LOCUS       XM_011245817            3682 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus chordin (Chrd), transcript variant X6,
            mRNA.
ACCESSION   XM_011245817
VERSION     XM_011245817.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000082.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011245817.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3682
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="16"
     gene            1..3682
                     /gene="Chrd"
                     /gene_synonym="Chd"
                     /note="chordin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 19 ESTs, 53 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 16 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:12667"
                     /db_xref="MGI:MGI:1313268"
     CDS             371..3277
                     /gene="Chrd"
                     /gene_synonym="Chd"
                     /codon_start=1
                     /product="chordin isoform X6"
                     /protein_id="XP_011244119.1"
                     /db_xref="GeneID:12667"
                     /db_xref="MGI:MGI:1313268"
                     /translation="MPSLPAPPAPRLLLGLLLLGSRPASGTGPEPPALPIRSEKEPLP
                     VRGAAGCSFGGKVYALDETWHPDLGEPFGVMRCVLCACEAPQWARRGRGPGRVSCKNI
                     KPQCPTLACRQPRQLPGHCCQTCPQERSNLDPQPAGLVFEYPRDPEHRSYSDRGEPGV
                     GERTRADGHTDFVALLTGPRSQAVARARVSLLRSSLRFSVSYQRLDRPSRVRFTDPTG
                     NILFEHPATPTQDGLRRELRLRIAECDLFKVIWLVCGVWRAVPRLSVRLLRAEQLRVA
                     LVTSTHPSGEVWGPLIWQGALAAETFSAILTLEDPLQRGVGGIALLTLSDTEDSLHFL
                     LLFRGLLGGLAQAPLKLQILHQGQLLRELQANTSAQEPGFAEVLPSLTDQEMDWLELG
                     ELQMVLEKAGGPELRISGYITTRQSCDVLQSVLCGADALIPVQTGAAGSASFILLGNG
                     SLIYQVQVVGTGSEVVAMTLETKPQRKNQRTVLCHMAGLQPGGHMAVGMCSGLGARGA
                     HMLLQNELFLNVGTKDFPDGELRGHVTALCYSGHSARYDRLPVPLAGALVLPPVRSQA
                     AGHAWLSLDTHCHLHYEVLLAGLGGSEQGTVTAHLLGPPGMPGPQRLLKGFYGSEAQG
                     VVKDLEPVLLRHLAQGTASLLITTKSSPRGELRGQVHIASQCEAGGLRLASEGVQMPL
                     APNGEAATSPMLPAGPGPEAPVPAKHGSPGRPRDPNTCFFEGQQRPHGARWAPNYDPL
                     CSLCICQRRTVICDPVVCPPPSCPHPVQALDQCCPVCPEKQRSRDLPSLPNLEPGEGC
                     YFDGDRSWRAAGTRWHPVVPPFGLIKCAVCTCKGATGEVHCEKVQCPRLACAQPVRAN
                     PTDCCKQCPVGSGTNAKLGDPMQADGPRGCRFAGQWFPENQSWHPSVPPFGEMSCITC
                     RCGAGVPHCERDDCSPPLSCGSGKESRCCSHCTAQRSASETRTLPELEKEAEHS"
ORIGIN      
        1 tcccccactc gcgatccggc cgctgctgct gggccggacc ccccgggctc agccgggctc
       61 cttgtggagc cgccgccgcg ccccgtttgc tgaagaggag gccccgggcc cggacgcctg
      121 gcgcgggcat aaaacgggcc agagccggcg cctagggcac taaagtggag tacggcccgg
      181 gtcagcgccc ctccgcccgc tctctcccgc cccgcccggc cgggagccga ccaggcgact
      241 gtgagacgag cccctcgcca ctgcccccct cctggccccg gccccctcct gccggcccgc
      301 ctccggtccg gccctactcc ctctcctgct ccctcctccc gcccgcctcc ccagctgtct
      361 gctccgcgtc atgccgagcc tcccggcccc gccggccccg cggctgctcc tcgggctgct
      421 gctgctcggc tcgcggccgg ccagtggcac tggccctgag cccccagcac tgcccatccg
      481 ttccgagaag gagccgctgc ctgtccgggg agcggcaggc tgctccttcg gcgggaaggt
      541 ctatgccttg gacgagacgt ggcacccgga cctgggggag ccttttgggg tgatgcgctg
      601 cgtgctgtgc gcctgtgaag cgcctcagtg ggctcgccgt gggaggggtc ctggcagggt
      661 cagctgcaag aacatcaaac ctcagtgccc caccctggcc tgcaggcagc cgcgccagct
      721 gccaggacac tgctgccaga cctgcccgca ggagcgcagc aatctagatc cacagcccgc
      781 tggcctggtc ttcgagtatc caagggatcc agagcatcgc agttacagtg atcgagggga
