LOCUS       NM_028589                975 bp    mRNA    linear   ROD 09-FEB-2025
DEFINITION  Mus musculus CHD1 helical C-terminal domain containing 1 (Chct1),
            mRNA.
ACCESSION   NM_028589 XM_126139 XM_908592
VERSION     NM_028589.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 975)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 975)
  AUTHORS   Dai,Y., Nie,J., Luo,Z. and Nie,D.
  TITLE     Expression profile analysis of a new testis-specifically expressed
            gene C17ORF64 and its association with cell apoptosis in MCF-7
            cells
  JOURNAL   Mol Biol Rep 48 (2), 1521-1529 (2021)
   PUBMED   33566224
  REMARK    GeneRIF: Expression profile analysis of a new testis-specifically
            expressed gene C17ORF64 and its association with cell apoptosis in
            MCF-7 cells.
REFERENCE   3  (bases 1 to 975)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   4  (bases 1 to 975)
  AUTHORS   Miyata,H., Castaneda,J.M., Fujihara,Y., Yu,Z., Archambeault,D.R.,
            Isotani,A., Kiyozumi,D., Kriseman,M.L., Mashiko,D., Matsumura,T.,
            Matzuk,R.M., Mori,M., Noda,T., Oji,A., Okabe,M.,
            Prunskaite-Hyyrylainen,R., Ramirez-Solis,R., Satouh,Y., Zhang,Q.,
            Ikawa,M. and Matzuk,M.M.
  TITLE     Genome engineering uncovers 54 evolutionarily conserved and
            testis-enriched genes that are not required for male fertility in
            mice
  JOURNAL   Proc Natl Acad Sci U S A 113 (28), 7704-7710 (2016)
   PUBMED   27357688
REFERENCE   5  (bases 1 to 975)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC048674.1 and BB019433.1.
            
            On or before Jul 24, 2009 this sequence version replaced
            XM_908592.2, XM_126139.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC048674.1, CA465843.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-938               BC048674.1         1-938
            939-975             BB019433.1         199-235
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 51.34 cM"
     gene            1..975
                     /gene="Chct1"
                     /gene_synonym="1700125H20Rik"
                     /note="CHD1 helical C-terminal domain containing 1"
                     /db_xref="GeneID:73634"
                     /db_xref="MGI:MGI:1920884"
     exon            1..132
                     /gene="Chct1"
                     /gene_synonym="1700125H20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..792
                     /gene="Chct1"
                     /gene_synonym="1700125H20Rik"
                     /note="uncharacterized protein C17orf64 homolog"
                     /codon_start=1
                     /product="CHD1 helical C-terminal domain containing
                     protein 1"
                     /protein_id="NP_082865.1"
                     /db_xref="CCDS:CCDS48872.1"
                     /db_xref="GeneID:73634"
                     /db_xref="MGI:MGI:1920884"
                     /translation="MEASDWQGGEGDKPLEKVGSVPCLERSSSTVPTGDALVRHAKGL
                     SQDTFKICKEYLRPLKKFLRKLNLPKDLPQKKRIKYTKQSLEALGGHINTFLQHYCRA
                     WEIKHWKKMLWRFVSLFSELEAKQLRRLYKYTKTNQTAKFLAALCPLDAPERSLLANQ
                     EDCLPRLCSAWGLHGNISGMKERLSKMQAPGQEVVMLEEPRSSHCSRGDSLRKLPQKP
                     KLKKKRIKERLESPKSCS"
     exon            133..234
                     /gene="Chct1"
                     /gene_synonym="1700125H20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            235..410
                     /gene="Chct1"
                     /gene_synonym="1700125H20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            411..510
                     /gene="Chct1"
                     /gene_synonym="1700125H20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            511..706
                     /gene="Chct1"
                     /gene_synonym="1700125H20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            707..975
                     /gene="Chct1"
                     /gene_synonym="1700125H20Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      926..931
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Chct1"
                     /gene_synonym="1700125H20Rik"
                     /note="hexamer: AATAAA"
     regulatory      943..948
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Chct1"
                     /gene_synonym="1700125H20Rik"
                     /note="hexamer: AATAAA"
     polyA_site      948
                     /gene="Chct1"
                     /gene_synonym="1700125H20Rik"
     polyA_site      968
                     /gene="Chct1"
                     /gene_synonym="1700125H20Rik"
                     /note="major polyA site"
ORIGIN      
        1 aggtcacaga agcagtaagt tagaagtctg tggggaacct gagactgtgc tatcctggtg
       61 tctgcccacc cagctgttga gatggaagcc tcagattggc aagggggtga aggagacaag
      121 ccactagaga aggtggggag cgttccctgt ttagagagga gctccagcac cgtgcccacg
      181 ggagatgctc tggtccgtca tgccaagggc ctgagccagg ataccttcaa aatttgtaaa
      241 gaatacctga ggcctctgaa gaagttcctt cgaaagttga acctgcccaa ggaccttccc
      301 cagaagaaaa ggataaagta tacgaagcag agccttgagg ccctaggggg ccatattaac
      361 acctttctgc agcattattg ccgagcctgg gagatcaagc actggaaaaa aatgctgtgg
      421 cggtttgtct ccctcttctc agagctggaa gcaaagcagc ttcgtcggct ctataagtac
      481 accaagacga accagacggc caagttcctg gccgcactct gccccttgga tgcaccggag
      541 agatcactgc ttgccaacca agaggactgt cttcccaggc tctgcagtgc ctggggcttg
      601 catggaaata tcagcggcat gaaggagagg ttgtccaaga tgcaagcccc tggccaagaa
      661 gttgtcatgc tggaggagcc aaggtcctca cactgctcca gaggagattc tttaaggaaa
      721 cttcctcaaa aaccaaagct gaagaaaaag aggattaagg aaagactaga atctcccaag
      781 agctgctcct aagaagaccc acaggggtgg agggcagctc tctctggctc ccttgggcac
      841 ttgcatgtat actctggagg atgaaggggt tgaagagggt aaagaaggtt tacttcatca
      901 aaaggatact caatttctaa gtataaataa atgggaaata ataataaatg ggaaataata
      961 attcttaaga cagtg
//
