LOCUS       NM_138585               3820 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus calcium homeostasis endoplasmic reticulum protein
            (Cherp), transcript variant 1, mRNA.
ACCESSION   NM_138585
VERSION     NM_138585.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3820)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3820)
  AUTHORS   Crisci,A., Raleff,F., Bagdiul,I., Raabe,M., Urlaub,H., Rain,J.C.
            and Kramer,A.
  TITLE     Mammalian splicing factor SF1 interacts with SURP domains of U2
            snRNP-associated proteins
  JOURNAL   Nucleic Acids Res 43 (21), 10456-10473 (2015)
   PUBMED   26420826
REFERENCE   3  (bases 1 to 3820)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3820)
  AUTHORS   Contos,J.J. and Chun,J.
  TITLE     Genomic characterization of the lysophosphatidic acid receptor
            gene, lp(A2)/Edg4, and identification of a frameshift mutation in a
            previously characterized cDNA
  JOURNAL   Genomics 64 (2), 155-169 (2000)
   PUBMED   10729222
REFERENCE   5  (bases 1 to 3820)
  AUTHORS   Ko,M.S., Threat,T.A., Wang,X., Horton,J.H., Cui,Y., Wang,X.,
            Pryor,E., Paris,J., Wells-Smith,J., Kitchen,J.R., Rowe,L.B.,
            Eppig,J., Satoh,T., Brant,L., Fujiwara,H., Yotsumoto,S. and
            Nakashima,H.
  TITLE     Genome-wide mapping of unselected transcripts from extraembryonic
            tissue of 7.5-day mouse embryos reveals enrichment in the t-complex
            and under-representation on the X chromosome
  JOURNAL   Hum Mol Genet 7 (12), 1967-1978 (1998)
   PUBMED   9811942
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY061354.1, AF536541.1 and AK049765.1.
            
            On Dec 20, 2006 this sequence version replaced NM_138585.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF536541.1, AK049765.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                BY061354.1         2-99
            99-960              AF536541.1         1-862
            961-1092            AK049765.1         871-1002
            1093-1677           AF536541.1         995-1579
            1678-1750           AK049765.1         1588-1660
            1751-3495           AK049765.1         1662-3406
            3496-3820           AF536541.1         3392-3716
FEATURES             Location/Qualifiers
     source          1..3820
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 35.08 cM"
     gene            1..3820
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /note="calcium homeostasis endoplasmic reticulum protein"
                     /db_xref="GeneID:27967"
                     /db_xref="MGI:MGI:106417"
     exon            1..176
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     CDS             152..2968
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /note="isoform 1 is encoded by transcript variant 1;
                     SR-related CTD associated factor 6"
                     /codon_start=1
                     /product="calcium homeostasis endoplasmic reticulum
                     protein isoform 1"
                     /protein_id="NP_613051.3"
                     /db_xref="CCDS:CCDS40389.1"
                     /db_xref="GeneID:27967"
                     /db_xref="MGI:MGI:106417"
                     /translation="MEMPMPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKF
                     SFLFGGEFYSYYKCKLALEQQQLICKQQAPELEPTSAMPPLPQPPLAPTASLTPAQGT
                     PSMDELIQQSQWSLQQQEQHLLALRQEQVTTAVAHAVEQQMQKLLEETQLDMSEFDNL
                     LQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLI
                     NDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDS
                     IIQQLQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQSLKTQHEEFVSSLAQQQQQ