      841 acccggcgtt ggggagcgga cccgtgctga tggccacaca gactttgtgg cgctgctgac
      901 aggaccgagg tcgcaggcgg tagctcgtgc tcgagtctct ttgctgcgct caagtttacg
      961 cttctctgtc tcctaccagc ggctggaccg tcccagcagg gttcgtttca cagatcccac
     1021 aggcaacatc ctgtttgaac accctgcaac ccccacccag gatggcctga ggagggaact
     1081 gaggctcaga atagcagaat gtgatttgtt caaggtcatt tggctagtct gtggggtgtg
     1141 gcgggcagtg cctcggctgt ctgtgaggct cctgagggca gagcagcttc gggtagccct
     1201 tgtgacatcc actcaccctt caggagaagt ctgggggcct ctcatttggc agggtgctct
     1261 cgctgcagag accttcagtg ccatcctgac cctggaagac ccactgcagc ggggtgtggg
     1321 gggcatagcc ctgctcaccc tcagtgacac agaagattcc ttgcattttt tgctgctctt
     1381 ccggggtctg ctgggaggac tagctcaggc tcccttgaag cttcagattc tccaccaggg
     1441 acagctactt cgggagctcc aggccaacac ctccgctcag gagccaggtt ttgctgaggt
     1501 gctgcccagc cttacagacc aagagatgga ctggttggag ctgggggagc tgcagatggt
     1561 cctagagaag gcgggtgggc cagagctacg catcagtgga tacatcacca ccaggcagag
     1621 ctgtgatgtc cttcaaagtg tcctttgtgg ggctgatgcc ctgatcccag tccagacggg
     1681 tgctgctggg tcagccagct tcatattgct aggaaatggc tcccttatct atcaggtgca
     1741 agtggtaggt acaggtagcg aggtggtggc catgacactg gagaccaagc ctcagcggaa
     1801 gaaccagcgc actgtcctgt gccacatggc tggactccag ccgggaggac acatggctgt
     1861 gggtatgtgc tctgggctgg gtgcccgagg ggctcatatg ctgctacaga acgagctgtt
     1921 cctgaatgtt ggtaccaagg acttcccaga tggagagctt cgggggcatg tgactgccct
     1981 atgctacagt gggcacagtg cccgctatga cagattgcct gtgcctctgg caggggcact
     2041 agtgctgccc cctgtgcgga gtcaggcagc agggcacgcc tggctctcct tggatacaca
     2101 ttgtcactta cactatgaag ttctattggc tgggcttggt ggctcagagc aaggaactgt
     2161 cactgcccac ctccttgggc ctcctgggat gccagggccc cagcggctgc tgaagggatt
     2221 ctatggctca gaggctcagg gcgtggtaaa agatctggag cctgtgctgc tgcggcacct
     2281 ggcacagggc actgcctccc tgctcatcac caccaagagt agccccagag gagaactacg
     2341 tgggcaggtg cacattgcca gtcagtgtga ggcgggaggc ctgcgtctgg cctcagaagg
     2401 agtgcagatg cccttggctc caaatggaga ggcggctacg tcacccatgc tgcctgctgg
     2461 ccctggccct gaagccccag taccagccaa acatggcagc cctgggagac cccgagatcc
     2521 taacacatgt ttcttcgagg ggcagcagcg gccccacggg gctcgctggg cacccaacta
     2581 tgacccactc tgctccctct gcatctgcca gagacgaaca gtgatctgtg accctgtagt
     2641 atgcccacca ccaagctgtc cccacccggt gcaggcactg gaccagtgct gtcccgtgtg
     2701 tccagagaaa caacgcagta gagacctccc cagcctacca aatctggagc caggagaggg
     2761 ctgctatttt gatggtgacc ggagctggag ggcagcgggt acccgatggc accctgttgt
     2821 gccccccttt ggcctaatta agtgtgctgt ctgcacctgc aagggggcca cgggagaggt
     2881 gcactgtgag aaggtgcagt gtcctcgcct ggcctgtgct cagcctgtcc gtgccaaccc
     2941 caccgactgc tgcaaacagt gtccagtagg gtcagggact aatgccaagc tgggagaccc
     3001 catgcaggct gatgggcctc gggggtgtcg ctttgctggg cagtggttcc cagagaatca
     3061 gagctggcac ccatcagtgc ccccctttgg ggagatgagc tgtattacct gcagatgtgg
     3121 ggcaggggta ccccactgtg agcgggacga ttgttcaccg ccgctatcct gtggctcagg
     3181 gaaggagagt cgatgctgtt cccactgcac agcccaaagg tcagcctctg agactagaac
     3241 ccttccagag ctggagaaag aagcggagca ctcctaggga gcatccagaa ggccatatga
     3301 ccaagaggat gggcctgagc tgggagaagg agtggtgctg aggaccccga ctctcctgtg
     3361 ggaacccagt gcctttcgtg cctctgctct gcttcttctc ctcccccact acctctggga
     3421 accacaagtc tacaagggga aagactgctg ggtcagacca aggccatatc catgcgaact
     3481 cctgccctgt tttcttttgg cctctgtccc acaagcttaa ctcttttctt ctgtacagaa
     3541 caccactggc ttattgggat tctttaattt atcctcactc agcaccaagg gttccctcac
     3601 accattcctg ctacccctga gctgagcaga gtcattatta gagatttttt tttgtattta
     3661 ttaaaacatc tttttttcag tc
//
