LOCUS       NM_001370805            3162 bp    mRNA    linear   ROD 08-OCT-2020
DEFINITION  Mus musculus cilia and flagella associated protein 99 (Cfap99),
            mRNA.
ACCESSION   NM_001370805 XM_006504217
VERSION     NM_001370805.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3162)
  AUTHORS   Hansen GM, Markesich DC, Burnett MB, Zhu Q, Dionne KM, Richter LJ,
            Finnell RH, Sands AT, Zambrowicz BP and Abuin A.
  TITLE     Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
  JOURNAL   Genome Res 18 (10), 1670-1679 (2008)
   PUBMED   18799693
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from AC104889.10.
            
            On Jun 3, 2019 this sequence version replaced XM_006504217.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384,
                              SAMN00849387 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-96                AC104889.10        65008-65103         c
            97-225              AC104889.10        56146-56274         c
            226-370             AC104889.10        52247-52391         c
            371-465             AC104889.10        51120-51214         c
            466-578             AC104889.10        48312-48424         c
            579-756             AC104889.10        45705-45882         c
            757-837             AC104889.10        43680-43760         c
            838-912             AC104889.10        43424-43498         c
            913-984             AC104889.10        42346-42417         c
            985-1073            AC104889.10        42023-42111         c
            1074-1278           AC104889.10        39380-39584         c
            1279-1420           AC104889.10        30674-30815         c
            1421-1572           AC104889.10        30300-30451         c
            1573-1778           AC104889.10        28555-28760         c
            1779-1941           AC104889.10        26713-26875         c
            1942-3162           AC104889.10        25337-26557         c
FEATURES             Location/Qualifiers
     source          1..3162
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5"
     gene            1..3162
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /note="cilia and flagella associated protein 99"
                     /db_xref="GeneID:100862066"
                     /db_xref="MGI:MGI:5434801"
     exon            1..96
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            97..225
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     CDS             112..2058
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 99"
                     /protein_id="NP_001357734.1"
                     /db_xref="CCDS:CCDS89906.1"
                     /db_xref="GeneID:100862066"
                     /db_xref="MGI:MGI:5434801"
                     /translation="MTYYEKCIEIVIKQLDKFKPGKDNPEQFVETVFTSLQQTLSPQK
                     FGFVLEVLSGCLEYHKLLTIVVDAFYARDGHTCLWSDYSLFEVICYLAIFQLEELGFQ
                     LFCSIIKSQPVRKMCKFLRFFFNPLNLSSWIKDEWSLIYETAHVMENWIDPLLRWQPE
                     VQKLIKQLEGVPTDQIPVLKTKAKVTVPKEFNLTVPRPRAITMPEPVPTMDKPRPVPQ
                     STYKEPKEQKLLQIIKTCNRRTAEELLLKANMEELQCAMPRVQREPQEQDVEKQLWHQ
                     SVPHIRRTPNLTFYKPNNLPVKLNTATILREGALYQRQVEKELQRVDKLVDGAGDFSE
                     FLKWQKKMQAQDLEEQLAAGECRRLQGKLSHEEAILARQNLMQENKQKADRQKEETAE
                     LMLQCAERRLQEEKAMKELVEQVTEAQKNVKIVQTKLVKGRQQIVQEVIEESRELLQR
                     SAKEAKEEQKRRCELIAHLRAMETQPTRKGKLVDLTQIPGYGLEGEMSVVELRERLAM
                     LKETQKREQEEKRDQIIQDKRAKSQMIQNTVEQISLCRAAMGRTAALRWEEKKAQATS
                     PGTPSQDERVLELKRKMEERAAERRRQTAPQLTSPPRALRPNQRAQEEMQHWLELDQS
                     RERRLRARQEANRTCHATHHLEAS"
     exon            226..370
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            371..465
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            466..578
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            579..756
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            757..837
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            838..912
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            913..984
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            985..1073
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1278
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            1279..1420
