LOCUS       NM_145412               2931 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus CTF8, chromosome transmission fidelity factor 8
            (Chtf8), transcript variant 1, mRNA.
ACCESSION   NM_145412
VERSION     NM_145412.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2931)
  AUTHORS   Church,D.M., Goodstadt,L., Hillier,L.W., Zody,M.C., Goldstein,S.,
            She,X., Bult,C.J., Agarwala,R., Cherry,J.L., DiCuccio,M.,
            Hlavina,W., Kapustin,Y., Meric,P., Maglott,D., Birtle,Z.,
            Marques,A.C., Graves,T., Zhou,S., Teague,B., Potamousis,K.,
            Churas,C., Place,M., Herschleb,J., Runnheim,R., Forrest,D.,
            Amos-Landgraf,J., Schwartz,D.C., Cheng,Z., Lindblad-Toh,K.,
            Eichler,E.E. and Ponting,C.P.
  CONSRTM   Mouse Genome Sequencing Consortium
  TITLE     Lineage-specific biology revealed by a finished genome assembly of
            the mouse
  JOURNAL   PLoS Biol 7 (5), e1000112 (2009)
   PUBMED   19468303
REFERENCE   2  (bases 1 to 2931)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   3  (bases 1 to 2931)
  AUTHORS   Lopez-Fernandez,L.A. and del Mazo,J.
  TITLE     Characterization of genes expressed early in mouse spermatogenesis,
            isolated from a subtractive cDNA library
  JOURNAL   Mamm Genome 7 (9), 698-700 (1996)
   PUBMED   8703127
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC123864.4.
            
            On Feb 5, 2019 this sequence version replaced NM_145412.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10662773.31735.1,
                                           SRR7974084.19945.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849385, SAMN00849389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-93                AC123864.4         115086-115178
            94-149              AC123864.4         121323-121378
            150-267             AC123864.4         121642-121759
            268-2931            AC123864.4         122153-124816
FEATURES             Location/Qualifiers
     source          1..2931
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 53.3 cM"
     gene            1..2931
                     /gene="Chtf8"
                     /gene_synonym="5830457O10Rik; Ctf8; Derpc"
                     /note="CTF8, chromosome transmission fidelity factor 8"
                     /db_xref="GeneID:214987"
                     /db_xref="MGI:MGI:2443370"
     exon            1..93
                     /gene="Chtf8"
                     /gene_synonym="5830457O10Rik; Ctf8; Derpc"
                     /inference="alignment:Splign:2.1.0"
     exon            94..149
                     /gene="Chtf8"
                     /gene_synonym="5830457O10Rik; Ctf8; Derpc"
                     /inference="alignment:Splign:2.1.0"
     CDS             127..492
                     /gene="Chtf8"
                     /gene_synonym="5830457O10Rik; Ctf8; Derpc"
                     /note="protein DERPC; chromosome transmission fidelity
                     factor 8; CTF8, chromosome transmission fidelity factor 8
                     homolog"
                     /codon_start=1
                     /product="chromosome transmission fidelity protein 8
                     homolog"
                     /protein_id="NP_663387.3"
                     /db_xref="CCDS:CCDS57643.1"
                     /db_xref="GeneID:214987"
                     /db_xref="MGI:MGI:2443370"
                     /translation="MVQIVISSTGAEGLAEWVLMELQGEIEARYSTGLAGNLLGDLHY
                     TTEGIPVLIVGHHILYGKTIHLEKPFAVLVKHTPGKQDCDEPGRGTGTQYLVTALIKN
                     KILFKTRPKPIITNVPKKV"
     exon            150..267
                     /gene="Chtf8"
                     /gene_synonym="5830457O10Rik; Ctf8; Derpc"
                     /inference="alignment:Splign:2.1.0"
     exon            268..2931
                     /gene="Chtf8"
                     /gene_synonym="5830457O10Rik; Ctf8; Derpc"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2883..2888
