LOCUS       NM_001164320            2547 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus chondroadherin-like (Chadl), mRNA.
ACCESSION   NM_001164320
VERSION     NM_001164320.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2547)
  AUTHORS   Rutledge,E.A., Benazet,J.D. and McMahon,A.P.
  TITLE     Cellular heterogeneity in the ureteric progenitor niche and
            distinct profiles of branching morphogenesis in organ development
  JOURNAL   Development 144 (17), 3177-3188 (2017)
   PUBMED   28705898
REFERENCE   2  (bases 1 to 2547)
  AUTHORS   Tillgren,V., Ho,J.C., Onnerfjord,P. and Kalamajski,S.
  TITLE     The novel small leucine-rich protein chondroadherin-like (CHADL) is
            expressed in cartilage and modulates chondrocyte differentiation
  JOURNAL   J Biol Chem 290 (2), 918-925 (2015)
   PUBMED   25451920
REFERENCE   3  (bases 1 to 2547)
  AUTHORS   Moffatt,P., Salois,P., Gaumond,M.H., St-Amant,N., Godin,E. and
            Lanctot,C.
  TITLE     Engineered viruses to select genes encoding secreted and
            membrane-bound proteins in mammalian cells
  JOURNAL   Nucleic Acids Res 30 (19), 4285-4294 (2002)
   PUBMED   12364608
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC102262.10.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4265469.1,
                                           SRR7652917.394026.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-59                AC102262.10        159391-159449       c
            60-234              AC102262.10        158012-158186       c
            235-1944            AC102262.10        155696-157405       c
            1945-2111           AC102262.10        155149-155315       c
            2112-2310           AC102262.10        154270-154468       c
            2311-2547           AC102262.10        148328-148564       c
FEATURES             Location/Qualifiers
     source          1..2547
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 38.2 cM"
     gene            1..2547
                     /gene="Chadl"
                     /gene_synonym="D930017K21Rik"
                     /note="chondroadherin-like"
                     /db_xref="GeneID:214685"
                     /db_xref="MGI:MGI:3036284"
     exon            1..59
                     /gene="Chadl"
                     /gene_synonym="D930017K21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..2298
                     /gene="Chadl"
                     /gene_synonym="D930017K21Rik"
                     /note="chondroadherin pseudogene; leucine rich repeat
                     containing 15 pseudogene; chondroadherin-like protein"
                     /codon_start=1
                     /product="chondroadherin-like protein precursor"
                     /protein_id="NP_001157792.1"
                     /db_xref="CCDS:CCDS49677.1"
                     /db_xref="GeneID:214685"
                     /db_xref="MGI:MGI:3036284"
                     /translation="MERPQSSIWVFMLLLFMVLLQSPAWHVAAQRCPQTCVCDNSRRH
                     VTCRHQNLTEVPNTIPELTQRLDLQGNILKVLPAAAFQDLPHLTHLDLRNCQVEMVAE
                     GAFRGLGRLLLLNLASNRLSTLPQEALDGLGSLRRLELEGNMLEELRPGTFGALGSLT
                     TLNLAHNALVYLPAMAFQGLLRTRWLQLSHNALSVLAPEALAGLPALRRLSLHHNELQ
                     ALPGAALSQARSLARLELGHNPLTYTGEEDGLALPGLRELALDHGSLQALGPRAFAHC
                     PRLHTLDLRGNQLTTLPPLQVPGQLRRLRLQGNPLWCACHARPLLEWLVRARVRSDGA
                     CRGPRRLRGEALDTLRPSDLRCPGDAAAGDGDGDEDEDRPAGPRAPPLRSPHGEAAWA
                     TPCPPACACVAETRHSTCDGRGLQAVPRGFPNDTQLLDLRRNHFPSVPRAAFPGLRHL
                     VSLHLQHCGVAELEPGALAGLDRLLYLYLSHNQLSGLSAAALEGAPNLGYLYLEHNRF
                     LRIPGTALRALPTLVSLHLQDNAVDRLAPGDLAGARALRCLYLSGNHITQVSPGALGP
                     ARELEKLHLDRNRLREVPTGALEGLPALKELQLSGNPLRALPDGAFQPVGRSLQQLFL
                     NSSDLEQISPRAFSGLGKGLRSLYLHKNQLQSLPAPLGLSGLELVDLSGNPFHCDCQL
                     LPLHRWLTGLNLRVGATCATPPSVRGQKVKVAAPVFEACPGWTARKAKRTPTSRGSAR
                     RTPSLSRH"
     exon            60..234
                     /gene="Chadl"
                     /gene_synonym="D930017K21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            235..1944