                     QQQQQQQQPQPQPQPQIQLPQMEADVKATPPPPAPPPASAPAPTIPPTTQPDDNKPPI
                     QMPGSSEYDTSAGVQDPAAAGPRGPGPHEQIPPNKPPWFDQPHPVAPWGQQQPPEQPP
                     YPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDPNWNNQFEGPWNNQ
                     HEPPPWGGAQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFP
                     PRHPFERPPYPHRFDYPQGDFPADMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPP
                     PHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKD
                     IRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEK
                     RNSGPSRSRSRSKSRGRSSSRSSSRSSKSSRSSSRSHSRSRSRSSSRSRSRSRSRSRS
                     SRSRSRSRSRSRSRSKSYSPGRRRRSRSRSPTPPSAAGLGSNSAPPIPDSRLGEENKG
                     HQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSY
                     SFIARMKARDEFSTFGTRKEEKED"
     exon            177..350
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            351..535
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            536..673
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            674..825
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            826..937
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            938..1027
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1307
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            1308..1483
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            1484..1919
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            1920..2158
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            2159..2292
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            2293..2379
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            2380..2523
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            2524..2646
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            2647..2741
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            2742..2927
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     exon            2928..3800
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3618..3623
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /note="hexamer: AATAAA"
     polyA_site      3641
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
     regulatory      3780..3785
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /note="hexamer: AATAAA"
     polyA_site      3800
                     /gene="Cherp"
                     /gene_synonym="5730408I11Rik; D8Wsu96e; DAN16; Scaf6"
                     /note="major polyA site"
ORIGIN      
        1 ggtgtttccc agcgacagcc gtaaatggcg cgcgaagcgg cccgcgaggc cgtcgtaaac
       61 gtcgcccttc gcgccacttc cggccggctt ctgtggccgg tgctggtaag cgatcgtgag
      121 gcggcggagg acgttgccag tggctgcagc catggagatg ccgatgccgc cagatgatca
      181 ggagcttcga aatgtcatcg ataagctcgc tcagtttgtg gctcgcaacg gacccgagtt
      241 cgagaaaatg acgatggaga agcagaagga caaccctaag ttctcgtttc tgtttggagg
      301 cgagttctac agttactaca agtgcaagct ggcactggag cagcaacagc taatctgcaa
      361 gcagcaggcc ccagagctgg agcccacctc agccatgccc cctctgccac aacctccgct
      421 ggctcccaca gcgtccctca ctccggccca gggcacccca tcaatggacg agctcatcca
      481 acagagccag tggagtctcc agcagcagga acagcacctg ctggccctgc gccaggagca
      541 agtaacgaca gccgtggcac atgcagtgga acagcaaatg cagaagctgc tggaagagac
      601 acaactggac atgagcgagt ttgacaacct gctacagccc atcattgaca cctgcacaaa
      661 ggatgccatc tcggctggga agaactggat gttcagcaat gctaagtccc caccacactg
      721 tgagctgatg gcaggccacc tgcgcaaccg catcactgct gatggcgcac acttcgagct
      781 gcggctacac ctcatctatc tgatcaatga cgtgctgcac cactgccagc gcaagcaggc
