LOCUS       NM_001142681            4194 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus chitinase domain containing 1 (Chid1), transcript
            variant 1, mRNA.
ACCESSION   NM_001142681
VERSION     NM_001142681.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4194)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY101128.1, BC006876.1, AK050655.1 and BE953974.1.
            
            On Apr 4, 2019 this sequence version replaced NM_001142681.1.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1). Variants 1, 4 and 5 encode the same isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK036717.1, SRR17253013.3641064.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-22                BY101128.1         31-52
            23-1367             BC006876.1         1-1345
            1368-4192           AK050655.1         1087-3911
            4193-4194           BE953974.1         17-18               c
FEATURES             Location/Qualifiers
     source          1..4194
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 86.86 cM"
     gene            1..4194
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /note="chitinase domain containing 1"
                     /db_xref="GeneID:68038"
                     /db_xref="MGI:MGI:1915288"
     exon            1..56
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            57..211
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            212..361
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            362..494
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            495..539
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            540..646
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            647..708
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            709..801
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            802..903
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            904..1059
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1060..1140
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1141..1183
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1184..4194
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1339..1344
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /note="hexamer: AATATA"
     polyA_site      1367
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /note="major polyA site"
     polyA_site      1996
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /note="major polyA site"
     regulatory      2125..2130
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /note="hexamer: CATAAA"
     polyA_site      2147
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /note="major polyA site"
     polyA_site      4194
                     /gene="Chid1"
                     /gene_synonym="3110023E09Rik"
                     /note="major polyA site"
ORIGIN      
        1 gattaaatcg tcttccggcc gtgcttgatg ggtctggccg gtctcctgac atgaagcccc
       61 cctaggccca gaggttggtt cctgctgtga catgcctgcc atgtggccac ttcttcatgt
      121 cctctggctt gctctggtct gtggctctgt tcacaccacc ctgtcaaagt cagatgccaa
      181 aaaagctgcc tcaaagatgc tgctggaaaa gactcagttt tcagataaac ctgtccaaga
      241 tcggggtctg gtggtgacgg acatcaaagc tgaggatgtg gttcttgaac atcgtagcta
      301 ctgctcatca agggctcggg agagaaactt tgctggagag gtcctaggct acgtcactcc
      361 atggaacagc catggctacg atgttgccaa ggtctttggg agcaagttca cacagatctc
      421 accagtctgg ttgcaactga agagacgtgg tcgtgagatg tttgaaatta caggcctcca
      481 tgatgtggac caagggtgga tgcgagctgt caagaagcat gccaaaggtg tgcgcatagt
      541 gcctcgactt ctgtttgaag actggactta tgatgatttc cgaaacgtct tagacagtga
      601 ggatgagata gaagagctca gcaagactgt ggcacaggtg gcaaagaacc agcattttga
      661 cggttttgtg gtggaggtct ggagccagtt gctgagccag aaacatgtag gcctcattca
      721 catgcttact cacttggctg aggcgctgca ccaggccagg ctgctggtca ttctggtcat
      781 cccacctgct gtcacgccgg ggactgacca gctgggcatg tttacacaca aggagtttga
      841 gcaactggcc cccatactag atggcttcag cctcatgaca tatgactatt ccacgtcaca
      901 acagcctggc cctaatgctc ccttgtcatg gattcgagcc tgtgtccagg tcctagaccc
