LOCUS       NM_053068                851 bp    mRNA    linear   ROD 03-SEP-2024
DEFINITION  Mus musculus chromatin accessibility complex 1 (Chrac1), mRNA.
ACCESSION   NM_053068 NM_020592
VERSION     NM_053068.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 851)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 851)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 851)
  AUTHORS   Liang,Z.S., Cimino,I., Yalcin,B., Raghupathy,N., Vancollie,V.E.,
            Ibarra-Soria,X., Firth,H.V., Rimmington,D., Farooqi,I.S.,
            Lelliott,C.J., Munger,S.C., O'Rahilly,S., Ferguson-Smith,A.C.,
            Coll,A.P. and Logan,D.W.
  TITLE     Trappc9 deficiency causes parent-of-origin dependent microcephaly
            and obesity
  JOURNAL   PLoS Genet 16 (9), e1008916 (2020)
   PUBMED   32877400
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 851)
  AUTHORS   Elsen,G.E., Bedogni,F., Hodge,R.D., Bammler,T.K., MacDonald,J.W.,
            Lindtner,S., Rubenstein,J.L.R. and Hevner,R.F.
  TITLE     The Epigenetic Factor Landscape of Developing Neocortex Is
            Regulated by Transcription Factors Pax6--> Tbr2--> Tbr1
  JOURNAL   Front Neurosci 12, 571 (2018)
   PUBMED   30186101
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 851)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   6  (bases 1 to 851)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   7  (bases 1 to 851)
  AUTHORS   Ballif,B.A., Villen,J., Beausoleil,S.A., Schwartz,D. and Gygi,S.P.
  TITLE     Phosphoproteomic analysis of the developing mouse brain
  JOURNAL   Mol Cell Proteomics 3 (11), 1093-1101 (2004)
   PUBMED   15345747
REFERENCE   8  (bases 1 to 851)
  AUTHORS   Collins,N., Poot,R.A., Kukimoto,I., Garcia-Jimenez,C., Dellaire,G.
            and Varga-Weisz,P.D.
  TITLE     An ACF1-ISWI chromatin-remodeling complex is required for DNA
            replication through heterochromatin
  JOURNAL   Nat Genet 32 (4), 627-632 (2002)
   PUBMED   12434153
REFERENCE   9  (bases 1 to 851)
  AUTHORS   Bolognese,F., Imbriano,C., Caretti,G. and Mantovani,R.
  TITLE     Cloning and characterization of the histone-fold proteins YBL1 and
            YCL1
  JOURNAL   Nucleic Acids Res 28 (19), 3830-3838 (2000)
   PUBMED   11000277
REFERENCE   10 (bases 1 to 851)
  AUTHORS   Poot,R.A., Dellaire,G., Hulsmann,B.B., Grimaldi,M.A., Corona,D.F.,
            Becker,P.B., Bickmore,W.A. and Varga-Weisz,P.D.
  TITLE     HuCHRAC, a human ISWI chromatin remodelling complex contains hACF1
            and two novel histone-fold proteins
  JOURNAL   EMBO J 19 (13), 3377-3387 (2000)
   PUBMED   10880450
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK010812.1.
            
            On Apr 6, 2007 this sequence version replaced NM_053068.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK010812.1, BC061043.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-851               AK010812.1         2-852
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 33.92 cM"
     gene            1..851
                     /gene="Chrac1"
                     /gene_synonym="2410152E03Rik; 2810406L04Rik; YCL1"
                     /note="chromatin accessibility complex 1"
                     /db_xref="GeneID:93696"
                     /db_xref="MGI:MGI:2135796"
     exon            1..172
                     /gene="Chrac1"
                     /gene_synonym="2410152E03Rik; 2810406L04Rik; YCL1"
                     /inference="alignment:Splign:2.1.0"
     CDS             26..415
                     /gene="Chrac1"
                     /gene_synonym="2410152E03Rik; 2810406L04Rik; YCL1"
                     /note="NF-YC-like protein; CHRAC-1; YC-like protein 1; DNA
                     polymerase epsilon subunit p15"
                     /codon_start=1
                     /product="chromatin accessibility complex protein 1"
                     /protein_id="NP_444298.1"
                     /db_xref="CCDS:CCDS27516.1"
                     /db_xref="GeneID:93696"
                     /db_xref="MGI:MGI:2135796"
                     /translation="MADAAVGKEKCGDQRLVSLPLSRIRVIMKSSPEVSSINQEALVL
                     TAKATELFVQYLATCSYRHGSGKAKKALTYSDLASTAEDSETLQFLADILPKKILASK
                     YLKMLKEKREEEEDNEDDGSDLGEALA"
     exon            173..299
                     /gene="Chrac1"
                     /gene_synonym="2410152E03Rik; 2810406L04Rik; YCL1"
                     /inference="alignment:Splign:2.1.0"
     exon            300..851
                     /gene="Chrac1"
                     /gene_synonym="2410152E03Rik; 2810406L04Rik; YCL1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggccgcccg ggacggacgc ggaagatggc ggacgcggcc gtggggaagg aaaagtgcgg
       61 ggaccagcgg ctcgtgtcat tgcccctgtc ccgcatccga gtcatcatga agagctctcc
      121 cgaggtgtcg agcatcaacc aggaggcgct ggtgctcacg gccaaggcca cggagctctt
      181 tgttcagtac ctagccacct gttcctacag acacggaagt ggcaaagcca agaaagcact
      241 gacgtacagc gacttagcca gcactgcaga ggactcggag acacttcagt ttctcgcaga
      301 tatattacca aagaagattt tagctagtaa gtacctgaaa atgctcaaag agaagaggga
      361 agaggaggag gacaatgagg acgatggaag cgaccttggt gaagccctgg cttaggccag
      421 caagaagagc tctcatcctg tcctgtgagc acatgcaagg acagactaac agctgcgaag
      481 tgaagggcac tgcaactttg tctcagactt gcaacttgtt gcattccctc ttgcagtgga
      541 aaggactgga cagcagcagc ctcctctaca ggcccttcag ccatctcctc tctcccactg
      601 ggagagtcct gggcagatgg cactgctctg gctttgggta cagtagcaca caccactgaa
      661 cctcacattg aacttgcagg gcagacctgg gaagctccct ggcagctgtg tagtcgcgtg
      721 gacacactgt tctcacagac tacatgcata ctgtgctacc tttgatgttc gctttctaaa
      781 aaaaggacta tgcagtttta ttgtacagga atttgctttc ctctttccat taaaggtctg
      841 tattgtacag t
//