      841 ccgggagctg ctggctgcct tgcagaaggt ggtagtaccc atctattgca ccagcttcct
      901 ggctgtggag gaggacaaac agcagaagat tgcccggctc ctgcagctct gggaaaagaa
      961 cggctacttt gatgactcca tcattcagca actgcagagc cctgccctgg gacttggtca
     1021 gtatcaggcg actctcatca atgagtactc gtcagtggtg cagcctgtgc agctggcctt
     1081 ccagcagcag atccagagcc tcaagacaca gcatgaagag ttcgtcagca gcttagccca
     1141 gcagcagcag cagcagcaac aacagcagca gcagcagccg cagccacagc cacagccaca
     1201 gattcagctg cctcagatgg aagcagatgt gaaggccaca cccccaccac cagcaccacc
     1261 accagcctca gcacctgccc ccaccatccc accaactacc cagccagatg acaacaagcc
     1321 tcccatccag atgcctggct cttcagagta cgacacctct gcaggtgtcc aggatcctgc
     1381 agctgctggc cctcgaggtc ctggccccca tgagcagatc ccgccaaaca agcccccttg
     1441 gtttgatcag cctcacccag ttgccccttg gggtcaacag cagccccctg agcaaccccc
     1501 atacccacac caccaaggtg gaccacccca ttgcccaccc tggaacaaca gccacgaggg
     1561 catgtggggt gagcagcgag gggaccctgg ctggaatggg cagcgagatg ctccgtggaa
     1621 caaccagcca gatcccaatt ggaataacca gtttgaagga ccatggaaca atcagcatga
     1681 gccaccgccc tggggtggtg cccagcggga gccgcccttc agaatgcagc ggccccccca
     1741 cttccgtggg ccgttcccac cccaccagca gcacccacag ttcaaccagc ctccacatcc
     1801 ccacaacttc aaccggttcc caccccgctt catgcaggat gacttcccac ctcgtcaccc
     1861 ttttgagcgg ccaccctacc ctcaccgctt tgactatccc cagggagact ttcctgcaga
     1921 catgggaccc cctcatcacc accctggcca ccgaatgcca caccctggga tcaatgagca
     1981 cccaccttgg gctgggcccc agcaccctga ctttggccct cctccccacg gcttcaatgg
     2041 ccagcctccc cacatgcggc gacagggccc acctcacatc aaccatgatg accccagcct
     2101 agtccccaat gtgccctact tcgatcttcc agcggggtta atggcccccc ttgtgaagct
     2161 ggaggatcat gagtacaagc ctctggaccc caaagacatc cgcctgccac cccccatgcc
     2221 tcccagtgag aggctactcg cagctgtgga ggccttctac agtccgccct cccatgacag
     2281 gccaaggaac agtgagggct gggagcagaa tggcctctat gagttctttc gagccaagat
     2341 gcgagcacgg cggcgcaagg gccaggagaa gagaaacagc ggcccctcca gatcacgcag
     2401 ccggtccaaa agccgaggcc gctcctcatc tcgctccagc tcccgatcct ccaagtcctc
     2461 acgttcctcc tcccgctcac attcccggtc tcggtcccgc tcctcctctc gctccaggtc
     2521 cagaagccgc agccggtcac gttcctccag aagccgctcg cgctccaggt ccaggtccag
     2581 gtccaggtcc aagtcatact cccctgggag gcggcgacgc tccaggtccc ggagccccac
     2641 cccaccctct gcagctggcc tgggttctaa ttcagcgcct cccataccag actcgaggct
     2701 tggagaagag aataaaggcc atcaaatgct ggtgaagatg ggctggagcg ggtctggtgg
     2761 ccttggtgca aaggaacagg gcattcagga tcccattaag ggtggtgacg tccgggataa
     2821 atgggaccag tacaagggcg tgggtgtggc cctggacgac ccttatgaga actaccgccg
     2881 caacaagagc tactccttca ttgcccgcat gaaagcccga gatgagtttt ccacatttgg
     2941 gactcgaaaa gaagagaagg aagactgacc acaggcttca gcttcgcagt gtggagggct
     3001 tgtcctgcat ttgccctaga ggaggtgctg cagatactac tcgcagtgcc cagatagcaa
     3061 aacaacacca tcccaccatc ccccagccca gagcctaagt cccacccaca gtgctgcaca
     3121 gcccagagag agaaggctgc ctgcactgag cgtggcaacc agaatagcct agcctctgag
     3181 ctgtagaggt cagaaggaat tatggtttgg ctctacttgg ttttgtgtta ggaaaaagga
     3241 atactgaccc cctgaggcag ggattttctg actcctgact cagttcatca gttactttaa
     3301 ttgttatcat ccctttccac aaatgttagc tgtttgcctc tactacctgg acataacttc
     3361 tgacactggg ctaagcgccc ttgggtcagg gaagatggtg tccagagctc ctccatctag
     3421 tgcagcatct tagcttgggg cttctatctg gagaagccaa ttccagcaca gagcatgggg
     3481 tgctgggctc cagccagcac ctcctgtgct gtcatttaat ttgggttcct tagccattcc
     3541 cagagagggg gaggtgaggc ccagaaggag cagcctggtg ccattgtttg tacacaaact
     3601 tttgaaacat tcttataaat aaaatgcaga gtcctctaca atttttcagt atcatataag
     3661 acacttgatt tttgttttag atttcccata cctatgacgt tcagatgtgt ctgactcagg
     3721 ataaacaagc agacacacat gtgctgttaa caattgtgga ttttactgtt ttgccttcca
     3781 ataaagcctt ttgtaaaaga aaaaaaaaaa aaaaaaaaaa
//