      961 caagtcacag tggcgaagca agatcctcct gggcttgaac ttctatggca tggattatgc
     1021 agcctccaag gatgcccgtg agcctgtcat tggagccagg tacgtacaga cgctgaagga
     1081 ccacaggccc cgagtggtat gggacagcca ggctgcggag cacttctttg agtacaagaa
     1141 gaatcgcggc gggaggcatg ttgtcttcta cccaactctg aagtctctgc aggtgcggct
     1201 ggagctagcc agggagcttg gcgtcggggt ctccatctgg gagctgggcc aaggcctgga
     1261 ttacttctat gacctgctgt aggctggaaa gcaaccccca agtgactgga cttttctaag
     1321 ccatggagtg actggtgaaa tataggcctt ttctctgttt accatgagac agctgctatg
     1381 ggtccacacg catgggtgtc tcctagtcca ggatttgaat cggaatcctt tctactcact
     1441 actcactgct gcctgctgtg ggccaggtga aaacgcaacc cccatcccct aggacagcct
     1501 ggctctggac tcaggcctcg agtgcttttc aaggcctgtg tgggatgtgg gtttggaaga
     1561 tgtgaacaat cacagactct tctaaacagc ccttctcagc atcaccctta agcctgacag
     1621 gccctgcctt catactatga tcacctgcct accacaaaca cgggtatatt caaggtacct
     1681 gatacctgga gcaggttcta cacctacccc cactgggctt gatgtgacca ggttgtgcga
     1741 tcatgttgga aactggccca gagaagctgg acttacttct gtgaaacacc atgggccata
     1801 gccctgactg tccaccagat aacaggatag gatcagccca tggggcagca gaaggacctg
     1861 tgggctgagt gggacaggta tcatgagatc agaagggatc tgtctatctt agtaaacagc
     1921 aacaggctga tccagtgctg gggagatgtc caagacttct aaggcaccaa caggtgaaga
     1981 atggctgacc tacttatttc ttcactcctt cattccaagt gccctcatcc cctgctggat
     2041 atgatctcaa ggtagtgatc tctggtgctg cgggccattg ggtggagctt tctaatccac
     2101 tagccaagcc tgagccatag agatcataaa ccctaactag gcttttaccc tgtgagtttc
     2161 tgagatttgt ggctcaagat ccttagtgtt aggaacgggg aggatgctaa aacagcgggc
     2221 ctaggcctga ctcaaaaggc tgaacctctc ccactctgga gtgggtagtc ctacctacgt
     2281 cagttgaacc acctattgac cttaacctac tggaatagag gtatccctga acattcactg
     2341 agctcagtgt gaccaaggct gagaacctgg gatgctaggt caggggttcc tgagatggat
     2401 agactctgcc aactatctga tacctgtaaa ggccttgggg gctacactga ccccgctgac
     2461 tttgagaaga cacaactcta cagaccccag ttaaggatag tcaggacaag aaggccagtg
     2521 tgagggacag aggcatcttg acccccccat actataagaa gtggtcatca gtgcgctcat
     2581 gtgctatgtg tggtatgagg tagtagacgt tggaacactg gctggtacgg tggggccatg
     2641 agcctgctcc cacactggct gctcagccag agctgagtcc tagccttgag tccaagggtt
     2701 tagtggatgg gagtagtctc cgaatataag aagtgagtga catggagttc tcctagttgt
     2761 gggcagagca ctggtgaagc aggctgggga acagccttct gcaagcagat ggagtgatta
     2821 aggtggcatg ggggacaagc agaataggtc agagtgccac agtcaagggt cctgctggag
     2881 agtcaaatga tagaagtaga tgggaacttg gctgagttct ctggggccac agaaaagtga
     2941 gcagccagct cagcctcttg gctttctttc cctcattgat gctggagatt gaccccaagc
     3001 accatgcagg gacatccgca ctgagcagta accttcaggt tctgggtttg agtcagcaaa
     3061 gttgaggtat gcagagatgc tgtccaagag ctaacagact ggtagataga aattcagtca
     3121 gagagtggca aggtagtcag tggctatggt gagctggtga ccatgagcca tggatggcag
     3181 ctgcttagct tggggaggag aggggagaaa gggcatcctg ggacttgagg agggtcagca
     3241 ccccactgta ctttgagtac aacttctcag tttggccatc tgtaagtaac aggttttttt
     3301 gctaattagc agcctgcctg gagcagctga ctccacagtt aactcagggt cctatggctt
     3361 ctaactagaa agacgacagt gggccacaag gactcagccc agagccagag atatctgggt
     3421 cacactcagg tgtgtgagtc acaatgactc ctaatgagga ctgtgctcag agtaggctcc
     3481 tcacacagca gggtgtggag actgagagtc agatggctca cagctcctga gggtcctggg
     3541 agctcatctt agcctgaacc cccagagtac catccctata gtcaaaggcc ctcacctata
     3601 gctcttcttt atcccctagt taagaagaca ctgcctttga tgtcttgatg gtggcttgat
     3661 gttctatatg actctaactc tggccagtgg caaaggctct gtgtctccta gtgttgcaat
     3721 ttgcagtctc tccagactaa tccaggggca gaggtactag gacagagata caagagtaac
     3781 tgaggtagcc caggagaaac aggagagaac ggaggccacc ccttccccca actaagaggt
     3841 tagcagtgtt cccctgagct ccgagctctg ctgacccttg gaaaatgaaa gaacttcctc
     3901 agttgaaggc tgtacaacct ttgtgtgttg gcaagaccca cagtctgctc acacacttta
     3961 ttaagatgca tctggaacca cgacactgtc atggaatgtg gatcatggga cctggccctg
     4021 cctggagcac caagatcatc gtgggccttg agcagactgg gcctgccccc aacctagcaa
     4081 ccatgcaagg ctgggaaccc catcctgtgt gaacactgga aggtatatat ggatataaaa
     4141 agtgtcaaag ttccctgggc ccttagccct gggtgccatt tggcaccaac tcta
//
