LOCUS       NM_001363455            3980 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus chromosome alignment maintaining phosphoprotein 1
            (Champ1), transcript variant 1, mRNA.
ACCESSION   NM_001363455 XM_006508679
VERSION     NM_001363455.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3980)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3980)
  AUTHORS   Zhou,J., Hamdan,H., Yalamanchili,H.K., Pang,K., Pohodich,A.E.,
            Lopez,J., Shao,Y., Oses-Prieto,J.A., Li,L., Kim,W., Durham,M.A.,
            Bajikar,S.S., Palmer,D.J., Ng,P., Thompson,M.L., Bebin,E.M.,
            Muller,A.J., Kuechler,A., Kampmeier,A., Haack,T.B.,
            Burlingame,A.L., Liu,Z., Rasband,M.N. and Zoghbi,H.Y.
  TITLE     Disruption of MeCP2-TCF20 complex underlies distinct
            neurodevelopmental disorders
  JOURNAL   Proc Natl Acad Sci U S A 119 (4) (2022)
   PUBMED   35074918
REFERENCE   3  (bases 1 to 3980)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3980)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 3980)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC139186.4.
            
            On Mar 28, 2023 this sequence version replaced NM_001363455.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 both encode the same protein.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK139963.1, SRR13422600.1487267.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849379, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-140               AC139186.4         97692-97831
            141-3980            AC139186.4         105791-109630
FEATURES             Location/Qualifiers
     source          1..3980
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 6.4 cM"
     gene            1..3980
                     /gene="Champ1"
                     /gene_synonym="D8Ertd457e; D8Ertd569e; mKIAA1802; Zfp828;
                     Znf828"
                     /note="chromosome alignment maintaining phosphoprotein 1"
                     /db_xref="GeneID:101994"
                     /db_xref="MGI:MGI:1196398"
     exon            1..140
                     /gene="Champ1"
                     /gene_synonym="D8Ertd457e; D8Ertd569e; mKIAA1802; Zfp828;
                     Znf828"
                     /inference="alignment:Splign:2.1.0"
     exon            141..3980
                     /gene="Champ1"
                     /gene_synonym="D8Ertd457e; D8Ertd569e; mKIAA1802; Zfp828;
                     Znf828"
                     /inference="alignment:Splign:2.1.0"
     CDS             187..2595
                     /gene="Champ1"
                     /gene_synonym="D8Ertd457e; D8Ertd569e; mKIAA1802; Zfp828;
                     Znf828"
                     /note="zinc finger protein 828"
                     /codon_start=1
                     /product="chromosome alignment-maintaining phosphoprotein
                     1"
                     /protein_id="NP_001350384.1"
                     /db_xref="CCDS:CCDS22116.1"
                     /db_xref="GeneID:101994"
                     /db_xref="MGI:MGI:1196398"
                     /translation="MEVCQELRKPALSLECGHCSFRGTDYENVQLHMGSIHPEFCDDM
                     DAGGLGKLIFYQKSAKLFHCHKCFFTSKLYANVYYHITARHAASDKWSEQPKEQPSKD