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Chtf8"
                     /gene_synonym="5830457O10Rik; Ctf8; Derpc"
                     /note="hexamer: AATAAA"
     polyA_site      2901
                     /gene="Chtf8"
                     /gene_synonym="5830457O10Rik; Ctf8; Derpc"
                     /note="major polyA site"
ORIGIN      
        1 gcaggcaatg ctcgcggcgg cggcgacggc ggcgggaggt tcggttgtcg cccgttggcc
       61 gcgcggcgcc gcgctcggcg gccgccattg cagtttttca gttgcatttt taaagaagga
      121 aggctcatgg tgcaaattgt tatttccagt acgggggctg aaggcctggc agaatgggtg
      181 ctgatggagc tacaggggga gatcgaggct cgctacagca ccggattagc tggaaacctc
      241 ctgggagacc tacattacac cactgaggga atccctgtgc tgatcgtggg ccatcatatc
      301 ctgtatggga aaaccatcca cctggagaaa ccttttgcag tccttgtcaa acacactcct
      361 gggaagcagg actgtgatga gcccggtcga gggactggca cccagtactt ggtgacagca
      421 ctcatcaaaa acaagatcct tttcaaaact cgccccaagc ctattatcac caacgtcccc
      481 aagaaagtat gaaagaaccc cggattttcc ctagagagcg accaactcct tggactcgtg
      541 ctccattgcc acctcgagga cggctggacg gagggcctgt tatgaacgca ggccacccaa
      601 tgggtgtgaa ctcagatcct ttccttatgg cagcaggttc tcttggtgga aacctggctc
      661 catttccaag gaatgcagct ccttttcaga atccatcagg ctctttggcg tcaaacccag
      721 cacactttgc tgctggtgct cgcgacccag gcatgacttc tttcccaaga gggatgaatc
      781 ccactggcac aggtgcagtt tccttcccaa ggccaggagg cctgttggga ccaggaccag
      841 gaccaggttt aaaccctaga acaggggctc ttccaggccc agggcctatg tctaacccca
      901 gattaggagg gcttcctgga cctggtccta tggccaaccc aagggcaggc ggacttctgg
      961 gagcaagtcc tgaccctaga agtggtggcc ccatggtccc tggatgtgga cccaacatga
     1021 gggcaggtgt tttgtcctct gggactggtc ctcccaatcc taggccagtt ggcctgggtc
     1081 ctggaccaag tccaaatctg agatcaagct ttttaggtac aaacccggcc cctaggtcgg
     1141 gtatgtttcc aggcccaggc ctgggtccca acccacgagc atgtggctta ggaccaggtc
     1201 ttgggcccaa cccaagagct ggtggcctag gcccaggccc aaatctggac aacagagcag
     1261 gtggcctctt aggtacagga tctggtctta acttaagaat ggctggacct caaggcttag
     1321 atcttgcccc catcctgagg gcagcaggtc ttttagggac aaattcagtt tctttttccc
     1381 aggcttctgg aaacatgggc acaaacccgc ccaccatgac aagagtacct ggccccatag
     1441 gtccaaacac aggtcctagc tctcgaggac ttggccttcc agggccaaat ccctctccca
     1501 tgtcaagggc tcctggcccc atgggtccta attcagctca tttctcaaga ccaggtggcc
     1561 ccatgggggt aaatgctgga gtctttccaa gggggacagg atcaggagga ctgaacccaa
     1621 atgccttctc tcagtcttct ggcacattgg cctcaaatcc aggcaccttt cagaggtctg
     1681 ctggcctcca gggctcaaat caagcagttt tcccaagagc ctctgggcca ctaggcccca
     1741 acccagctaa ctttccaagg gccactggcc tgcagggtcc aagtccagct gccttcccaa
     1801 ggtctgctgg tccattaggc ccaggtcaag ttgctttccc caggtcagct gcggggcacc
     1861 tgggctcttc tccagcaggc cctgtgggta tcaacccagc tccttttgca agaccaacgg
     1921 ggaccctggg ccttaaccca gcttcctttc caaggatgaa tggccctgta ggtaagactt
     1981 tggtcccatt tcctagggta ggcagcctcc ctggctcaaa tccagctgct ttccccaggc
     2041 cagggggtcc aatggctgca atgtacccaa atggaatgtt acccccttaa ataccatttt
     2101 tcttccaggg ccacttttgt tatttaagca ctgtggttct gagctggggc tgtctcttag
     2161 ataaaagagt agatatggaa gtacagtctg aagaacatag ctggggctcg agttcaaatg
     2221 aaccttcttt ttcctctgct tttttcttga ctaaaggcaa aatgttattt gtgagccatg
     2281 gactatggca gatggggtga tcctggcctc aaggaaaagg ctctctggcc ttccggaagc
     2341 ctctgtgctt ttgtcccaca gctttctgcc ccttgtttct tactagttcc ttgaactgtt
     2401 ctcgtggact tttcctcagg gatacattgg cctgcaggtc ctagttcccc actcaccgct
     2461 ggagaattgg ctcgcttgct gtctagtgac gctgcattgg tgagcgggcc atgcttcggt
     2521 aactctgacc cggctccctg gacctagtca tgttctactg ccagaccttt ccctgggggc
     2581 ttgaacacag aatgggaggt ggacacccac gccacagacc caccacattt ctgcttgact
     2641 gggcctgcgg ctcctttctt ctgggactta gaggtggaca gatttaagct tcctccgatc
     2701 agccagctcc ctcctcactg gtcctcccaa tcaaagaacc tcaaaactta aactgcgatg
     2761 gatgggaagt gggggggctg gggggggggt ggagggatga aagggaaatc actgtgctgt
     2821 gttcagcttg atgtgaagga tggttggttt tcctccattg tatcttttct tactgtttct
     2881 ttaataaatg ggtgagaggg ctgctgctgt cgctccattt tgttctgttt a
//
