LOCUS       NM_178647               4404 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus CGG triplet repeat binding protein 1 (Cggbp1),
            transcript variant 1, mRNA.
ACCESSION   NM_178647
VERSION     NM_178647.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4404)
  AUTHORS   Bulfone,A., Carotenuto,P., Faedo,A., Aglio,V., Garzia,L.,
            Bello,A.M., Basile,A., Andre,A., Cocchia,M., Guardiola,O.,
            Ballabio,A., Rubenstein,J.L. and Zollo,M.
  TITLE     Telencephalic embryonic subtractive sequences: a unique collection
            of neurodevelopmental genes
  JOURNAL   J Neurosci 25 (33), 7586-7600 (2005)
   PUBMED   16107646
REFERENCE   2  (bases 1 to 4404)
  AUTHORS   Hamatani,T., Falco,G., Carter,M.G., Akutsu,H., Stagg,C.A.,
            Sharov,A.A., Dudekula,D.B., VanBuren,V. and Ko,M.S.
  TITLE     Age-associated alteration of gene expression patterns in mouse
            oocytes
  JOURNAL   Hum Mol Genet 13 (19), 2263-2278 (2004)
   PUBMED   15317747
REFERENCE   3  (bases 1 to 4404)
  AUTHORS   Ficker,M., Powles,N., Warr,N., Pirvola,U. and Maconochie,M.
  TITLE     Analysis of genes from inner ear developmental-stage cDNA
            subtraction reveals molecular regionalization of the otic capsule
  JOURNAL   Dev Biol 268 (1), 7-23 (2004)
   PUBMED   15031101
REFERENCE   4  (bases 1 to 4404)
  AUTHORS   Naumann,F., Remus,R., Schmitz,B. and Doerfler,W.
  TITLE     Gene structure and expression of the 5'-(CGG)(n)-3'-binding protein
            (CGGBP1)
  JOURNAL   Genomics 83 (1), 106-118 (2004)
   PUBMED   14667814
  REMARK    GeneRIF: Cggbp1 mRNAs of 1.2 and 4.5 kb are transcribed at varying
            ratios in embryonic, fetal tissues.
REFERENCE   5  (bases 1 to 4404)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT030641.11.
            
            On Oct 27, 2017 this sequence version replaced NM_178647.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC043097.1, AK049631.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-236               CT030641.11        16712-16947         c
            237-463             CT030641.11        15923-16149         c
            464-4404            CT030641.11        9457-13397          c
FEATURES             Location/Qualifiers
     source          1..4404
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 37.1 cM"
     gene            1..4404
                     /gene="Cggbp1"
                     /note="CGG triplet repeat binding protein 1"
                     /db_xref="GeneID:106143"
                     /db_xref="MGI:MGI:2146370"
     exon            1..236
                     /gene="Cggbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            237..463
                     /gene="Cggbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            464..4404
                     /gene="Cggbp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             486..989
                     /gene="Cggbp1"
                     /note="CGG-binding protein 1; 20 kDa CGG-binding protein;
                     p20-CGGBP DNA-binding protein"
                     /codon_start=1
                     /product="CGG triplet repeat-binding protein 1"
