LOCUS       NM_199055               1879 bp    mRNA    linear   ROD 09-FEB-2024
DEFINITION  Mus musculus carbohydrate sulfotransferase 9 (Chst9), transcript
            variant 1, mRNA.
ACCESSION   NM_199055 XM_128967
VERSION     NM_199055.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1879)
  AUTHORS   Okuda,T., Sawada,T., Nakano,H., Matsubara,K., Matsuda,Y., Fukuta,M.
            and Habuchi,O.
  TITLE     Mouse N-acetylgalactosamine 4-sulfotransferases-1 and -2. Molecular
            cloning, expression, chromosomal mapping and detection of their
            activity with GalNAcbeta1-4GlcNAcbeta1-octyl
  JOURNAL   J Biochem 134 (1), 111-120 (2003)
   PUBMED   12944377
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC102416.5, AC157900.3 and AC102397.7.
            
            On Jul 20, 2018 this sequence version replaced NM_199055.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR11927938.2315206.1,
                                           ERR2680377.434216.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN00849385,
                                           SAMN01164131 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-178               AC102416.5         124470-124647       c
            179-395             AC157900.3         26171-26387
            396-434             AC157900.3         130575-130613
            435-472             AC102397.7         80176-80213
            473-1879            AC102397.7         122176-123582
FEATURES             Location/Qualifiers
     source          1..1879
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 8.85 cM"
     gene            1..1879
                     /gene="Chst9"
                     /gene_synonym="5430438D01Rik; galNAc-4-ST2; GalNAc4ST-2"
                     /note="carbohydrate sulfotransferase 9"
                     /db_xref="GeneID:71367"
                     /db_xref="MGI:MGI:1918617"
     exon            1..178
                     /gene="Chst9"
                     /gene_synonym="5430438D01Rik; galNAc-4-ST2; GalNAc4ST-2"
                     /inference="alignment:Splign:2.1.0"
     exon            179..395
                     /gene="Chst9"
                     /gene_synonym="5430438D01Rik; galNAc-4-ST2; GalNAc4ST-2"
                     /inference="alignment:Splign:2.1.0"
     CDS             296..1537
                     /gene="Chst9"
                     /gene_synonym="5430438D01Rik; galNAc-4-ST2; GalNAc4ST-2"
                     /note="isoform 1 is encoded by transcript variant 1;
                     galNAc-4-O-sulfotransferase 2;
                     N-acetylgalactosamine-4-O-sulfotransferase 2; carbohydrate
                     (N-acetylgalactosamine 4-0) sulfotransferase 9"
                     /codon_start=1
                     /product="carbohydrate sulfotransferase 9 isoform 1"
                     /protein_id="NP_951010.1"
                     /db_xref="CCDS:CCDS29074.1"
                     /db_xref="GeneID:71367"
                     /db_xref="MGI:MGI:1918617"
                     /translation="MKAKQVFFSVLLFGTAGLLLFMYLQAWIEEHHTGKIEKKRDQKG
                     VSVTTGKIQKQITNQNSEVHMPEDLKKKGGDLLNLGSPTRVLRKISHSQRENGAYRST
                     EAHQGAKIEVFQKPIQMDWPLVTQPLNKSLVQGNKWKKADATQEKRRSFLHEFCKKYG
