid phase of spermatogenesis
            in micedagger.
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Giese,A.P.J., Tang,Y.Q., Sinha,G.P., Bowl,M.R., Goldring,A.C.,
            Parker,A., Freeman,M.J., Brown,S.D.M., Riazuddin,S., Fettiplace,R.,
            Schafer,W.R., Frolenkov,G.I. and Ahmed,Z.M.
  TITLE     CIB2 interacts with TMC1 and TMC2 and is essential for
            mechanotransduction in auditory hair cells
  JOURNAL   Nat Commun 8 (1), 43 (2017)
   PUBMED   28663585
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC157761.6.
            
            On Mar 10, 2023 this sequence version replaced NM_028483.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK006670.1, BC099558.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-122               AC157761.6         1456-1577
            123-157             AC157761.6         2603-2637
            158-254             AC157761.6         13017-13113
            255-396             AC157761.6         49130-49271
            397-506             AC157761.6         58709-58818
            507-595             AC157761.6         59770-59858
            596-780             AC157761.6         61536-61720
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 16.59 cM"
     gene            1..780
                     /gene="Cib4"
                     /gene_synonym="1700041E20Rik"
                     /note="calcium and integrin binding family member 4"
                     /db_xref="GeneID:73259"
                     /db_xref="MGI:MGI:1920509"
     exon            1..122
                     /gene="Cib4"
                     /gene_synonym="1700041E20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..626
                     /gene="Cib4"
                     /gene_synonym="1700041E20Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="calcium and integrin-binding family member 4
                     isoform 1"
                     /protein_id="NP_082759.1"
                     /db_xref="CCDS:CCDS51453.1"
                     /db_xref="GeneID:73259"
                     /db_xref="MGI:MGI:1920509"
                     /translation="MGQCLRYQMQWEDLEEYQALTFLTRNEILCIHDTFLKLCPSGKH
                     YKEATLTMDQVSSLPALRVNPFRDRICRVFSHDNVFSFEDVLGMASVFSEQACPSLKI
                     EYAFRIYDFNENGFIDEEDLEEIVLRLLKSDDASEDLLMDVMHHVLSESDLDNDSMLS
                     FSEFEHAMAKSPDFMNSFRIHFWGC"
     exon            123..157
                     /gene="Cib4"
                     /gene_synonym="1700041E20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            158..254
                     /gene="Cib4"
                     /gene_synonym="1700041E20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            255..396
                     /gene="Cib4"
                     /gene_synonym="1700041E20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            397..506
                     /gene="Cib4"
                     /gene_synonym="1700041E20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            507..595
                     /gene="Cib4"
                     /gene_synonym="1700041E20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            596..780
                     /gene="Cib4"
                     /gene_synonym="1700041E20Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      760..765
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cib4"
                     /gene_synonym="1700041E20Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      780
                     /gene="Cib4"
                     /gene_synonym="1700041E20Rik"
                     /note="major polyA site"
ORIGIN      
        1 agtactacac cagctgctga gcccttgggg cagaagttct actgctggca ggaggaggct
       61 ggtttagcat ggggcagtgt ttaaggtacc agatgcagtg ggaggacctg gaagagtacc
      121 aggctctgac cttcctgaca agaaatgaga ttctgtgcat ccacgacacc ttcctgaagc
      181 tctgtccctc gggcaagcac tataaggagg ccacactgac catggaccag gtcagctccc
      241 ttcctgctct gagggtcaac cctttcagag accgcatctg cagggtattc tcccacgaca
      301 acgtgttctc ctttgaagac gtgctgggca tggcatctgt attcagtgag caggcctgcc
      361 ccagcctgaa gattgagtat gcctttcgta tctatgattt taacgagaat ggtttcattg
      421 atgaggagga cctcgaggag attgtgctaa gactactgaa aagtgacgac gcgtctgagg
      481 acctgctgat ggacgtcatg caccatgtcc tgagtgagtc agatctggac aatgacagta
      541 tgctttcctt ctccgagttc gaacacgcca tggccaaatc tccagatttc atgaactctt
      601 ttcggattca cttctggggc tgctgatgtg gaggtcatcg gctggttcgg cagcttcaat
      661 gaagactact ggacaccccc tgcatccagg cactgtagaa tctgatttga attatgactc
      721 agctctgtcc atccttcacc tctagagtac tgtttgctaa gtaaatatgt gtttccccca
//