                     TESGKSPSPPERQNPAFDPAEARPTPALPMEAQKTSPSLCPESQASGPPVLEPQGAGP
                     LISPEPQAPCLPAEASKAAPVPCPERVDPPCELPELEKPERGPSPESVKSALVSSKPP
                     KHSSFADTGAAPSALSPESPVLATSPEPWGPSLSASPESRKPARTASPEPRKPSPAES
                     PELWKPFPAIASEPRRPTPAVSPGSWKPGPPGSPRPWKSSPSATSGPWKSSKPVQPMS
                     PGPWKPIPSVSPGPWKPAPSMSTASWKSSVSSGSWKTPPTSPESWKSGPPELRKTALP
                     LSPEHWKAVPPVSPELRRPGPPLSPEIRSPAGSPELKKPSSSPDLWKVSPDQRKTSPA
                     SLDFPEPQKSSCGSPPDLWKSSFIMESQKPNVFSETRKHTASGSSESPKVASDIWKPV
                     LSIDAEPRKSTLFPEPTKAVLPASPEPRKRALFPESRKHVFLPELPKSAVFSDAQKAP
                     ELSEEIQLEAVDNAKCDSLAQEGLLATPKKLLDEALSPSSKKLKKDSQENSDAELSSS
                     EYIRADLDTLDTKGQESSSDQEQVDVESIDFSKENKMEMGSTEQAKNVLQFTEEKEAF
                     ISEEEIAKYMKRGKGKYYCKICCCRAMKKGAVLHHLVNKHNVHSPYKCTICGKAFLLE
                     SLLKNHVAAHGQSLLKCPRCNFESNFPRGFKKHLTHCQSRHNEEVNKKLMEALESPLE
                     EQQI"
     regulatory      3959..3964
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Champ1"
                     /gene_synonym="D8Ertd457e; D8Ertd569e; mKIAA1802; Zfp828;
                     Znf828"
                     /note="hexamer: ATTAAA"
     polyA_site      3980
                     /gene="Champ1"
                     /gene_synonym="D8Ertd457e; D8Ertd569e; mKIAA1802; Zfp828;
                     Znf828"
                     /note="major polyA site"
ORIGIN      
        1 gcggtacttc ccggctggtc ctgcgtccag ccgccattcc cgaggccgca cagccagccc
       61 agagtttcct gtgggcgttt cctcctcttc acttcaggac gcctcgccgg atggtgagga
      121 gcgggcgggc gggcgcctcg cactgttgaa gtctttcaag tgcagttcta cggcgtgtga
      181 cagaagatgg aagtgtgtca ggaattgagg aaaccagcgc taagcctgga gtgtgggcac
      241 tgcagtttca gaggcaccga ttatgagaat gtgcagctcc acatgggctc cattcatcct
      301 gagttctgtg atgatatgga tgccgggggc ctgggcaagc tcatctttta ccagaagagt
      361 gcaaagctct tccattgcca taagtgcttc ttcaccagca agctgtacgc caatgtgtac
      421 tatcacatca cggccagaca cgcagcctcg gacaagtgga gtgagcagcc gaaagagcag
      481 ccgagcaaag acaccgagtc tgggaaaagc ccttcccctc ctgagcggca gaacccagcc
      541 tttgacccag cagaggcgag gcccactcca gccctcccca tggaagcaca gaaaacgagc
      601 ccgagcttgt gtccagagtc acaggcttct ggtcctccag ttctggagcc tcagggcgct
      661 ggtcctctta tttcgcccga gccccaagcc ccttgtcttc ctgctgaggc ctcaaaagct
      721 gctcctgttc cttgccctga gcgtgtagac ccaccctgtg agcttcctga gctggagaag
      781 cctgagcgag gcccttctcc tgagtcagtc aagtctgctc ttgtcagctc caaaccccca
      841 aagcactctt cctttgcaga cacaggggct gccccttcag ctttgtctcc agagtcacca
      901 gtactggcca cttcccctga accttgggga ccatccctca gtgcatctcc agagtctcgg
      961 aagccagcga ggactgcctc ccctgagcca aggaagccat ccccagcaga gtctcctgaa
     1021 ctttggaagc cattccctgc catcgcttca gagcctcgga gaccaacccc agcagtgtcg
     1081 ccaggttcct ggaagccagg gccgcctggt tctcctaggc cttggaaatc cagtccttca
     1141 gcaacatcag gaccgtggaa gtcatctaaa cctgttcaac ctatgtctcc tggaccttgg
     1201 aaaccaatac cttctgtatc acctgggcct tggaaacctg ccccatctat gtccactgca
     1261 tcctggaagt cttcagtctc atctggttcc tggaaaacac cacccacatc tccagagtca
     1321 tggaagtctg gcccacctga actccggaag acagcccttc ccttgtctcc tgagcactgg
     1381 aaggcagtgc ctcccgtgtc tcctgagctc cgcagaccag gcccaccact ttccccagag