                     RVNDPKFNLFHIVSRIYVEDKHKILYCEVPKAGCSNWKRILMVLNGLASSAYNISHDT
                     VHYGKHLKTLDSFDLKGVHMRLNTYTKAVFVRDPMERLVSAFRDKFEHPNSYYHPVFG
                     KAIIKKYRPNASAEALNNGSGVKFKEFAYYLLDAHRPVGMDIHWERVSKLCYPCLINY
                     DFVGKFETLGEDANYFLQLIGAPKELTFPNFKDRHSSDERTNAHVVRQYLKDLSTAER
                     QLIYDFYHLDYLMFNYTTPHL"
     exon            396..434
                     /gene="Chst9"
                     /gene_synonym="5430438D01Rik; galNAc-4-ST2; GalNAc4ST-2"
                     /inference="alignment:Splign:2.1.0"
     exon            435..472
                     /gene="Chst9"
                     /gene_synonym="5430438D01Rik; galNAc-4-ST2; GalNAc4ST-2"
                     /inference="alignment:Splign:2.1.0"
     exon            473..1879
                     /gene="Chst9"
                     /gene_synonym="5430438D01Rik; galNAc-4-ST2; GalNAc4ST-2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccggctcagc ggtctgcggg acccgcgctg ccctgctccc atagtgctcc gttcccgcac
       61 cgagcggcca gtcgcgcgga ctcgttccgg agagtttgcc ctagagcgcg ggcaagtttc
      121 ttccccaacc cgctctgcta gagtggtacc tgcaacagct ccagggacgg atgccaaggt
      181 gactctgtgg aatgacctcc aagagattaa gaaaacatta aaactccatg gagaactaga
      241 gctttgcagt ctttggattc agacatgaag agagacacag tggtctgaag tggtcatgaa
      301 agccaaacaa gtcttctttt ctgtcctgct gtttgggaca gcagggcttc tgctcttcat
      361 gtacttgcaa gcatggattg aagaacatca tacagggaaa atagagaaga aaagagatca
      421 gaaaggagta tcggtgacta cgggaaaaat ccagaaacag atcacgaatc agaactctga
      481 ggttcacatg cctgaagatc tgaagaagaa agggggagat ctgctcaacc tagggagtcc
      541 aacaagggtt ttaaggaaga tcagccattc acaaagggag aacggagctt acagatcaac
      601 tgaagcacat caaggagcta aaattgaagt ttttcagaaa cccatccaga tggactggcc
      661 actggtcact cagcccttaa acaaaagttt ggtccaaggc aacaaatgga agaaagcaga
      721 tgcaacccaa gagaagcgtc ggtcattcct tcatgagttt tgcaagaaat atggtagagt
      781 aaatgatccc aagttcaacc tttttcatat agtatctagg atatatgtag aagacaaaca
      841 caaaatcctg tactgtgaag taccaaaagc tggctgctct aattggaaaa gaattctgat
      901 ggtcctaaat ggattggctt cctctgcata caatatctcc catgatactg tgcactatgg
      961 gaagcatctg aaaacactgg atagttttga cttaaaagga gtacacatgc gtttgaatac
     1021 atataccaaa gctgtgtttg ttagagatcc catggaaaga ttagtctccg catttaggga
     1081 taaatttgag catcccaata gttactacca tccggtgttt ggaaaggcaa ttatcaagaa
     1141 atatcgacca aatgcctctg cagaagcatt aaataatgga tctggagtca aattcaaaga
     1201 attcgcctac tatttgctgg atgctcaccg tccagtagga atggatattc actgggaaag
     1261 agtcagcaaa ctgtgttatc cgtgtttgat caactatgac tttgtaggga agtttgagac
     1321 cttaggagag gatgccaatt actttctaca gttgattggt gctccaaaag agttgacatt
     1381 tccaaacttt aaggataggc actcctctga tgaaagaacc aatgcccacg tggtaaggca
     1441 gtatttaaag gacctgagca cagccgaaag acagctcatc tatgacttct atcacttgga
     1501 ctatttgatg tttaattaca caactccaca tttgtaattt gcattcattt ttctaaagcc
     1561 ctacatagat ttaatgatga tggcctcaaa taagctactg taattgtcct acaattctct
     1621 gtatggagga aatttagcta agtgaagttg tcttgattga atgaagactt tttttttttt
     1681 aaccaaagag tatgacagca attggaacaa agttattgaa aaatcatctc aaggagacat
     1741 gtaaacaact tgatgtgctt ttaaatgttg gaaaagagct gttttggcat tgtagcttat
     1801 gctgtggaag caataaccta gccagatgtt acattaacca agaaagcctc ttgcatgtaa
     1861 aataaaaggt caaaatatt
//