                     /gene="Chadl"
                     /gene_synonym="D930017K21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1945..2111
                     /gene="Chadl"
                     /gene_synonym="D930017K21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2112..2310
                     /gene="Chadl"
                     /gene_synonym="D930017K21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2311..2547
                     /gene="Chadl"
                     /gene_synonym="D930017K21Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2524..2529
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Chadl"
                     /gene_synonym="D930017K21Rik"
                     /note="hexamer: AACAAA"
     polyA_site      2542
                     /gene="Chadl"
                     /gene_synonym="D930017K21Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggtctttccc ttgtgtgggg cctccagaca aggctggcag ttccagtcgg catggagagg
       61 ccccagagct ccatctgggt ctttatgctg ttgctgttca tggtgttgct ccagagccca
      121 gcctggcacg tagctgccca gcgatgccca cagacctgtg tctgcgacaa ctcaagacgg
      181 catgttacct gccggcacca gaacctcacc gaggtgccaa acaccatccc tgagctgacc
      241 cagaggctgg acctccaggg caatatactg aaggtcctcc ctgcagcggc cttccaggac
      301 ctgccccacc tcacgcatct ggacctgcgg aactgtcagg tggagatggt ggccgagggt
      361 gccttccgtg gcctgggtcg cctgctcctc ctcaacctgg cttccaaccg cctgagcacc
      421 ctgccccagg aggcgctgga cgggctgggc tcgctgaggc gcctggagct ggaggggaac
      481 atgttggagg agctgcgccc ggggaccttc ggcgccctgg gctcgctgac cactctcaac
      541 ttggcccaca acgccctggt ctacctgccc gccatggcct tccaggggct gctgcgcacc
      601 cgctggctgc agctgtctca caatgcgctc agcgtcctgg cccccgaggc tctggccggc
      661 ctgccggcgc tgcgccgtct cagcctgcac cacaacgagc tgcaggccct gcccggggcc
      721 gccctgtccc aggcccgcag cctggcgcgg ctggagctgg gtcacaaccc gctcacctac
      781 acgggagagg aggacggcct ggcgctgccc ggcctgcggg agctcgcact ggaccacggg
      841 tccctgcagg ccctggggcc ccgggccttc gcccactgcc cgcgcctgca caccctcgac
      901 ctccgcggga accagctcac caccctgccc ccgctacagg tccccggcca gctgcgccgc
      961 ctgcggctgc agggcaaccc gctgtggtgc gcctgccacg cacggcccct gctcgagtgg
     1021 ctggtgcgcg ctcgggtgcg ctcggatggc gcgtgccggg gcccgcggcg cctgcgaggc
     1081 gaggccctgg atacgctgcg gccctctgac ctgcgctgcc cgggcgacgc ggcggcgggg
     1141 gacggggatg gggacgagga cgaggaccgg ccggccggtc cccgcgctcc tcctcttcgc
     1201 tccccgcacg gagaggccgc gtgggccacg ccctgccctc cagcctgcgc gtgcgtcgcc
     1261 gagacccggc acagcacttg cgacggccgc ggcctgcagg ccgtgccccg cggcttcccc
     1321 aacgacaccc agctcctgga cctgaggcgc aaccacttcc cctcggtgcc ccgcgcggcc
     1381 ttcccgggct tgcgccactt ggtgtcgctg cacctgcagc actgcggcgt cgcggagctg
     1441 gagcccggcg ccttggccgg cctggaccgc ctgctctatc tctacctctc ccacaaccag
     1501 ctctcgggcc tgagcgccgc cgccctcgaa ggggccccca acctgggcta cctgtacctg
     1561 gagcacaacc gcttcctgag gatcccgggg accgctctgc gggccctacc cacccttgtc
     1621 tcgctacacc tccaggacaa cgcggtggac cgcctggcgc ccggggatct ggcaggagcg
     1681 cgggctttgc gctgccttta cctgagtggc aatcacatca cccaggtttc acccggggcg
     1741 ctcggtccag cgcgggagct ggagaagctg cacctcgaca gaaaccggct gcgagaggtg
     1801 ccgactggag ccttggaggg gctgccggcg ctcaaggagc tgcagctctc ggggaacccg
     1861 ctccgggctc ttccagacgg cgcctttcag cccgtggggc ggtcgctgca gcagctcttc
     1921 ctgaatagca gtgacctgga gcagatttct cccagggcct tctcaggcct gggaaaaggg
     1981 ctgcggagct tgtacctgca caagaatcaa cttcagtccc tgcctgcccc gctggggctc
     2041 agcgggctgg agctggtcga cctcagcggt aatcctttcc actgtgactg ccagctgctc
     2101 ccgctgcaca ggtggctcac tgggctgaac ctgcgggtgg gtgccacctg tgccacccct
     2161 cccagtgtcc gtggccagaa ggtgaaggtt gcagctcctg tctttgaagc ctgcccaggc
     2221 tggactgcca ggaaggccaa gaggacacca acctccagag gcagtgccag gagaactccc
     2281 agcctcagcc gacattgagg aacagacaag gtagagaaac aaagagacca catctgagag
     2341 tggagcagcc tgcccctgac cgctgaccct acccagccca ccggctctta ctgtcatcag
     2401 gaactggttc cgagaccccc aaagcctcaa ggttgtcctc cagtaagggt ttcttggagc
     2461 cctgtctgag gggccgagtc ttggctgatg ggattctttt ccctatgaat aaaaataaaa
     2521 aaaaacaaaa acaaaaacaa aaccaaa
//
