LOCUS       NM_025395               1313 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus coiled-coil-helix-coiled-coil-helix domain containing
            5 (Chchd5), mRNA.
ACCESSION   NM_025395 XM_001003806
VERSION     NM_025395.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1313)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY335381.1, AK013018.1, BB792161.1 and W41426.1.
            
            On Nov 21, 2008 this sequence version replaced NM_025395.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK003936.1, AK013018.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-122               BY335381.1         4-125
            123-964             AK013018.1         2-843
            965-1297            BB792161.1         73-405
            1298-1313           W41426.1           334-349
FEATURES             Location/Qualifiers
     source          1..1313
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 62.72 cM"
     gene            1..1313
                     /gene="Chchd5"
                     /gene_synonym="1110027L01Rik"
                     /note="coiled-coil-helix-coiled-coil-helix domain
                     containing 5"
                     /db_xref="GeneID:66170"
                     /db_xref="MGI:MGI:1913420"
     exon            1..158
                     /gene="Chchd5"
                     /gene_synonym="1110027L01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             157..489
                     /gene="Chchd5"
                     /gene_synonym="1110027L01Rik"
                     /codon_start=1
                     /product="coiled-coil-helix-coiled-coil-helix
                     domain-containing protein 5"
                     /protein_id="NP_079671.1"
                     /db_xref="CCDS:CCDS16721.1"
                     /db_xref="GeneID:66170"
                     /db_xref="MGI:MGI:1913420"
                     /translation="MQAALEVTARYCSRELDQYGQCVAAKPESWHRDCHHLKMSIARC
                     TSSHPIIRQIRQACAEPFEAFEKCLRLNEAAVGNCAEHMRRFLQCAEQVQPPSSPTTG
                     EAQPLPAS"
     exon            159..299
                     /gene="Chchd5"
                     /gene_synonym="1110027L01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            300..465
                     /gene="Chchd5"
                     /gene_synonym="1110027L01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            466..1303
                     /gene="Chchd5"
                     /gene_synonym="1110027L01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      627..632
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Chchd5"
                     /gene_synonym="1110027L01Rik"
                     /note="hexamer: AATAAA"
     polyA_site      652
                     /gene="Chchd5"
                     /gene_synonym="1110027L01Rik"
                     /note="major polyA site"
     regulatory      1275..1280
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Chchd5"
                     /gene_synonym="1110027L01Rik"
                     /note="hexamer: AATAAA"
     regulatory      1282..1287
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Chchd5"
                     /gene_synonym="1110027L01Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1299
                     /gene="Chchd5"
                     /gene_synonym="1110027L01Rik"
                     /note="major polyA site"
     polyA_site      1303
                     /gene="Chchd5"
                     /gene_synonym="1110027L01Rik"
                     /note="major polyA site"
ORIGIN      
        1 catgaaggtt ggaccaatgt gggatgagtg gcagggacgc tcgacgaccg gaagagtgag
       61 gccaggaggt ctgggttggg cgccgccata acaacctgat accggaaaag gcgggtctct
      121 tctccctgac tgatcggcgc ttgaattcgc ctggagatgc aggcagccct ggaagtcact
      181 gctcgatact gcagccgaga gctggatcag tatggccaat gtgtggcagc caagccagag
      241 tcgtggcatc gagattgtca ccaccttaag atgagcattg ctcgctgcac gtcctcccac
      301 ccgatcatcc gccagatccg ccaggcctgt gctgagccct ttgaagcctt tgagaagtgt
      361 cttcgcttga atgaggcagc agtgggcaac tgtgctgaac acatgcgccg cttcctgcag
      421 tgtgcagagc aggtgcagcc accaagttca cccacaactg gagaggcaca gcccctgcct
      481 gcctcctgac aaccccttgg actttgagaa aaccgacatg attgaccgtc ccacttgatg
      541 tcctcgccta gaagagtgac aagagttttg gagtcttgag ggccctgctg tgtgtctggc
      601 gctcctggac atcaggacac taaataaata aagactgagt actgggctct gattccagcc
      661 ttcagtattg aaagggagaa gagcgatgag agaaagctta ctcatccatc ccccggcttt
      721 ccttggtctg ccaagtgagc gctcaggagg ggcctgggtg ctcttgttct aggctcagga
      781 gtaggatgac tcagccagcc ctccctggcc ctgctgtctg tgtgttggag gtaggcttcc
      841 ctcccactcg tagtcaacca gataaatgtg taagtctagg cagtcctgaa gctcactacg
      901 tagacctcga tggattcaga ttcaacagcc gtctcctgag tgccagggct ctaggtgtga
      961 accacaatgc ccagctttcc acacacatgc cagtgggcta tgccccgcct accattagtg
     1021 cccacagcct acattcacta caccgtaaca ctgttctctt gagacgtggc agaggagcaa
     1081 taaatagcac atttcttcca ctgctgaatt agaaccagtt gagcagtaga catggacttt
     1141 gggcagtgga cataaaaata ctgatcttat tgaaaacagc agtgcggaga cagaagcagg
     1201 gatcaaaagg tcaaggtcgt cctttgctgc atggtttgag gccagactgg gccacctgag
     1261 gccccttctc gttaaataaa cattaaaaat tgaaagccgg aaaaaaaaaa aaa
//
