LOCUS       NM_001101519             781 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus CFAP97 domain containing 2 (Cfap97d2), mRNA.
ACCESSION   NM_001101519 XM_620624 XM_920925
VERSION     NM_001101519.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK038767.1.
            
            On or before Nov 16, 2007 this sequence version replaced
            XM_920925.2, XM_620624.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BB176275.2, AK038767.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-781               AK038767.1         3-783
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 6.38 cM"
     gene            1..781
                     /gene="Cfap97d2"
                     /gene_synonym="4932443I19Rik; A230061C02Rik; Gm1106"
                     /note="CFAP97 domain containing 2"
                     /db_xref="GeneID:403185"
                     /db_xref="MGI:MGI:2685952"
     exon            1..168
                     /gene="Cfap97d2"
                     /gene_synonym="4932443I19Rik; A230061C02Rik; Gm1106"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..375
                     /gene="Cfap97d2"
                     /gene_synonym="4932443I19Rik; A230061C02Rik; Gm1106"
                     /note="CFAP97 domain-containing protein 2"
                     /codon_start=1
                     /product="uncharacterized protein CFAP97D2"
                     /protein_id="NP_001094989.1"
                     /db_xref="CCDS:CCDS52489.1"
                     /db_xref="GeneID:403185"
                     /db_xref="MGI:MGI:2685952"
                     /translation="MHRVPRLTTPWANRDLQRAWEKTYQDHRKKVQNAQPLVDTHPPQ
                     IYSHLCLKFKKLKMEEERLSIIDRNNYLLLQRVASAMKTRGQTDGRNNFTQRRS"
     exon            169..249
                     /gene="Cfap97d2"
                     /gene_synonym="4932443I19Rik; A230061C02Rik; Gm1106"
                     /inference="alignment:Splign:2.1.0"
     exon            250..368
                     /gene="Cfap97d2"
                     /gene_synonym="4932443I19Rik; A230061C02Rik; Gm1106"
                     /inference="alignment:Splign:2.1.0"
     exon            369..781
                     /gene="Cfap97d2"
                     /gene_synonym="4932443I19Rik; A230061C02Rik; Gm1106"
                     /inference="alignment:Splign:2.1.0"
     regulatory      688..693
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cfap97d2"
                     /gene_synonym="4932443I19Rik; A230061C02Rik; Gm1106"
                     /note="hexamer: AACAAA"
     polyA_site      706
                     /gene="Cfap97d2"
                     /gene_synonym="4932443I19Rik; A230061C02Rik; Gm1106"
                     /note="major polyA site"
ORIGIN      
        1 cacaaacagc tctgctgctg gggctgtact gctgctgcct gctcctctct gaagggacgc
       61 tggagtttgt gatctgagat gcatagagtc ccccggctga ccaccccgtg ggctaatagg
      121 gacctgcaga gagcctggga gaaaacctac caggaccaca ggaaaaaggt ccagaatgcc
      181 caaccactag tggacaccca cccaccacag atttacagtc atctctgcct aaagttcaag
      241 aagttgaaga tggaggaaga gagactctcc atcattgaca ggaacaacta cctgcttctg
      301 cagagggtgg cctccgccat gaaaaccagg ggacagactg atggccgaaa taactttaca
      361 cagagaagga gctgagaggg acggccacag cctcatctgg acgcgcagcc tgaagccaaa
      421 ggggtgaggg tcagaaccca tccactgaaa ggagaccagg gcccagatgc tccgatgagg
      481 ccttcctgtg tctccttggg gtggggtggg gatgggggtg ggggtgtgca ggtcttgggg
      541 ctggtggcct cgcatctgag gctggcttca tggcctccag ggaccgtcat gggcactgtg
      601 atgcagcact ccggagctgc tcggtcacaa tcttcaccag atgacatagc acagctattt
      661 attgtgtttc ttggactgat aaccaaaaac aaaatatgca gagtaacact ggactttctt
      721 ttctagctgt taatactttt ctgagttacc atgagtttgg gtgattgtat gtaattctct
      781 t
//
