LOCUS       NM_001080816            1605 bp    mRNA    linear   ROD 04-OCT-2023
DEFINITION  Mus musculus chitinase-like 5 (Chil5), mRNA.
ACCESSION   NM_001080816 XM_011240357 XM_011251872 XM_983416
VERSION     NM_001080816.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Van Dyken SJ, Liang HE, Naikawadi RP, Woodruff PG, Wolters PJ, Erle
            DJ and Locksley RM.
  TITLE     Spontaneous Chitin Accumulation in Airways and Age-Related Fibrotic
            Lung Disease
  JOURNAL   Cell 169 (3), 497-509 (2017)
   PUBMED   28431248
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Hussain M and Wilson JB.
  TITLE     New paralogues and revised time line in the expansion of the
            vertebrate GH18 family
  JOURNAL   J Mol Evol 76 (4), 240-260 (2013)
   PUBMED   23558346
REFERENCE   3  (bases 1 to 1605)
  AUTHORS   Desai J, Shannon ME, Johnson MD, Ruff DW, Hughes LA, Kerley MK,
            Carpenter DA, Johnson DK, Rinchik EM and Culiat CT.
  TITLE     Nell1-deficient mice have reduced expression of extracellular
            matrix proteins causing cranial and vertebral defects
  JOURNAL   Hum Mol Genet 15 (8), 1329-1341 (2006)
   PUBMED   16537572
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC025786.16, AB081756.1, BC116403.1 and AI851591.1.
            
            On or before Jul 8, 2015 this sequence version replaced
            XM_011240357.1, XM_011251872.1, NM_001080816.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                AC025786.16        34081-34101
            22-136              AB081756.1         25-139
            137-338             AC025786.16        38057-38258
            339-561             AB081756.1         140-362
            562-686             AC025786.16        46963-47087
            687-1116            AB081756.1         363-792
            1117-1544           BC116403.1         620-1047
            1545-1585           AI851591.1         21-61               c
            1586-1586           AC025786.16        50053-50053
            1587-1605           AI851591.1         1-19                c
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 46.47 cM"
     gene            1..1605
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /note="chitinase-like 5"
                     /db_xref="GeneID:229687"
                     /db_xref="MGI:MGI:2676649"
     exon            1..106
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..1377
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /note="chitinase like protein 2; chitinase 3-like 7"
                     /codon_start=1
                     /product="chitinase like precursor"
                     /protein_id="NP_001074285.1"
                     /db_xref="CCDS:CCDS38584.1"
                     /db_xref="GeneID:229687"
                     /db_xref="MGI:MGI:2676649"
                     /translation="MTKLILVTGLALLLNPQLGSAYQLMCYYNNVAQNRPKLGSFNPA
                     DIDPCLCTHLIYAFAGMQNNKVTMRSMNDLTDYQALNTLKSRNVQLKTLLAIGGRDFG
                     PAPFSAMVSTPHNQQTFINSAIKFLRQYGFDGLNLDWQFPGSRGSPSRDKHLFTVLVQ
                     KIREAFELEAIENKSPRLMVTATVAGVISTIQSGYEIPQLSHFLDYIQVMTYNLHGSQ
                     DGYTGENSPLYKSLNDTGINTLLNVDYIMTYWNENGAAPEKLIVGFPAYGQTFTLSDP
                     SNNGISAPTASAGTLGPYTEESGTWAYYEICSFLNDGATEAWDSAQEVPYAYQGNKWV
                     GYDNVKSFRIKAEWLKQNNLGGAMLWTLDMDDFTGSFCNQGQFPLTSTLKNALLVYST
                     SCMASVSDLQQVNAPLYSGNRNWKRGSKAMDSVSPVPRE"
     exon            107..136
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /inference="alignment:Splign:2.1.0"
     exon            137..338
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /inference="alignment:Splign:2.1.0"
     exon            339..395
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /inference="alignment:Splign:2.1.0"
     exon            396..561
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /inference="alignment:Splign:2.1.0"
     exon            562..686
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /inference="alignment:Splign:2.1.0"
     exon            687..810
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /inference="alignment:Splign:2.1.0"
     exon            811..996
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /inference="alignment:Splign:2.1.0"
     exon            997..1116
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1258
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /inference="alignment:Splign:2.1.0"
     exon            1259..1590
                     /gene="Chil5"
                     /gene_synonym="Bclp; Bclp1; Bclp2; Chi3l7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctttccatc tgacaaacct tatagtctta aatgttttaa aaagccaact gagactcttc
       61 tgaagcagtc ctgaaaacat catgaccaag ctcattcttg tcacaggttt ggcacttctg
      121 ctgaatcctc agctgggctc tgcctaccag ctgatgtgct actataataa tgtagcccag
      181 aacagaccaa aattgggaag tttcaatcct gctgatattg acccctgcct gtgtactcac
      241 ctcatctatg cctttgctgg tatgcagaac aacaaggtta ccatgagaag catgaatgac
      301 ttgactgact accaagcctt aaatactcta aaaagcagaa acgtacagct gaaaaccctc
      361 ctggccattg gaggacggga ctttggacct gccccgttca gtgccatggt ctccactcca
      421 cacaaccaac agactttcat taactcagcc atcaaattcc tgcgccagta tgggtttgat
      481 ggactgaacc tggactggca gttccctggg tctcgtggaa gcccttctag ggacaaacat
      541 ctcttcactg tcctggtaca gaaaatacgt gaggcttttg aactggaagc cattgaaaac
      601 aagagcccta ggctgatggt cactgccaca gtagctggtg tcatctctac catccaatct
      661 ggctatgaga tccctcaatt atcacacttc ctagactaca tccaggtcat gacttacaat
      721 ctccatggct cccaagatgg ctatactggg gaaaacagcc cactctacaa atccctaaat
      781 gacactggca tcaacaccct cctcaatgtg gattacatca tgacctactg gaatgaaaat
      841 ggggcagcac ctgagaagct cattgttgga ttcccagcat atggacaaac cttcaccctg
      901 agtgacccct ccaacaatgg aataagtgct cctactgcta gtgctggtac actagggccc
      961 tacacagaag agtctggcac ctgggcctat tatgagattt gctccttcct gaatgatgga
     1021 gccactgaag cctgggattc tgcgcaggaa gtaccctatg cctatcaggg aaacaaatgg
     1081 gttggctatg ataatgtcaa gagttttcga atcaaggctg aatggcttaa acagaacaac
     1141 ctgggaggtg ccatgttatg gacccttgat atggatgact tcactggctc tttctgcaac
     1201 cagggccaat tccctctgac atctaccctg aagaatgccc tcttagtgta cagcacaagt
     1261 tgcatggcct ctgtttcaga tcttcagcaa gtaaatgctc ctctatacag tgggaatagg
     1321 aactggaaga gaggctctaa agcaatggat tctgtgtcac ctgtgccaag agaataatca
     1381 aaatgccttc tggcacagcc caaatggaat cttattccaa cacaacttcc aaatggatcc
     1441 tctcctcaaa ataatctggt atgaagaaac taggcatgaa cttgtcccta taagtttttc
     1501 cagggcccag aagagtctcc tttgctcctt gcgaagctcg tcttgaatta cctaaaatac
     1561 taaaaataaa atcaacagtc aaaacatgaa aaaaaaaaaa aaaaa
//