     1441 atccgaagtc cagcaggttc tccagagctc aagaagcctt caagctcacc agacctttgg
     1501 aaggtttctc ctgaccagcg gaaaacttct cctgcttcac ttgatttccc tgagccccag
     1561 aaaagttctt gtggtagtcc tcctgatctc tggaagtctt ccttcattat ggagtctcag
     1621 aaacctaacg tcttctctga gacgaggaag cacactgctt cgggctcatc tgagtcaccg
     1681 aaggtagcgt cagacatatg gaagcctgtc ttgtctatcg atgctgagcc taggaagtcc
     1741 acactgtttc ctgagcccac caaagcagtc cttcctgctt ctcccgagcc acggaaacgc
     1801 gcacttttcc cagagtcccg gaagcacgtg tttctacctg aacttcccaa atccgctgtg
     1861 ttctcagacg cccagaaggc ccctgagctt agtgaggaga tacaacttga agctgtggat
     1921 aatgcaaaat gcgatagtct ggcccaggaa gggcttctgg ccacccccaa gaaactgtta
     1981 gacgaggctt tatctccttc ttcaaagaag ctcaagaagg acagccagga gaactcggat
     2041 gccgagctca gtagcagtga atacatcaga gcagatttag acacgttgga cacgaagggc
     2101 caggagtcaa gcagcgatca ggaacaggtg gatgtggaat cgattgattt tagcaaagag
     2161 aacaaaatgg agatgggtag tacagagcaa gccaaaaatg tgcttcagtt caccgaggag
     2221 aaggaggcct tcatctctga ggaggagatc gcaaagtaca tgaagcgtgg gaaagggaaa
     2281 tactactgca aaatctgttg ctgtcgggcc atgaaaaagg gcgctgtctt gcaccacttg
     2341 gttaataagc acaatgtcca cagtccatat aagtgcacaa tttgtggaaa agcgtttctt
     2401 ttggagtctc ttcttaaaaa ccacgtagca gcccacgggc agagtttact taaatgtcca
     2461 cgctgtaatt ttgaatcaaa tttcccaaga ggctttaaga aacacttaac tcactgtcag
     2521 agccggcata atgaagaggt gaataagaag ctgatggaag ccctggagtc gccattggag
     2581 gagcagcaga tttgatcttc agacagtggc ccttgctcta cagtgttgct tgccagactc
     2641 ttaggttgtt gagtagccta gatggaccag tagccagtat gtgtgtagtg gtgtatcctg
     2701 gtctgtaagt agtgttacaa aaaataagta cttggttatt ttttcatatg atccgttgtt
     2761 tatgtggatg gctattttat aagtcttaat acatttctgt tatagattcc agatggatat
     2821 aactcatttt ccttaagttt tatttttgtt ataatacaag gagtggggga aaataggcag
     2881 gccatttaat aaacaagtaa gtttaaacct aatcagagtc tttgtcctcc accatgtgtg
     2941 tgtgtgtaac tgatttcaga acatagaact tattagatga gggctcagtg gtagagcctc
     3001 gactagcatg ttttgcatac ttatcagttc cagggttcta tccccaatac ctttaaaaaa
     3061 aaaaagtgga atgtatgaga attgagcatg aaaagtaaat ttgagaaaaa ttttgttaaa
     3121 tgtacttttg aaacatgtct tatatcttat tttttcatgt aaaattagtt tataagtctt
     3181 taatactttc atgatgatca ttaatgctgt tacagagcgg cacttctcgc cctgggggta
     3241 gaatgaccct ttcacagaaa gcagagatat tacataatgg tgatagcaaa gttagttata
     3301 aagcagcaat gaaaatgtga tggttggagg ggccaccatt acatgaggaa ctgtattgaa
     3361 gggtcacagc gttaggaaag tcgagaatgc tgttgaagag agttggagtc ttagagccgc
     3421 tggttttctg ctgctaggac aactgagtgg gtttgcaaag cagtgttggt attttctgca
     3481 ggctgagaag accacatgat taaggccacc gcttccctct agttgtttgc aatggcgtct
     3541 tccttgtggg gtcttgccct tcacgtccct gcctgatcac atcaacagat ggtcttcact
     3601 tgccaaacgt gttagtgtct gtacctccta ccctgggtct tatgtgcttt ctgtcgggtg
     3661 gggcttgaga cccaagtaat gagcaggagc tcaaagtctt ccagattgac agtaaaaggt
     3721 taataaacag cgctggtgcg gcagccagcg atccacactg gatgccgact tggttggttg
     3781 ggagctgaat tgatgagggc tcactgtatc tcaccgtggg cagcacagtg aagccctgcc
     3841 tcaaaagcat tcctgtctga aagacatgtc gctttggttt cacatggttt tgccattgta
     3901 aataccttgt atctctctgt ggattattct aatagtttgt taaatgtgta tcaaccaaat
     3961 taaaaaggct ttcacgataa
//