                     /protein_id="NP_848762.1"
                     /db_xref="CCDS:CCDS28266.1"
                     /db_xref="GeneID:106143"
                     /db_xref="MGI:MGI:2146370"
                     /translation="MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCT
                     SCNVVLNHVRKSAISDHLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSPAQTEKAS
                     VIQDFVKMCLEANIPLEKADHPAVRAFLSRHVKNGGSIPKSDQLRRAYLPDGYENENQ
                     LLSSQDC"
     regulatory      4274..4279
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cggbp1"
                     /note="hexamer: ATTAAA"
     polyA_site      4294
                     /gene="Cggbp1"
                     /note="major polyA site"
ORIGIN      
        1 ggcgcggcag gggacacggc ggccgcggcg gagctcgctc gggcggcggc gacggcggtg
       61 gcagcggcag gagcagcggc tgaagcagcg gcggaagcag cggcggccgc aacgggatct
      121 ccttcatccc gttgctctgc cctttcttcc tcctctcttc cttcctggcg agggctcgtg
      181 cacttcccct aacggcggcc cgctcctacg gtcccgaaga gctgggaagg cggaagtaaa
      241 gacatgactt cccggcgcca ccgggaaaat agggtgcaag cccaggaact gtttccccac
      301 caccacctgt tgaaaaactg agtcgaaggc gtctccgggg tctgaacgaa cgcgaagtcg
      361 ctcggattgg atgcgtctgt ggttttgcat ccagaaaact gtcactactt aatatcaagg
      421 aaaaacaaac aaacaaacaa aaacccgact ggaaattaag ctgaagaacc ttattcagag
      481 acaaaatgga acgatttgtt gtaacagcac cacctgctcg aaatcgttct aagactgctt
      541 tgtacgtaac ccctctggat cgagtcactg aatttggagg tgagcttcat gaggatggag
      601 gcaaactctt ctgcacctct tgcaatgtgg tgctgaatca tgttcgcaag tctgccatta
      661 gtgaccacct caagtcaaag actcatacaa agaggaaggc agaatttgaa gagcaaaatg
      721 tgagaaagaa gcagaggccc ctgactgcat cgcttcagtg caacagtcct gcgcaaacag
      781 agaaagccag tgttatccag gactttgtga aaatgtgcct ggaagccaac atccccctgg
      841 agaaggccga tcatcccgca gtgcgagcgt tcctgtcccg gcatgtgaag aacggagggt
      901 ccatacctaa gtcagaccag ctgaggcgag catatctgcc tgatggctac gagaatgaaa
      961 atcagctcct cagctcacaa gattgttgac gaggcagtta atgaccattg tgatcaagat
     1021 aaataatgtg gagtattaaa gttaatgtgt tgattgtgtg gttcattttt atatttattt
     1081 taaatcatgt gatacagaat agttttgcaa tgtgtatata gttttaggca aaagaaagaa
     1141 acctcactgc aaaacttact gctaatttta agtcaccgat ggtgtaaagt aaaacttacc
     1201 tatggagtgt attaggctat ctgaaacccg gtggttatcg ttaaaactca tggatgttct
     1261 cctgaaatgt ttgtgcatgg aagaacttcc ttgcattgta gccctgttgc catgtatggt
     1321 ttttgttttt tcttgtgagg ttacgtaatg atttggattg agaactagcc tagaaaactg
     1381 aagctgctgc caggctatac ctctcacagg accttaaaga agctcacatt cttttcaaag
     1441 tggaatagta ggccggaaat gttcttagag cttgagatct ctaggagaaa tgactgttca
     1501 aattacattc tacttgtatg tgaaataatt gcttaacctt cacttccttg tggtcgcttt
     1561 taaagacata tttagtagca gcttcaagtg actaaaagac taaaatctct cttagtgtct
     1621 ttgacaaaag ccatggggga ttttgcagtg atgagatttt agtcttcaac tatgaacaaa
     1681 aattttcaaa ccatagtttt catgttaagt agcatcctgg atttgcaaac ttttttatgt
     1741 cttggtatta agactattaa gacagtcttg tagtcttaat ttaaatttaa atacactgtg
     1801 gttctgtttt ctctttttac agggaattgg ttactttttg gctgacaaca aataagaaaa
     1861 ttgctttcta tacattaatt tttccataag attttataag agtttattta ggtaaataga