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            1421..1572
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            1573..1778
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            1779..1941
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
     exon            1942..3162
                     /gene="Cfap99"
                     /gene_synonym="Gm21446"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatctgcggg taccggagct ggccagtgaa cgctcccgcc cgcggcgcct ggacagacta
       61 cgaggttaaa gccaaggaag gccaagaggc ccgcaggacc ctgctccaaa gatgacctac
      121 tatgaaaaat gcattgagat tgtgataaag cagcttgaca aatttaagcc tggaaaggac
      181 aatcctgagc aattcgtgga gacagtattc acctccttac agcagactct gagcccacag
      241 aagtttgggt ttgttttgga ggttctgtct ggctgccttg aataccacaa gttactgacc
      301 atcgtggtgg atgccttcta tgcacgggat ggccatacct gcctgtggtc cgactacagc
      361 ctctttgagg tgatctgcta cctggccatc ttccagctgg aggagcttgg cttccagctt
      421 ttctgcagca tcatcaagtc tcagcctgtt cgtaagatgt gcaagttcct cagattcttc
      481 tttaacccct tgaacctgag ctcatggatc aaagacgagt ggagcctcat ctacgaaaca
      541 gcccatgtga tggagaactg gattgaccct ctgttgagat ggcagccaga ggtccagaag
      601 ctgatcaaac aactggaggg agtaccaacc gatcaaattc ctgtcttgaa gaccaaggcc
      661 aaagtcacag tgcccaagga attcaacctg actgtcccaa ggccccgcgc cattacaatg
      721 cctgagcctg tccccactat ggacaagccg agacctgtcc ctcagagcac ctataaggag
      781 cccaaggagc agaagcttct gcagatcatc aagacatgca accgccggac agctgaggag
      841 ctgctgctga aagccaacat ggaagagcta cagtgtgcca tgccccgggt gcagagggag
      901 ccacaagaac aggacgtgga gaagcagctg tggcatcagt cagtacccca catccgtagg
      961 actccaaatc tgaccttcta taagcctaac aacctcccgg tcaagctgaa cacagccacc
     1021 atccttcgag aaggggcctt ataccagcgg caggtggaga aggagctgca gagagttgat
     1081 aaacttgtgg atggggctgg ggacttctct gaattcctta agtggcagaa gaagatgcag
     1141 gcacaggacc tagaggagca gctggctgca ggcgagtgcc ggcggcttca gggaaagctg
     1201 agccacgagg aggccatctt ggcccggcag aacctcatgc aggaaaacaa gcagaaggcc
     1261 gaccggcaga aggaggagac agctgagcta atgctgcagt gtgctgagag gcgcttgcaa
     1321 gaggagaagg ccatgaaaga gctggtggag caggtcacag aggcacagaa gaatgtcaag
     1381 atagtccaaa cgaagctcgt gaagggccgg cagcagatag ttcaggaggt gatagaggag
     1441 agccgggagt tgctacagcg tagtgcaaag gaagccaaag aggaacagaa gcgtcgctgt
     1501 gagctcattg ctcaccttcg tgccatggag acacagccca cacgcaaggg gaagctggtg
     1561 gaccttaccc agatcccagg ctatggtctg gaaggtgaga tgtctgttgt ggaacttcga
     1621 gaacggctgg ccatgctcaa agagacccag aaacgagagc aagaggagaa gcgggatcaa
     1681 atcatccagg acaaacgagc caagagccaa atgatacaga acacagtgga acagatctca
     1741 ctgtgccgcg cagccatggg caggaccgca gccttgaggt gggaggaaaa gaaggcccag
     1801 gctacaagcc ctgggacacc ctcccaggat gagcgcgtgc tggagctgaa gcgcaaaatg
     1861 gaggagaggg cagctgaacg ccgcaggcag acagcaccgc agctcacgtc accgccccgg
     1921 gccctacgtc caaatcagcg ggcgcaggag gagatgcagc actggctgga gctggaccag
     1981 agtcgagagc gcaggctgcg ggcaaggcaa gaggcaaatc gcacctgcca cgctacccat
     2041 cacctagagg cttcctgagt cacctggcag ccccacgcca acactgcatg cagctgccga
     2101 cgtgagcccc cctgccccta cccctatgac agtggctctc ttcctccacc cctgccacaa
     2161 agcttaccct ctccccagct ccagcctgct cctgtatggt tgctccagaa aaaaaagtgt
     2221 ggtagtgttt agaaatgctg aacaaaaaag tactcttcct ctggactgca actggctacc
     2281 acgtttttat atgccaaacc tggctcttcc ctatgtccaa caagtctttt cataggactg
     2341 gaagcaccaa tctcctccca gaaccagttg atgtgcctgg gaccccgcat ataagtgtga
     2401 gattgcaaat gcggtcaaat tcttaagcat atgctcagga caggcctttc tcatgtctct
     2461 cgtggatcat cacagcaatc acatcaccca gcaactatag cccactcatc tcctgttctg
     2521 ctaatgaggc cacctgtcct caaagaggcg actctggctt aagctaactg gaggtacctt
     2581 tcagggtcct ctctccatta tcatcaagag cccaaatcca acaaaattgg atttgtggac
     2641 agtggctcaa cagggcagat cagataaatt ctaagtttct cgccttactg ctgctctgtg
     2701 ctggggaaag ctggacttta ataataggtg tgtgcctgcc agtgaaactt agcctagaga
     2761 ataaagctgc attgtgacgt ttggttctta ggaaaaagat ggtgggcaag tactggggag
     2821 ggaataaggc aaggagaaac tactagatgg gtagatgttc aggagagaga agacatcacc
     2881 acaccttgac catcctcaga tctacagagg tccctcgggt ggtaaggcag tcttacccca
     2941 gggtacttca gaccaagaaa gactcttagc attgacggga acaaatttgt ctcagagttc
     3001 tatcccagta ttgtagaact aacagaattc caaggctctt gtacaactct ggcaggggag
     3061 tgggaggtgt ttagaggttg ctagggacaa aggaatcctt gtctccctgt tgaattagaa
     3121 ttgggggcag attcagtttt acttaaataa gaatcacatt tc
//
