LOCUS       NM_027928               1651 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus carbohydrate sulfotransferase 13 (Chst13), mRNA.
ACCESSION   NM_027928 XM_978459 XM_994764
VERSION     NM_027928.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Schaberg E, Theocharidis U, May M, Lessmann K, Schroeder T and
            Faissner A.
  TITLE     Sulfation of Glycosaminoglycans Modulates the Cell Cycle of
            Embryonic Mouse Spinal Cord Neural Stem Cells
  JOURNAL   Front Cell Dev Biol 9, 643060 (2021)
   PUBMED   34169071
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1651)
  AUTHORS   Shalom-Barak T, Zhang X, Chu T, Timothy Schaiff W, Reddy JK, Xu J,
            Sadovsky Y and Barak Y.
  TITLE     Placental PPARgamma regulates spatiotemporally diverse genes and a
            unique metabolic network
  JOURNAL   Dev Biol 372 (1), 143-155 (2012)
   PUBMED   22967998
REFERENCE   3  (bases 1 to 1651)
  AUTHORS   Akita K, von Holst A, Furukawa Y, Mikami T, Sugahara K and Faissner
            A.
  TITLE     Expression of multiple chondroitin/dermatan sulfotransferases in
            the neurogenic regions of the embryonic and adult central nervous
            system implies that complex chondroitin sulfates have a role in
            neural stem cell maintenance
  JOURNAL   Stem Cells 26 (3), 798-809 (2008)
   PUBMED   18079434
REFERENCE   4  (bases 1 to 1651)
  AUTHORS   van der Zwaag B, Burbach JP, Scharfe C, Oefner PJ, Brunner HG,
            Padberg GW and van Bokhoven H.
  TITLE     Identifying new candidate genes for hereditary facial paresis on
            chromosome 3q21-q22 by RNA in situ hybridization in mouse
  JOURNAL   Genomics 86 (1), 55-67 (2005)
   PUBMED   15953540
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122521.4.
            
            On or before Jul 26, 2009 this sequence version replaced
            XM_994764.1, XM_978459.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB587401.1, ERR2680379.154223.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-111               AC122521.4         107079-107189       c
            112-194             AC122521.4         100263-100345       c
            195-1651            AC122521.4         90355-91811         c
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 40.13 cM"
     gene            1..1651
                     /gene="Chst13"
                     /gene_synonym="1110067M19Rik; C4ST-3"
                     /note="carbohydrate sulfotransferase 13"
                     /db_xref="GeneID:71797"
                     /db_xref="MGI:MGI:1919047"
     exon            1..111
                     /gene="Chst13"
                     /gene_synonym="1110067M19Rik; C4ST-3"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..1034
                     /gene="Chst13"
                     /gene_synonym="1110067M19Rik; C4ST-3"
                     /EC_number="2.8.2.5"
                     /note="carbohydrate (chondroitin 4) sulfotransferase 13"
                     /codon_start=1
                     /product="carbohydrate sulfotransferase 13 precursor"
                     /protein_id="NP_082204.1"
                     /db_xref="CCDS:CCDS51847.1"
                     /db_xref="GeneID:71797"
                     /db_xref="MGI:MGI:1919047"
                     /translation="MGRRSCCRRPLPVVASLGAALLLLCALRPAFENKALGSSWFGGV
                     RKSPLQLLRDLDQGPRSAMAEVHQQRRELLRRACSRHTRRQRLLQPEDLRHVLVDDAH
                     RLLYCYVPKVACTNWKRVMLALRGRGDPSAIPAHEAHAPGLLPSLADFAPAEVNWRLR
                     DYLTFLFVREPFERLASAYRNKLARPHSAAFQRRYGTRIVRRLRPHAQPDALARGHDV
                     RFAEFLAYLLDPRTRRHEPFNEHWERAHALCHPCLVRYDVVGKFETIADDAAFVLDLV
                     GEPGLRFPAPPLRPEKDLTREQARRLFQDISPFYQRRLFNLYKMDFLLFNYSAPSYLR
                     LQ"
     exon            112..194
                     /gene="Chst13"
                     /gene_synonym="1110067M19Rik; C4ST-3"
                     /inference="alignment:Splign:2.1.0"
     exon            195..1651
                     /gene="Chst13"
                     /gene_synonym="1110067M19Rik; C4ST-3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgccacgcg tgccaggcac agcatgggaa gacgctcctg ttgcaggcgg cccttgccgg
       61 tggtggcaag tctgggtgct gcactcctgc tcctgtgcgc cctgcgtccc gcatttgaaa
      121 ataaagctct gggctccagc tggttcggtg gagtgaggaa gagtccccta cagctgttgc
      181 gtgacctgga ccagggtcca cgctccgcga tggccgaggt gcaccagcag cggcgtgagc
      241 tgctgcgccg ggcctgcagc cgccacacgc gacgccaacg cctgctgcag ccggaggacc
      301 tgcgtcacgt gctggtggac gacgcgcacc ggctgctgta ctgctacgtg cctaaggtgg
      361 cctgcaccaa ctggaagcgt gtgatgctgg cgttgcgcgg ccgtggggat ccaagcgcaa
      421 tccctgcgca cgaggcgcat gcgcctggcc tgctgccctc gctggccgac tttgcgccgg
      481 ctgaggtcaa ctggcggctg cgcgactacc tgacctttct cttcgtgcgg gagcccttcg
      541 agcgcctggc gtcagcctac cgcaacaagc tggcgcggcc acacagcgcg gccttccagc
      601 ggcgctatgg cacacgcatc gtgcgtcgcc tacgaccaca cgcgcagccc gatgcgctgg
      661 cccgcggcca cgacgtgcgc ttcgccgagt tcctggccta cctgctcgac ccgcgcacgc
      721 gccgtcatga gcccttcaac gaacactggg agcgcgcaca cgcgctgtgc catccgtgcc
      781 tagtgcgcta tgatgtagtg ggcaagtttg agacgatagc agatgatgct gccttcgtgc
      841 tggacctggt gggtgagcct gggctacgtt tccctgctcc accgctgagg ccagagaagg
      901 accttacgcg tgagcaggcc cggcgccttt tccaggacat cagccccttc taccagcgtc
      961 gcctctttaa cctctataag atggactttc tgctcttcaa ttactctgcc ccttcctacc
     1021 tgcgactgca ataagggtgt tgggtgcaat agagccagtg gctgctgtga ccaggaggcc
     1081 accaggaggt ctggaacgaa cctggttgtg tggattggag accttatcca gtgggcctga
     1141 ccaagagtct ggccactggt cacactcatt ccgactgggt agggtacagg ttgctttagg
     1201 tgaccataac cttgtcaggc cgtttctgct gttagtttga tgtgtgtctc ttcctcccac
     1261 tctgcagatg tcaggcttct tcctaggact ccaggtttgt agttctttgg tttggtttga
     1321 gaggccattt ctcagtcttg tctgtgtaga acctgtccgt ggcatggtgc tacaagacag
     1381 aatgtcatgg cttggttcag tgtggcctaa ggtcttgtca gcatttactg cttaggagtt
     1441 aacatgagct gcctgccacc ccagcagtca caggatggtg agcactacca ctccacatct
     1501 acctggctga tctacctttg atctcagcct tgcaagaggc tggatcttcc cctgtgtcag
     1561 caaaggccaa gatgcaatac tgtggcagct tttccagctc acttttattt tttttgttgt
     1621 ttttttaaat aaatatgttt tgttacattt t
//
