LOCUS       NM_001374101            1751 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus complement factor H-related 3 (Cfhr3), transcript
            variant 1, mRNA.
ACCESSION   NM_001374101 XM_006530025
VERSION     NM_001374101.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   3  (bases 1 to 1751)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   4  (bases 1 to 1751)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   5  (bases 1 to 1751)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   6  (bases 1 to 1751)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   7  (bases 1 to 1751)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   8  (bases 1 to 1751)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL837518.17.
            
            On Sep 11, 2019 this sequence version replaced XM_006530025.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849386
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            inferred exon combination        :: based on alignments, homology
            RefSeq Select criteria           :: based on conservation,
                                                expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-165               AL837518.17        19896-20060
            166-339             AL837518.17        52593-52766
            340-534             AL837518.17        58104-58298
            535-711             AL837518.17        58671-58847
            712-888             AL837518.17        83170-83346
            889-1071            AL837518.17        86966-87148
            1072-1751           AL837518.17        95929-96608
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 61.62 cM"
     gene            1..1751
                     /gene="Cfhr3"
                     /gene_synonym="EG624286"
                     /note="complement factor H-related 3"
                     /db_xref="GeneID:624286"
                     /db_xref="MGI:MGI:3647418"
     exon            1..165
                     /gene="Cfhr3"
                     /gene_synonym="EG624286"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..1268
                     /gene="Cfhr3"
                     /gene_synonym="EG624286"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1"
                     /codon_start=1
                     /product="complement factor H-related 3 isoform 1
                     precursor"
                     /protein_id="NP_001361030.1"
                     /db_xref="GeneID:624286"
                     /db_xref="MGI:MGI:3647418"
                     /translation="MLLLSIIFLTAWLSTAKGEEKTCSLPYIPNGIYTPHRIIHRTDD
                     EIRYECKDGFYPATRSTVSKCTLTGWIPAPRCTLKPCDFPQLKYGHLYYEERVRPYFP
                     VSIGKEYSYYCDDGFSTPSGSYWDYLRCTAQGWEPKVPCLRKCVFHYVENGESSHWEN
                     NYVQGQSVKVQCYNGYSLQNDQDIMTCTENGWSPPPKCIRITDYCVNPPHVPNATIVT
                     MPMAKYPSGEKIHYECHKPFELFGKVEVMCQNGMWTEPPRCKDPTGKCGPPPPIDNGD
                     ITSLSLPVYASLSSVEYQCQKYYLLKGSKTITCRNGTWSEPPTCLSACIISEDILERH
                     NILLKWKQSQKVYSQSGDVIEFVCKPGYRQARKSPSFRAKCMNGDINYPTCV"
     exon            166..339
                     /gene="Cfhr3"
                     /gene_synonym="EG624286"
                     /inference="alignment:Splign:2.1.0"
     exon            340..534
                     /gene="Cfhr3"
                     /gene_synonym="EG624286"
                     /inference="alignment:Splign:2.1.0"
     exon            535..711
                     /gene="Cfhr3"
                     /gene_synonym="EG624286"
                     /inference="alignment:Splign:2.1.0"
     exon            712..888
                     /gene="Cfhr3"
                     /gene_synonym="EG624286"
                     /inference="alignment:Splign:2.1.0"
     exon            889..1071
                     /gene="Cfhr3"
                     /gene_synonym="EG624286"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..1751
                     /gene="Cfhr3"
                     /gene_synonym="EG624286"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtaatacac tgaagttcaa tgtcatacac agcattttta atgacggggt tcccagaagg
       61 accaccacat ctggagcttt aagctttaga acatggggtt ctgcagcatg ttgctcttat
      121 ccattatctt tctaactgca tggctttcta ctgctaaagg ggaagaaaag acatgctcgc
      181 ttccttatat tccaaatggt atctacacac ctcacaggat tatacacaga actgatgatg
      241 aaatcagata tgaatgtaaa gatggcttct atcctgcaac cagatcaaca gtttcaaagt
      301 gtacactcac tggctggatc cctgctccaa gatgtacctt gaaaccttgt gattttccac
      361 aactcaaata tggacatctg tattacgaag agagagtaag accctacttc ccagtgtcta
      421 taggaaagga atacagctat tactgtgacg acgggttttc aacaccttct gggtcatact
      481 gggactacct tcgttgcaca gcacaagggt gggagcctaa agtcccatgc ctcagaaaat
      541 gtgttttcca ttatgtggag aatggagaat cttcacactg ggaaaacaac tacgtgcagg
      601 gtcagtctgt aaaagtccag tgttacaatg gctatagtct tcaaaatgat caagatataa
      661 tgacatgtac agagaatggc tggtcccctc ctcccaaatg catccgtatc actgattact
      721 gtgtgaatcc acctcatgtg ccaaatgcta ctatagtaac aatgcccatg gccaaatatc
      781 cctctggtga gaaaatacat tatgaatgtc ataaaccttt tgaactattt gggaaagtgg
      841 aagtgatgtg tcaaaatggg atgtggactg aaccaccaag atgcaaagat ccaacaggga
      901 aatgtgggcc tcctccacct attgacaatg gagacatcac ctccttgtca ttaccagtat
      961 atgcatcatt atcatcagtt gaatatcagt gtcagaagta ttatctcctt aaaggaagta
     1021 agacaataac atgtagaaat ggaacgtggt ctgagccacc aacctgttta tctgcatgta
     1081 taatatcaga agacattctg gaaagacata acatacttct caaatggaaa caaagccaaa
     1141 aggtttattc tcaatcaggg gatgttattg aatttgtgtg taaacctgga tatagacaag
     1201 caagaaaatc accatcattt cgtgcgaaat gtatgaatgg tgacatcaat tatcccactt
     1261 gtgtataaaa tcacaataca tttatccatt gattttatta tttagaaata cacatgcata
     1321 ttactagtac attttcaatt tagatttgaa atgttaattc atttcttctc ataaatataa
     1381 acttttttgt tatatggtga ttaatttgta actttaaaga caattgccaa aatgcaaaag
     1441 cagtaattca aaactcctaa tctaaaccat tgtatgtcca agggcaaact atgtcaaaaa
     1501 agaaaataga tgtaagttct tcaacatctg tttctattca gaactttctc agattttcct
     1561 ggataccttt tgatgtaaca ttttgattta taatgaatga aagatatatt gactcatttt
     1621 tcaaattagt attatttctg aatcatgtac caacaaaact atcatatatt aatattatat
     1681 tactaatgca tataattaaa tactatgtaa tactttaata ttaataaaaa tctaaggaaa
     1741 ttcttgcata a
//
