LOCUS       NM_206534                707 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus churchill domain containing 1 (Churc1), transcript
            variant 1, mRNA.
ACCESSION   NM_206534 XM_126982 XM_898874 XM_915823 XM_923946 XM_989203
            XM_989232
VERSION     NM_206534.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 707)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   4  (bases 1 to 707)
  AUTHORS   Sheng,G., dos Reis,M. and Stern,C.D.
  TITLE     Churchill, a zinc finger transcriptional activator, regulates the
            transition between gastrulation and neurulation
  JOURNAL   Cell 115 (5), 603-613 (2003)
   PUBMED   14651851
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC132331.3 and BC076499.1.
            
            On Mar 28, 2018 this sequence version replaced NM_206534.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC076499.1, BU841914.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               AC132331.3         99790-99890         c
            102-237             AC132331.3         92035-92170         c
            238-308             AC132331.3         89764-89834         c
            309-675             AC132331.3         82249-82615         c
            676-707             BC076499.1         641-672
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 33.73 cM"
     gene            1..707
                     /gene="Churc1"
                     /gene_synonym="1700030P15Rik; chch; My015"
                     /note="churchill domain containing 1"
                     /db_xref="GeneID:211151"
                     /db_xref="MGI:MGI:1923684"
     exon            1..101
                     /gene="Churc1"
                     /gene_synonym="1700030P15Rik; chch; My015"
                     /inference="alignment:Splign:2.1.0"
     CDS             63..401
                     /gene="Churc1"
                     /gene_synonym="1700030P15Rik; chch; My015"
                     /codon_start=1
                     /product="protein Churchill"
                     /protein_id="NP_996257.1"
                     /db_xref="CCDS:CCDS36478.1"
                     /db_xref="GeneID:211151"
                     /db_xref="MGI:MGI:1923684"
                     /translation="MCGDCVEKEYPNRGTTCLENGSFLLNFAGCAVCSKRDFMLITNR
                     SLKEEDGEEIVTYDHLCKNCHHVVARHEYTFSIMDEFQEYTMLCLLCGKAEDTISILP
                     DDPRQMTLLF"
     exon            102..237
                     /gene="Churc1"
                     /gene_synonym="1700030P15Rik; chch; My015"
                     /inference="alignment:Splign:2.1.0"
     exon            238..308
                     /gene="Churc1"
                     /gene_synonym="1700030P15Rik; chch; My015"
                     /inference="alignment:Splign:2.1.0"
     exon            309..676
                     /gene="Churc1"
                     /gene_synonym="1700030P15Rik; chch; My015"
                     /inference="alignment:Splign:2.1.0"
     regulatory      625..630
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Churc1"
                     /gene_synonym="1700030P15Rik; chch; My015"
                     /note="hexamer: AATAAA"
     regulatory      669..674
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Churc1"
                     /gene_synonym="1700030P15Rik; chch; My015"
                     /note="hexamer: AATGAA"
     polyA_site      671
                     /gene="Churc1"
                     /gene_synonym="1700030P15Rik; chch; My015"
     polyA_site      676
                     /gene="Churc1"
                     /gene_synonym="1700030P15Rik; chch; My015"
                     /note="major polyA site"
ORIGIN      
        1 aactctcgcg aggtttcgcc ttccgggtgt cgctggggtc gttctccgaa aactgcgtga
       61 cgatgtgtgg ggactgtgtg gagaaggagt accccaatcg gggcaccacc tgtctggaga
      121 atggatcgtt cttactgaac ttcgcaggct gcgcagtgtg cagtaagcgg gactttatgc
      181 tgatcacaaa cagatccctg aaagaggaag atggagaaga aatagttacc tatgaccatc
      241 tgtgtaagaa ctgtcatcat gtagtagcca gacacgagta tacattcagc atcatggatg
      301 aatttcagga atataccatg ctgtgtctgt tgtgtggcaa agctgaagat actatcagta
      361 ttctccctga tgacccccgg cagatgactc tgctgttcta agcctcccat ggttctcttg
      421 taactgtgtt ggcttgcttt aaaatagagc aagcctaggg ctggtgagat ggctcagtgg
      481 gtaagagcac ccgactgctc ttccgaaggt ccaaagttca aatcccagca accacatggt
      541 ggctcacaac catctgtaac aagatctgac tccctcttct ggagtgtctg aagacagcta
      601 cagtgtactt acatataata aataaataaa tctttaaaaa aaatagcaag cctaatggtt
      661 tgtttagtaa tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