     1921 ctagaaatga gttttaaaag tttcaccttt actgctttgc ctctggtgat gcaggtttta
     1981 aaacttggat gctaaacagt gcagaaaacg aggcaagaac tttatagtaa aataaagcag
     2041 gatgctgagt caggaaataa tcagctctgt caaaggtcaa ccgtgtttag gttttctaca
     2101 cctcactctt ctgtaagctt attaggagtc atttagctca gagaagtcct cttcatcaaa
     2161 tccggattat attttttaaa agtttagtaa ctgaagactt agattagagc tttaatatta
     2221 aaaaaaaatc aaatagttga aaacattgaa gttatatttc tattctaaat cagtggcaag
     2281 atgccctgat tgtgacttgg agttatcttt gaggtcattg tgccacaaat ttccattaaa
     2341 caaagccaaa gttaatagaa aataatttgt gggttttgtg ctttgatttt ttttttcccc
     2401 cgtcacaggg tgtttctaca tagccctggc agtcctggaa ctcactagag gctagcctca
     2461 agacccacct gcctctttcc ctcgtgagtg ctgggattaa tggcgtgtac tatcacgccc
     2521 agcaataatt tgtgttttta agaacatctt gtcttatggg tcttacagat ttaacattcc
     2581 caattcaggt tgtcaaagtg accacttgtt tttattttaa aagcctgcta tggaatttaa
     2641 aaaaaaatag ttctcaaaaa ttgcagtttc tattttctca cgtttggtta tattcatgta
     2701 gcacataaat gcctagacta gttgtttact aactgcaatt ggtaaaacac agaccagcag
     2761 caaagtaaac aatgattgct tccacttcct taaggaattt gcgggcaacc atgtttaaat
     2821 tgcctaagat ggtaggatat ctaagcaact aaaataattg agttttgtac cactattttc
     2881 agaagaaaaa cgatcattta attttccaag attccttgtg attcgggcta ttccctattg
     2941 tctgggacta tatgcgctgt cagtcaacat ggcagaacag cttctagcag tcgagtaaca
     3001 tgttggacgg tgcactagga atataattca cctttgcctt tcttacagtt attactgatt
     3061 tcaccgttac ttagttcctc tagaactgtt tttccaggct tatttttgaa tctctagggg
     3121 cagagtgcat tctgttaggg ttgtatcatg tccttagaat gaggtttccg tccccttgag
     3181 ggaaagttag tagtaatgtt tcttcaccga ttatgaacat ttgtttcttg gaactggtta
     3241 aatttgtctc gtaaataata acagtggtta tagtagcctg tgcaaactgg taaagatttg
     3301 caaaactatg attggcatgt tagataacaa atgagaagtg tctaaggcgc gtgctatgtg
     3361 agagaggcaa agtgaactta tgtacagaag ctttcaatcc tccttatata gtggtagttg
     3421 atgctttact attggaccaa tagcagctcc tgttaattag ttggatgcat tatcacaagc
     3481 tttgtaatgt ttcatttata aactgccttc agcacatgcg tacctgttaa tgttttctca
     3541 gtgtcgtagg atgtcttcca gactctcact gtatcctgcc agtaaatagt tctagcttgt
     3601 tgaatttcct gcttattttt cattatctgt ggcatatagc aagcctaaaa gataattgta
     3661 atcatttttt tttcttttac agagtgagaa gttagattgt gtatgaaagc ctatagttat
     3721 tttatccatt atctttgatt aaggctttct aatattattt agtaagtgtt ccttccagtt
     3781 aatgcctgtg gccctactga attttaaggg aacagacaac ttttaagaaa taaaccttac
     3841 tgttttatac agtaagtttg tctgattggg aatgttctga agttggacat acaattggcc
     3901 agattcccaa gctaaaacct tggcctgaaa ggctgtgtac atgaatgtta acaagtacag
     3961 gaaagcaaat taaacttaag gtgacctaaa acaaaggcta gaaacaagtt ttcattggat
     4021 tcttagtctt tgtaagggct ttctgtttga cttacctcaa ctgccattga gtgagggtaa
     4081 atcaccttaa aatgactgat ttacctggaa gggtagttgt agtttccatc cttagcttgc
     4141 ttttgctttg gtcggcactg atgaaatgtg aagtggctat tctagacctt ggttgatctc
     4201 agcccctact cccagactgc tgaggtaact acagtccgtt acctagtgct attctccttg
     4261 tatccagaac actattaaaa ttttattatg ttaattttcg tactcctgtg cttctttttt
     4321 acttttgctc atgcacgtat tttagtatga atgtgttgct tttttaaaag tttgtgatat
     4381 ttagaaataa atttcaaaaa agtt
//
